Metabolomic profiling and prognostication in COVID-19 acute respiratory distress syndrome

Authors: David Furfaro, Xiaoyu Che, Wenhao Gou, Matthew J. Cummings, Nischay Mishra, Daniel Brodie, Thomas Briese, Oliver Fiehn, W. Ian Lipkin, Max R. O'Donnell

Source: Journal of Intensive Medicine, Vol 5, Iss 1, Pp 108-110 (2025)

Subject Terms: Medical emergencies. Critical care. Intensive care. First aid, RC86-88.9

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667100X2400046X; https://doaj.org/toc/2667-100X

Access URL: https://doaj.org/article/41cb54a50e2b416b88173605fb7c4947

A potential role for SARS-CoV-2 small viral RNAs in targeting host microRNAs and modulating gene expression

Authors: Zachary T. Neeb, Alexander J. Ritter, Lokendra V. Chauhan, Sol Katzman, W. Ian Lipkin, Nischay Mishra, Jeremy R. Sanford

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-12 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/1aa8ebdde9954154b6680082a925edf9

SARS-CoV-2 Sequence Analysis during COVID-19 Case Surge, Liberia, 2021

Authors: Bode Shobayo, Mitali Mishra, Stephen Sameroff, Alexandra Petrosov, James Ng, Alper Gokden, Jane MaCauley, Komal Jain, Courtney Renken, James Tanu Duworko, Moses Badio, Wilhemina Jallah, Lisa Hensley, Thomas Briese, W. Ian Lipkin, Nischay Mishra

Source: Emerging Infectious Diseases, Vol 27, Iss 12, Pp 3185-3188 (2021)

Subject Terms: COVID-19, respiratory infections, severe acute respiratory syndrome coronavirus 2, SARS-CoV-2, SARS, coronavirus disease, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/27/12/21-1818_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/83097afa6ad64368b92993b9c37f0f16

Development of a capture sequencing assay for enhanced detection and genotyping of tick-borne pathogens

Authors: Komal Jain, Teresa Tagliafierro, Adriana Marques, Santiago Sanchez-Vicente, Alper Gokden, Brian Fallon, Nischay Mishra, Thomas Briese, Vishal Kapoor, Stephen Sameroff, Cheng Guo, Luis A. Marcos, Linden Hu, W. Ian Lipkin, Rafal Tokarz

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/dbd846340ea64ae88cdea56825636c91

Immunoreactive peptide maps of SARS-CoV-2

Authors: Nischay Mishra, Xi Huang, Shreyas Joshi, Cheng Guo, James Ng, Riddhi Thakkar, Yongjian Wu, Xin Dong, Qianlin Li, Richard S. Pinapati, Eric Sullivan, Adrian Caciula, Rafal Tokarz, Thomas Briese, Jiahai Lu, W. Ian Lipkin

Source: Communications Biology, Vol 4, Iss 1, Pp 1-7 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/d6d4997c661440319c0d9efbc22cb7b2

Spillover of ebolaviruses into people in eastern Democratic Republic of Congo prior to the 2018 Ebola virus disease outbreak

Authors: Tracey Goldstein, Manjunatha N. Belaganahalli, Eddy K. Syaluha, Jean-Paul K. Lukusa, Denise J. Greig, Simon J. Anthony, Alexandre Tremeau-Bravard, Riddhi Thakkar, Adrian Caciula, Nischay Mishra, W. Ian Lipkin, Jasjeet K. Dhanota, Brett R. Smith, Victoria M. Ontiveros, Nistara Randhawa, Michael Cranfield, Christine K. Johnson, Kirsten V. Gilardi, Jonna A. K. Mazet

Source: One Health Outlook, Vol 2, Iss 1, Pp 1-10 (2020)

Subject Terms: Ebola virus, Bombali virus, Ebola virus disease, Ebolavirus serology, Eastern DRC, Zoonosis, Environmental sciences, GE1-350, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s42522-020-00028-1; https://doaj.org/toc/2524-4655

Access URL: https://doaj.org/article/0520cfa1974047d3a801d82cb3f069a0

Cross-Reactive Antibody Responses against Nonpoliovirus Enteroviruses

Authors: Amy B. Rosenfeld, Edmund Qian Long Shen, Michaela Melendez, Nischay Mishra, W. Ian Lipkin, Vincent R. Racaniello

Source: mBio, Vol 13, Iss 1 (2022)

Subject Terms: antibody, antigenic variation, enterovirus, poliovirus, serotype, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/5dc46e0b32f245a98d0c8295389db4dd

