Transformer-Based Multi-Scale Fusion for Robust Predicting Microsatellite Instability from Pathological Images

Authors: Hu, Taiyuan, Luan, Haijing, Yan, Rui, Hu, Jifang, Yang, Kaixing, Han, Xinyin, Liu, Weier, He, Jiayin, Duan, Xiaohong, Li, Ruilin, Zhang, Fa, Niu, Beifang

Source: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :2046-2053 Dec, 2024

Relation: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

RabbitQCPlus: More Efficient Quality Control for Sequencing Data

Authors: Yan, Lifeng, Yin, Zekun, Zhang, Hao, Zhao, Zhan, Wang, Mingkai, Muller, Andre, Kobus, Robin, Wei, Yanjie, Niu, Beifang, Schmidt, Bertil, Liu, Weiguo

Source: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :619-626 Dec, 2022

Relation: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Review of deep learning-based pathological image classification: From task-specific models to foundation models

Authors: Luan, Haijing ^{a, b}, Yang, Kaixing ^{b, c}, Hu, Taiyuan ^{a, b}, Hu, Jifang ^{a, b}, Liu, Siyao ^d, Li, Ruilin ^a, He, Jiayin ^a, Yan, Rui ^{e, f}, Guo, Xiaobing ^g, Qian, Niansong ^h, Niu, Beifang ^{a, b, ⁎}

Source: In Future Generation Computer Systems March 2025 164

Change-Encryption: Encryption Using Spatiotemporal Information as a Function Model

Authors: Dai, Chuangchuang, Luan, Haijing, Yu, Qingbing, He, Xiaoyu, Wang, Yunhao, Shuai, Bincheng, Guo, Xiaobing, Lu, Zhonghua, Niu, Beifang

Source: 2020 7th IEEE International Conference on Cyber Security and Cloud Computing (CSCloud)/2020 6th IEEE International Conference on Edge Computing and Scalable Cloud (EdgeCom) Cyber Security and Cloud Computing (CSCloud)/2020 6th IEEE International Conference on Edge Computing and Scalable Cloud (EdgeCom), 2020 7th IEEE International Conference on. :281-287 Aug, 2020

Relation: 2020 7th IEEE International Conference on Cyber Security and Cloud Computing (CSCloud)/2020 6th IEEE International Conference on Edge Computing and Scalable Cloud (EdgeCom)

DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences

Authors: Yin, Zekun, Xu, Xiaoming, Fan, Kaichao, Li, Ruilin, Li, Weizhong, Liu, Weiguo, Niu, Beifang

Source: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2019 IEEE International Conference on. :2272-2279 Nov, 2019

Relation: 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Distributed Parameter Optimization Scheduling Strategy and System Design Based on Mesos

Authors: Li, Shuo, Lu, Zhonghua, Sun, Yongze, Deng, Sungen, Niu, Beifang

Source: 2019 IEEE 5th Intl Conference on Big Data Security on Cloud (BigDataSecurity), IEEE Intl Conference on High Performance and Smart Computing, (HPSC) and IEEE Intl Conference on Intelligent Data and Security (IDS) Big Data Security on Cloud (BigDataSecurity), IEEE Intl Conference on High Performance and Smart Computing, (HPSC) and IEEE Intl Conference on Intelligent Data and Security (IDS), 2019 IEEE 5th Intl Conference on. :218-224 May, 2019

Relation: 2019 IEEE 5th Intl Conference on Big Data Security on Cloud (BigDataSecurity), IEEE Intl Conference on High Performance and Smart Computing, (HPSC) and IEEE Intl Conference on Intelligent Data and Security (IDS)

Peridynamic modeling for multiscale heat transport of phonon Boltzmann transport equation

Authors: Liu, Weier, Feng, Yangde, Li, Ruilin, Bai, Chenhan, Niu, Beifang

Source: In Computer Physics Communications June 2024 299

A comprehensive performance evaluation, comparison, and integration of computational methods for detecting and estimating cross-contamination of human samples in cancer next-generation sequencing analysis

Authors: Chen, Huijuan ^{a, b, c, 1}, Wang, Bing ^{a, 1}, Cai, Lili ^{a, 1}, Yang, Xiaotian ^a, Hu, Yali ^a, Zhang, Yiran ^a, Leng, Xue ^a, Liu, Wen ^a, Fan, Dongjie ^{d, ⁎}, Niu, Beifang ^{a, b, e, ⁎}, Zhou, Qiming ^{a, e, ⁎}

Source: In Journal of Biomedical Informatics April 2024 152

Unveiling the metal mutation nexus: Exploring the genomic impacts of heavy metal exposure in lung adenocarcinoma and colorectal cancer

Authors: Liu, Mengyuan, Hong, Yuting, Duan, Xiaohong, Zhou, Qiming, Chen, Jing, Liu, Siyao, Su, Junyan, Han, Li, Zhang, Jiali, Niu, Beifang

Source: In Journal of Hazardous Materials 5 January 2024 461

RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data

Authors: Yan, Lifeng, Yin, Zekun, Zhang, Hao, Zhao, Zhan, Wang, Mingkai, Müller, André, Kallenborn, Felix, Wichmann, Alexander, Wei, Yanjie, Niu, Beifang, Schmidt, Bertil, Liu, Weiguo

Source: Methods. 216:39-50

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193637439.0x000001&indx=1&recIds=ETOCvdc_100193637439.0x000001

