Disruption of cellular plasticity by repeat RNAs in human pancreatic cancer

Authors: You, Eunae, Danaher, Patrick, Lu, Chenyue, Sun, Siyu, Zou, Luli, Phillips, Ildiko E., Rojas, Alexandra S., Ho, Natalie I., Song, Yuhui, Raabe, Michael J., Xu, Katherine H., Richieri, Peter M., Li, Hao, Aston, Natalie, Porter, Rebecca L., Patel, Bidish K., Nieman, Linda T., Schurman, Nathan, Hudson, Briana M., North, Khrystyna, Church, Sarah E., Deshpande, Vikram, Liss, Andrew S., Kim, Tae K., Cui, Yi, Kim, Youngmi, Greenbaum, Benjamin D., Aryee, Martin J., Ting, David T.

Source: In Cell 12 December 2024 187(25):7232-7247

Cancer cells restrict immunogenicity of retrotransposon expression via distinct mechanisms

Authors: Sun, Siyu ^{1, 18, ∗}, You, Eunae ^{2, 18}, Hong, Jungeui ^{3, 4}, Hoyos, David ⁵, Del Priore, Isabella ⁶, Tsanov, Kaloyan M. ⁷, Mattagajasingh, Om ⁸, Di Gioacchino, Andrea ⁹, Marhon, Sajid A. ¹⁰, Chacon-Barahona, Jonathan ⁵, Li, Hao ¹, Jiang, Hua ¹¹, Hozeifi, Samira ¹², Rosas-Bringas, Omar ¹², Xu, Katherine H. ², Song, Yuhui ², Lang, Evan R. ², Rojas, Alexandra S. ², Nieman, Linda T. ², Patel, Bidish K. ², Murali, Rajmohan ¹³, Chanda, Pharto ¹³, Karacay, Ali ¹³, Vabret, Nicolas ¹⁵, De Carvalho, Daniel D. ^{10, 14}, Zenklusen, Daniel ⁸, LaCava, John ^{11, 12, 19}, Lowe, Scott W. ^{7, 16, 19}, Ting, David T. ^{2, 19}, Iacobuzio-Donahue, Christine A. ^{3, 4, 13, 19}, Solovyov, Alexander ^{1, 19}, Greenbaum, Benjamin D. ^{1, 17, 19, 20, ∗∗}

Source: In Immunity 10 December 2024 57(12):2879-2894

Spatial transcriptomics reveals distinct tissue niches linked with steroid responsiveness in acute gastrointestinal GVHD

Authors: Patel, Bidish K. ¹, Raabe, Michael J. ¹, Lang, Evan R. ¹, Song, Yuhui ¹, Lu, Chenyue ¹, Deshpande, Vikram ², Nieman, Linda T. ¹, Aryee, Martin J. ^{3, 4}, Chen, Yi-Bin ⁵, Ting, David T. ^{1, 6, ∗}, DeFilipp, Zachariah ^{5, ∗∗}

Source: In Blood 23 November 2023 142(21):1831-1844

TGF-β in the microenvironment induces a physiologically occurring immune-suppressive senescent state

Authors: Matsuda, Satoru, Revandkar, Ajinkya, Dubash, Taronish D., Ravi, Arvind, Wittner, Ben S., Lin, Maoxuan, Morris, Robert, Burr, Risa, Guo, Hongshan, Seeger, Karsen, Szabolcs, Annamaria, Che, Dante, Nieman, Linda, Getz, Gad A., Ting, David T., Lawrence, Michael S., Gainor, Justin, Haber, Daniel A., Maheswaran, Shyamala

Source: In Cell Reports 28 March 2023 42(3)

Combined analysis of circulating tumor cells and PSMA imaging metrics to predict efficacy of 177 Lu-PSMA-617 in metastatic prostate cancer.