Evaluating the efficacy and safety of human anti-SARS-CoV-2 convalescent plasma in severely ill adults with COVID-19: A structured summary of a study protocol for a randomized controlled trial

Authors: Christina M. Eckhardt, Matthew J. Cummings, Kartik N. Rajagopalan, Sarah Borden, Zachary C. Bitan, Allison Wolf, Alex Kantor, Thomas Briese, Benjamin J. Meyer, Samuel D. Jacobson, Dawn Scotto, Nischay Mishra, Neena M. Philip, Brie A. Stotler, Joseph Schwartz, Beth Shaz, Steven L. Spitalnik, Andrew Eisenberg, Eldad A. Hod, Jessica Justman, Ken Cheung, W. Ian Lipkin, Max R. O’Donnell

Source: Trials, Vol 21, Iss 1, Pp 1-3 (2020)

Subject Terms: COVID-19, SARS-CoV-2, Respiratory Failure, Randomized controlled trial, Protocol, Convalescent Plasma, Medicine (General), R5-920

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13063-020-04422-y; https://doaj.org/toc/1745-6215

Access URL: https://doaj.org/article/b30a100901de47b98b139bece3b14ae0

Vesicular Stomatitis Virus Chimeras Expressing the Oropouche Virus Glycoproteins Elicit Protective Immune Responses in Mice

Authors: Sarah Hulsey Stubbs, Marjorie Cornejo Pontelli, Nischay Mishra, Changhong Zhou, Juliano de Paula Souza, Rosa Maria Mendes Viana, W. Ian Lipkin, David M. Knipe, Eurico Arruda, Sean P. J. Whelan

Source: mBio, Vol 12, Iss 4 (2021)

Subject Terms: Oropouche virus, arbovirus, bunyavirus, emerging infectious diseases, vaccines, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/769e93f927cb42e19a1bbf60c6eef537

Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family

Authors: Luisa J. Ströh, Nils H. Rustmeier, Bärbel S. Blaum, Josephine Botsch, Philip Rößler, Florian Wedekink, W. Ian Lipkin, Nischay Mishra, Thilo Stehle

Source: mBio, Vol 11, Iss 4 (2020)

Subject Terms: polyomavirus, evolution, glycan receptor, host-pathogen interactions, sialic acid, virus tropism, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/a097cda496f14793bdc47214e465c1f6

A Short Series of Case Reports of COVID-19 in Immunocompromised Patients

Authors: Mitali Mishra, Aleena Zahra, Lokendra V. Chauhan, Riddhi Thakkar, James Ng, Shreyas Joshi, Eric D. Spitzer, Luis A. Marcos, W. Ian Lipkin, Nischay Mishra

Source: Viruses, Vol 14, Iss 5, p 934 (2022)

Subject Terms: COVID-19, immunocompromised, SARS-CoV-2, infection, immune response, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/5/934; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/2a45632e455241398f8632661218cb55

Author Correction: Immunoreactive peptide maps of SARS-CoV-2 and other human coronaviruses

Authors: Nischay Mishra, Xi Huang, Shreyas Joshi, Cheng Guo, James Ng, Riddhi Thakkar, Yongjian Wu, Xin Dong, Qianlin Li, Richard S. Pinapati, Eric Sullivan, Adrian Caciula, Rafal Tokarz, Thomas Briese, Jiahai Lu, W. Ian Lipkin

Source: Communications Biology, Vol 4, Iss 1, Pp 1-2 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/ae1192fc30c843209a65f3818888f5d7

Correction to: Evaluating the efficacy and safety of human anti-SARS-CoV-2 convalescent plasma in severely ill adults with COVID-19: A structured summary of a study protocol for a randomized controlled trial

Authors: Christina M. Eckhardt, Matthew J. Cummings, Kartik N. Rajagopalan, Sarah Borden, Zachary C. Bitan, Allison Wolf, Alex Kantor, Thomas Briese, Benjamin J. Meyer, Samuel D. Jacobson, Dawn Scotto, Nischay Mishra, Neena M. Philip, Brie A. Stotler, Joseph Schwartz, Beth Shaz, Steven L. Spitalnik, Andrew Eisenberger, Eldad A. Hod Jessica Justman, Ken Cheung, W. Ian Lipkin, Max R. O’Donnell

Source: Trials, Vol 21, Iss 1, Pp 1-2 (2020)

Subject Terms: Medicine (General), R5-920

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13063-020-04877-z; https://doaj.org/toc/1745-6215