Long-term response to sintilimab, bevacizumab and chemotherapy in heavily pretreated microsatellite stable colon cancer

Authors: Cui, Zhi, Wang, Qi, Deng, Muhong, Meng, Erhong, Liu, Sheng, Niu, Beifang, Han, Quanli

Source: Immunotherapy. 15(3):127-133

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191699578.0x000001&indx=1&recIds=ETOCvdc_100191699578.0x000001

Long-term response to camrelizumab in a pretreated metastatic mixed testicular germ-cell tumor patient with co-mutations in DNA damage-repair genes

Authors: Zhang, Hui, Jiang, Da, Meng, Erhong, Zhao, Meng, Niu, Beifang

Source: Immunotherapy. 15(1):17-25

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191690765.0x000001&indx=1&recIds=ETOCvdc_100191690765.0x000001

Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204

Authors: Shi, Xiaoli, Cui, Fa, Han, Xinyin, He, Yilin, Zhao, Long, Zhang, Na, Zhang, Hao, Zhu, Haidong, Liu, Zhexin, Ma, Bin, Zheng, Shusong, Zhang, Wei, Liu, Jiajia, Fan, Xiaoli, Si, Yaoqi, Tian, Shuiquan, Niu, Jianqing, Wu, Huilan, Liu, Xuemei, Chen, Zhuo, Meng, Deyuan, Wang, Xiaoyan, Song, Liqiang, Sun, Lijing, Han, Jie, Zhao, Hui, Ji, Jun, Wang, Zhiguo, He, Xiaoyu, Li, Ruilin, Chi, Xuebin, Liang, Chengzhi, Niu, Beifang, Xiao, Jun, Li, Junming, Ling, Hong-Qing

Source: In Molecular Plant 5 September 2022 15(9):1440-1456

Dramatic response to local radiotherapy in a refractory metastatic mediastinal yolk sac tumor patient harboring a germline BRCA2 frameshift mutation: a case report

Authors: Cheng, Xi, Yu, Haiming, Li, Jinying, Han, Xiaona, Meng, Erhong, Zhou, Houqing, Wang, Dongliang, Niu, Beifang, Zhang, Xiaotao

Source: Cancer biology & therapy. 23(1):393-400

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167402850.0x000001&indx=1&recIds=ETOCvdc_100167402850.0x000001

Digital Currency Investment Strategy Framework Based on Ranking
Algorithms and architectures for parallel processing (International conference)

Authors: Dai, Chuangchuang, Yang, Xueying, Qiu, Meikang, Guo, Xiaobing, Lu, Zhonghua, Niu, Beifang

Source: Lecture notes in computer science. 12454:654-662

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606364993&indx=1&recIds=ETOCCN606364993

Gclust: A Parallel Clustering Tool for Microbial Genomic Data

Authors: Li, Ruilin, He, Xiaoyu, Dai, Chuangchuang, Zhu, Haidong, Lang, Xianyu, Chen, Wei, Li, Xiaodong, Zhao, Dan, Zhang, Yu, Han, Xinyin, Niu, Tie, Zhao, Yi, Cao, Rongqiang, He, Rong, Lu, Zhonghua, Chi, Xuebin, Li, Weizhong, Niu, Beifang

Source: In Genomics, Proteomics & Bioinformatics October 2019 17(5):496-502

How Big Data and High-performance Computing Drive Brain Science

Authors: Chen, Shanyu, He, Zhipeng, Han, Xinyin, He, Xiaoyu, Li, Ruilin, Zhu, Haidong, Zhao, Dan, Dai, Chuangchuang, Zhang, Yu, Lu, Zhonghua, Chi, Xuebin, Niu, Beifang

Source: In Genomics, Proteomics & Bioinformatics August 2019 17(4):381-392

Deep Parallel Optimizations on an LASG/IAP Climate System Ocean Model and Its Large-Scale Parallelization.

Authors: Hao, Huiqun^1,2, Jiang, Jinrong¹, jjr@sccas.cn, Wang, Tianyi³, Liu, Hailong^2,4, Lin, Pengfei^2,4, Zhang, Ziyang⁵, Niu, Beifang¹, jjr@sccas.cn

Source: Applied Sciences (2076-3417); Feb2023, Vol. 13 Issue 4, p2690, 19p

OncoPubMiner: a platform for mining oncology publications

Authors: Xu, Quan, Liu, Yueyue, Hu, Jifang, Duan, Xiaohong, Song, Niuben, Zhou, Jiale, Zhai, Jincheng, Su, Junyan, Liu, Siyao, Chen, Fan, Zheng, Wei, Guo, Zhongjia, Li, Hexiang, Zhou, Qiming, Niu, Beifang

Source: Briefings in bioinformatics. 23(5)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164432621.0x000001&indx=1&recIds=ETOCvdc_100164432621.0x000001

Pan-cancer analysis of somatic mutations across 21 neuroendocrine tumor types

Authors: Cao, Yanan, Zhou, Weiwei, Li, Lin, Wang, Jiaqian, Gao, Zhibo, Jiang, Yiran, Jiang, Xiuli, Shan, Aijing, Bailey, Matthew, Huang, Kuan-lin, Sun, Sam, McLellan, Michael, Niu, Beifang, Wang, Weiqing, Ding, Li, Ning, Guang

Source: Cell research. 28(5):601-604

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125943481.0x000001&indx=1&recIds=ETOCvdc_100125943481.0x000001