Authors: Miyazawa, Yoshiyuki, Könik, Arda, Guan, Zoe, Chamseddine, Ibrahim, Otani, Keisuke, Otani, Yukako S, Pittie, Rea, Chung, Ella, Rodden, Daniel J, Nieman, Linda, Xu, Katherine Huang, Shan, Mythreayi, Lee, Richard J., Gao, Xin, Heidari, Pedram, Juric, Dejan, Miller, Miles A, Ng, Thomas SC, Miyamoto, David T

Source: Journal of Clinical Oncology; 2/20/2025 Supplement 5, Vol. 43, p215-215, 288p

NR4A1 regulates expression of immediate early genes, suppressing replication stress in cancer

Authors: Guo, Hongshan, Golczer, Gabriel, Wittner, Ben S., Langenbucher, Adam, Zachariah, Marcus, Dubash, Taronish D., Hong, Xin, Comaills, Valentine, Burr, Risa, Ebright, Richard Y., Horwitz, Elad, Vuille, Joanna A., Hajizadeh, Soroush, Wiley, Devon F., Reeves, Brittany A., Zhang, Jia-min, Niederhoffer, Kira L., Lu, Chenyue, Wesley, Benjamin, Ho, Uyen, Nieman, Linda T., Toner, Mehmet, Vasudevan, Shobha, Zou, Lee, Mostoslavsky, Raul, Maheswaran, Shyamala, Lawrence, Michael S., Haber, Daniel A.

Source: In Molecular Cell 7 October 2021 81(19):4041-4058

Spatially organized multicellular immune hubs in human colorectal cancer

Authors: Pelka, Karin, Hofree, Matan, Chen, Jonathan H., Sarkizova, Siranush, Pirl, Joshua D., Jorgji, Vjola, Bejnood, Alborz, Dionne, Danielle, Ge, William H., Xu, Katherine H., Chao, Sherry X., Zollinger, Daniel R., Lieb, David J., Reeves, Jason W., Fuhrman, Christopher A., Hoang, Margaret L., Delorey, Toni, Nguyen, Lan T., Waldman, Julia, Klapholz, Max, Wakiro, Isaac, Cohen, Ofir, Albers, Julian, Smillie, Christopher S., Cuoco, Michael S., Wu, Jingyi, Su, Mei-ju, Yeung, Jason, Vijaykumar, Brinda, Magnuson, Angela M., Asinovski, Natasha, Moll, Tabea, Goder-Reiser, Max N., Applebaum, Anise S., Brais, Lauren K., DelloStritto, Laura K., Denning, Sarah L., Phillips, Susannah T., Hill, Emma K., Meehan, Julia K., Frederick, Dennie T., Sharova, Tatyana, Kanodia, Abhay, Todres, Ellen Z., Jané-Valbuena, Judit, Biton, Moshe, Izar, Benjamin, Lambden, Conner D., Clancy, Thomas E., Bleday, Ronald, Melnitchouk, Nelya, Irani, Jennifer, Kunitake, Hiroko, Berger, David L., Srivastava, Amitabh, Hornick, Jason L., Ogino, Shuji, Rotem, Asaf, Vigneau, Sébastien, Johnson, Bruce E., Corcoran, Ryan B., Sharpe, Arlene H., Kuchroo, Vijay K., Ng, Kimmie, Giannakis, Marios, Nieman, Linda T., Boland, Genevieve M., Aguirre, Andrew J., Anderson, Ana C., Rozenblatt-Rosen, Orit, Regev, Aviv, Hacohen, Nir

Source: In Cell 2 September 2021 184(18):4734-4752

Epithelial to mesenchymal plasticity and differential response to therapies in pancreatic ductal adenocarcinoma

Authors: Porter, Rebecca L., Magnus, Neelima K. C., Thapar, Vishal, Morris, Robert, Szabolcs, Annamaria, Neyaz, Azfar, Kulkarni, Anupriya S., Tai, Eric, Chougule, Abhijit, Hillis, Alessandra, Golczer, Gabriel, Guo, Hongshan, Yamada, Teppei, Kurokawa, Tomohiro, Yashaswini, Chittampalli, Ligorio, Matteo, Vo, Kevin D., Nieman, Linda, Liss, Andrew S., Deshpande, Vikram, Lawrence, Michael S., Maheswaran, Shyamala, Castillo, Carlos Fernandez-Del, Hong, Theodore S., Ryan, David P., O’Dwyer, Peter J., Drebin, Jeffrey A., Ferrone, Cristina R., Haber, Daniel A., Ting, David T.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2019 Dec . 116(52), 26835-26845.