Access URL: https://doaj.org/article/f3696b4c6ecc440da6815dc4b3d60ec7

Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis

Authors: Nischay Mishra, Terry Fei Fan Ng, Rachel L. Marine, Komal Jain, James Ng, Riddhi Thakkar, Adrian Caciula, Adam Price, Joel A. Garcia, Jane C. Burns, Kiran T. Thakur, Kimbell L. Hetzler, Janell A. Routh, Jennifer L. Konopka-Anstadt, W. Allan Nix, Rafal Tokarz, Thomas Briese, M. Steven Oberste, W. Ian Lipkin

Source: mBio, Vol 10, Iss 4 (2019)

Subject Terms: VirCapSeq-VERT, acute flaccid myelitis, antibodies, enterovirus, enterovirus D-68, peptide array, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/aac3bce73c744aba9b817e8d6ed19651

Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome

Authors: Dorottya Nagy-Szakal, Brent L. Williams, Nischay Mishra, Xiaoyu Che, Bohyun Lee, Lucinda Bateman, Nancy G. Klimas, Anthony L. Komaroff, Susan Levine, Jose G. Montoya, Daniel L. Peterson, Devi Ramanan, Komal Jain, Meredith L. Eddy, Mady Hornig, W. Ian Lipkin

Source: Microbiome, Vol 5, Iss 1, Pp 1-17 (2017)

Subject Terms: Myalgic encephalomyelitis, Chronic fatigue syndrome, Microbiota-gut-brain axis, Metagenomic, Topological data analysis, Irritable bowel syndrome, Microbial ecology, QR100-130

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-017-0261-y; https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/b72ed2f2d5bb4e1bb92d077bf92ef9df

A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.

Authors: Nischay Mishra, Shamsudeen F Fagbo, Abdulaziz N Alagaili, Adam Nitido, Simon H Williams, James Ng, Bohyun Lee, Abdulkareem Durosinlorun, Joel A Garcia, Komal Jain, Vishal Kapoor, Jonathan H Epstein, Thomas Briese, Ziad A Memish, Kevin J Olival, W Ian Lipkin

Source: PLoS ONE, Vol 14, Iss 4, p e0214227 (2019)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/9af1a9bed57940be8ef7e5b867106a37

BacCapSeq: a Platform for Diagnosis and Characterization of Bacterial Infections

Authors: Orchid M. Allicock, Cheng Guo, Anne-Catrin Uhlemann, Susan Whittier, Lokendra V. Chauhan, Joel Garcia, Adam Price, Stephen S. Morse, Nischay Mishra, Thomas Briese, W. Ian Lipkin

Source: mBio, Vol 9, Iss 5 (2018)

Subject Terms: antibiotic resistance, bacterial identification, diagnostics, sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/46f99f6bb6794d3191a38b4ff5ddaf58

Diagnosis of Zika Virus Infection by Peptide Array and Enzyme-Linked Immunosorbent Assay

Authors: Nischay Mishra, Adrian Caciula, Adam Price, Riddhi Thakkar, James Ng, Lokendra V. Chauhan, Komal Jain, Xiaoyu Che, Diego A. Espinosa, Magelda Montoya Cruz, Angel Balmaseda, Eric H. Sullivan, Jigar J. Patel, Richard G. Jarman, Jennifer L. Rakeman, Christina T. Egan, Chantal B. E. M. Reusken, Marion P. G. Koopmans, Eva Harris, Rafal Tokarz, Thomas Briese, W. Ian Lipkin

Source: mBio, Vol 9, Iss 2 (2018)

Subject Terms: arbovirus, emerging infectious diseases, flavivirus, serology, Zika, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/b09d562b006747a79f5be39b615d3603

Erratum for Briese et al., 'Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis'

Authors: Thomas Briese, Amit Kapoor, Nischay Mishra, Komal Jain, Arvind Kumar, Omar J. Jabado, W. Ian Lipkin

Source: mBio, Vol 8, Iss 3 (2017)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/1c1cb86acf7344278181d4c59b07e33e

Middle East Respiratory Syndrome Coronavirus in Bats, Saudi Arabia

Authors: Ziad A. Memish, Nischay Mishra, Kevin J. Olival, Shamsudeen F. Fagbo, Vishal Kapoor, Jonathan H. Epstein, Rafat AlHakeem, Abdulkareem Durosinloun, Mushabab Al Asmari, Ariful Islam, Amit Kapoor, Thomas Briese, Peter Daszak, Abdullah A. Al Rabeeah, W. Ian Lipkin

Source: Emerging Infectious Diseases, Vol 19, Iss 11, Pp 1819-1823 (2013)

Subject Terms: coronavirus, bats, Middle East respiratory syndrome, MERS, Saudi Arabia, MERS CoV, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/19/11/13-1172_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/684895ed37b342d79fc2e39f12456d15