Access URL: https://www.jstor.org/stable/26897161

Stromal Microenvironment Shapes the Intratumoral Architecture of Pancreatic Cancer

Authors: Ligorio, Matteo, Sil, Srinjoy, Malagon-Lopez, Jose, Nieman, Linda T., Misale, Sandra, Di Pilato, Mauro, Ebright, Richard Y., Karabacak, Murat N., Kulkarni, Anupriya S., Liu, Ann, Vincent Jordan, Nicole, Franses, Joseph W., Philipp, Julia, Kreuzer, Johannes, Desai, Niyati, Arora, Kshitij S., Rajurkar, Mihir, Horwitz, Elad, Neyaz, Azfar, Tai, Eric, Magnus, Neelima K.C., Vo, Kevin D., Yashaswini, Chittampalli N., Marangoni, Francesco, Boukhali, Myriam, Fatherree, Jackson P., Damon, Leah J., Xega, Kristina, Desai, Rushil, Choz, Melissa, Bersani, Francesca, Langenbucher, Adam, Thapar, Vishal, Morris, Robert, Wellner, Ulrich F., Schilling, Oliver, Lawrence, Michael S., Liss, Andrew S., Rivera, Miguel N., Deshpande, Vikram, Benes, Cyril H., Maheswaran, Shyamala, Haber, Daniel A., Fernandez-Del-Castillo, Carlos, Ferrone, Cristina R., Haas, Wilhelm, Aryee, Martin J., Ting, David T.

Source: In Cell 27 June 2019 178(1):160-175

Microfluidic concentration and separation of circulating tumor cell clusters from large blood volumesElectronic supplementary information (ESI) available. See DOI: 10.1039/c9lc01122f

Authors: Edd, Jon F., Mishra, Avanish, Dubash, Taronish D., Herrera, Stefan, Mohammad, Ridhwan, Williams, E. Kendall, Hong, Xin, Mutlu, Baris R., Walsh, John R., Machado de Carvalho, Fernanda, Aldikacti, Berent, Nieman, Linda T., Stott, Shannon L., Kapur, Ravi, Maheswaran, Shyamala, Haber, Daniel A., Toner, Mehmet

Source: Lab on a chip. 20(3):558-567

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100098707654.0x000001&indx=1&recIds=ETOCvdc_100098707654.0x000001

SETD1A protects from senescence through regulation of the mitotic gene expression program

Authors: Tajima, Ken, Matsuda, Satoru, Yae, Toshifumi, Drapkin, Benjamin, Morris, Robert, Boukhali, Myriam, Niederhoffer, Kira, Comaills, Valentine, Dubash, Taronish, Nieman, Linda, Guo, Hongshan, Magnus, Neelima, Dyson, Nick, Shioda, Toshihiro, Haas, Wilhelm, Haber, Daniel, Maheswaran, Shyamala

Source: Nature communications. 10(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182783990.0x000001&indx=1&recIds=ETOCvdc_100182783990.0x000001

Molecular signatures of circulating melanoma cells for monitoring early response to immune checkpoint therapy

Authors: Hong, Xin, Sullivan, Ryan J., Kalinich, Mark, Kwan, Tanya Todorova, Giobbie-Hurder, Anita, Pan, Shiwei, LiCausi, Joseph A., Milner, John D., Nieman, Linda T., Wittner, Ben S., Ho, Uyen, Chen, Tianqi, Kapur, Ravi, Lawrence, Donald P., Flaherty, Keith T., Sequist, Lecia V., Ramaswamy, Sridhar, Miyamoto, David T., Lawrence, Michael, Toner, Mehmet, Isselbacher, Kurt J., Maheswaran, Shyamala, Haber, Daniel A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Mar 01. 115(10), 2467-2472.

Access URL: https://www.jstor.org/stable/26507862

An apertureless near-field scanning optical microscope and its application to surface-enhanced Raman spectroscopy and multiphoton fluorescence imaging.

Authors: Nieman, Linda T., Krampert, Gerthard M., Martinez, Robert E.

Source: Review of Scientific Instruments; March 2001, Vol. 72 Issue 3, p1691-1699, 9p

Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy

Authors: Chen, Jonathan H., Nieman, Linda T., Spurrell, Maxwell, Jorgji, Vjola, Elmelech, Liad, Richieri, Peter, Xu, Katherine H., Madhu, Roopa, Parikh, Milan, Zamora, Izabella, Mehta, Arnav, Nabel, Christopher S., Freeman, Samuel S., Pirl, Joshua D., Lu, Chenyue, Meador, Catherine B., Barth, Jaimie L., Sakhi, Mustafa, Tang, Alexander L., Sarkizova, Siranush, Price, Colles, Fernandez, Nicolas F., Emanuel, George, He, Jiang, Van Raay, Katrina, Reeves, Jason W., Yizhak, Keren, Hofree, Matan, Shih, Angela, Sade-Feldman, Moshe, Boland, Genevieve M., Pelka, Karin, Aryee, Martin J., Mino-Kenudson, Mari, Gainor, Justin F., Korsunsky, Ilya, Hacohen, Nir

Source: Nature Immunology; April 2024, Vol. 25 Issue: 4 p644-658, 15p

Immune responses in checkpoint myocarditis across heart, blood and tumour

Authors: Blum, Steven M., Zlotoff, Daniel A., Smith, Neal P., Kernin, Isabela J., Ramesh, Swetha, Zubiri, Leyre, Caplin, Joshua, Samanta, Nandini, Martin, Sidney, Wang, Mike, Tirard, Alice, Song, Yuhui, Xu, Katherine H., Barth, Jaimie, Sen, Pritha, Slowikowski, Kamil, Tantivit, Jessica, Manakongtreecheep, Kasidet, Arnold, Benjamin Y., Nasrallah, Mazen, Pinto, Christopher J., McLoughlin, Daniel, Jackson, Monica, Chan, PuiYee, Lawless, Aleigha, Michaud, William A., Sharova, Tatyana, Nieman, Linda T., Gainor, Justin F., Wu, Catherine J., Juric, Dejan, Mino-Kenudson, Mari, Oliveira, Giacomo, Sullivan, Ryan J., Boland, Genevieve M., Stone, James R., Thomas, Molly F., Neilan, Tomas G., Reynolds, Kerry L., Villani, Alexandra-Chloé

Source: Nature; 20240101, Issue: Preprints p1-9, 9p

Single-cell transcriptomic analyses reveal distinct immune cell contributions to epithelial barrier dysfunction in checkpoint inhibitor colitis

Authors: Thomas, Molly Fisher, Slowikowski, Kamil, Manakongtreecheep, Kasidet, Sen, Pritha, Samanta, Nandini, Tantivit, Jessica, Nasrallah, Mazen, Zubiri, Leyre, Smith, Neal P., Tirard, Alice, Ramesh, Swetha, Arnold, Benjamin Y., Nieman, Linda T., Chen, Jonathan H., Eisenhaure, Thomas, Pelka, Karin, Song, Yuhui, Xu, Katherine H., Jorgji, Vjola, Pinto, Christopher J., Sharova, Tatyana, Glasser, Rachel, Chan, PuiYee, Sullivan, Ryan J., Khalili, Hamed, Juric, Dejan, Boland, Genevieve M., Dougan, Michael, Hacohen, Nir, Li, Bo, Reynolds, Kerry L., Villani, Alexandra-Chloé

Source: Nature Medicine; 20240101, Issue: Preprints p1-14, 14p

IDH-mutant gliomas harbor fewer regulatory T cells in humans and mice

Authors: Richardson, Leland G., Nieman, Linda T., Stemmer-Rachamimov, Anat O., Zheng, Xijin S., Stafford, Khalifa, Nagashima, Hiroaki, Miller, Julie J., Kiyokawa, Juri, Ting, David T., Wakimoto, Hiroaki, Cahill, Daniel P., Choi, Bryan D., Curry, William T.

Source: Oncoimmunology. 9(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100132047219.0x000001&indx=1&recIds=ETOCvdc_100132047219.0x000001

JOHNSON, JAMES WELDON

Authors: Nieman Linda

Source: The Reader's Companion to American History.

Availability: https://search.credoreference.com/content/entry/rcah/johnson_james_weldon/0

LAWRENCE, JACOB

Authors: Nieman Linda

Source: The Reader's Companion to American History.

Availability: https://search.credoreference.com/content/entry/rcah/lawrence_jacob/0

In vivo Hyperspectral Confocal Fluorescence Imaging to Determine Pigment Localization and Distribution in Cyanobacterial Cells

Authors: Vermaas, Wim F. J., Timlin, Jerilyn A., Jones, Howland D. T., Sinclair, Michael B., Nieman, Linda T., Hamad, Sawsan W., Melgaard, David K., Haaland, David M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2008 Mar 01. 105(10), 4050-4055.

Access URL: https://www.jstor.org/stable/25461364