Design, construction, and functional characterization of a tRNA neochromosome in yeast

Authors: Schindler, Daniel, Walker, Roy S.K., Jiang, Shuangying, Brooks, Aaron N., Wang, Yun, Müller, Carolin A., Cockram, Charlotte, Luo, Yisha, García, Alicia, Schraivogel, Daniel, Mozziconacci, Julien, Pena, Noah, Assari, Mahdi, Sánchez Olmos, María del Carmen, Zhao, Yu, Ballerini, Alba, Blount, Benjamin A., Cai, Jitong, Ogunlana, Lois, Liu, Wei, Jönsson, Katarina, Abramczyk, Dariusz, Garcia-Ruiz, Eva, Turowski, Tomasz W., Swidah, Reem, Ellis, Tom, Pan, Tao, Antequera, Francisco, Shen, Yue, Nieduszynski, Conrad A., Koszul, Romain, Dai, Junbiao, Steinmetz, Lars M., Boeke, Jef D., Cai, Yizhi

Source: In Cell 22 November 2023 186(24):5237-5253

Sir2 mitigates an intrinsic imbalance in origin licensing efficiency between early- and late-replicating euchromatin

Authors: Hoggard, Timothy, Müller, Carolin A., Nieduszynski, Conrad A., Weinreich, Michael, Fox, Catherine A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2020 Jun . 117(25), 14314-14321.

Access URL: https://www.jstor.org/stable/26934960

Tos4 mediates gene expression homeostasis through interaction with HDAC complexes independently of H3K56 acetylation

Authors: Cooke, Sophie L., Soares, Barbara L., Müller, Carolin A., Nieduszynski, Conrad A., Bastos de Oliveira, Francisco M., de Bruin, Robertus A.M.

Source: In Journal of Biological Chemistry January-June 2021 296

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

Authors: Müller, Carolin, Boemo, Michael, Spingardi, Paolo, Kessler, Benedikt, Kriaucionis, Skirmantas, Simpson, Jared, Nieduszynski, Conrad

Source: Nature methods. 16(5):429-436

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100135426923.0x000001&indx=1&recIds=ETOCvdc_100135426923.0x000001

Genome-wide analysis of DNA replication timing in single cells: Yes! We're all individuals

Authors: Donaldson, Anne, Nieduszynski, Conrad

Source: Genome biology. 20(1):1-4

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100188101718.0x000001&indx=1&recIds=ETOCvdc_100188101718.0x000001

Interspecies conservation of organisation and function between nonhomologous regional centromeres

Authors: Tong, Pin, Pidoux, Alison, Toda, Nicholas, Ard, Ryan, Berger, Harald, Shukla, Manu, Torres-Garcia, Jesus, Müller, Carolin, Nieduszynski, Conrad, Allshire, Robin

Source: Nature communications. 10(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100153444549.0x000001&indx=1&recIds=ETOCvdc_100153444549.0x000001

Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome

Authors: Shen, Yue, Wang, Yun, Chen, Tai, Gao, Feng, Gong, Jianhui, Abramczyk, Dariusz, Walker, Roy, Zhao, Hongcui, Chen, Shihong, Liu, Wei, Luo, Yisha, Müller, Carolin A., Paul-Dubois-Taine, Adrien, Alver, Bonnie, Stracquadanio, Giovanni, Mitchell, Leslie A., Luo, Zhouqing, Fan, Yanqun, Zhou, Baojin, Wen, Bo, Tan, Fengji, Wang, Yujia, Zi, Jin, Xie, Zexiong, Li, Bingzhi, Yang, Kun, Richardson, Sarah M., Jiang, Hui, French, Christopher E., Nieduszynski, Conrad A., Koszul, Romain, Marston, Adele L., Yuan, Yingjin, Wang, Jian, Bader, Joel S., Dai, Junbiao, Boeke, Jef D., Xu, Xun, Cai, Yizhi, Yang, Huanming

Source: Science, 2017 Mar 01. 355(6329), 1047-1047.

Access URL: https://www.jstor.org/stable/24918495

Schizosaccharomyces versatilis represents a distinct evolutionary lineage of fission yeast.

Authors: Etherington, Graham J., Gil, Elisa Gomez, Haerty, Wilfried, Oliferenko, Snezhana, Nieduszynski, Conrad A.

Source: Yeast; Mar2024, Vol. 41 Issue 3, p95-107, 13p

Telomere‐to‐telomere Schizosaccharomyces japonicus genome assembly reveals hitherto unknown genome features.

Authors: Etherington, Graham J., Wu, Pei‐Shang, Oliferenko, Snezhana, Uhlmann, Frank, Nieduszynski, Conrad A.

Source: Yeast; Mar2024, Vol. 41 Issue 3, p73-86, 14p

DNA replication timing influences gene expression level

Authors: Müller, Carolin A., Nieduszynski, Conrad A.

Source: Journal of cell biology. 216(7):1907-1914

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN612065791&indx=1&recIds=ETOCRN612065791

High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination

Authors: Hawkins, Michelle, Retkute, Renata, Müller, Carolin A., Saner, Nazan, Tanaka, Tomoyuki U., de Moura, Alessandro P.S., Nieduszynski, Conrad A.

Source: In Cell Reports 27 November 2013 5(4):1132-1141

Kinetochores Coordinate Pericentromeric Cohesion and Early DNA Replication by Cdc7-Dbf4 Kinase Recruitment

Authors: Natsume, Toyoaki, Müller, Carolin A., Katou, Yuki, Retkute, Renata, Gierliński, Marek, Araki, Hiroyuki, Blow, J. Julian, Shirahige, Katsuhiko, Nieduszynski, Conrad A., Tanaka, Tomoyuki U.

Source: In Molecular Cell 6 June 2013 50(5):661-674

Comparative Functional Genomics of the Fission Yeasts

Authors: Rhind, Nicholas, Chen, Zehua, Yassour, Moran, Thompson, Dawn A., Haas, Brian J., Habib, Naomi, Wapinski, Ilan, Roy, Sushmita, Lin, Michael F., Heiman, David I., Young, Sarah K., Furuya, Kanji, Guo, Yabin, Pidoux, Alison, Chen, Huei Mei, Robbertse, Barbara, Goldberg, Jonathan M., Aoki, Keita, Bayne, Elizabeth H., Berlin, Aaron M., Desjardins, Christopher A., Dobbs, Edward, Dukaj, Livio, Fan, Lin, FitzGerald, Michael G., French, Courtney, Gujja, Sharvari, Hansen, Klavs, Keifenheim, Dan, Levin, Joshua Z., Mosher, Rebecca A., Müller, Carolin A., Pfiffner, Jenna, Priest, Margaret, Russ, Carsten, Smialowska, Agata, Swoboda, Peter, Sykes, Sean M., Vaughn, Matthew, Vengrova, Sonya, Yoder, Ryan, Zeng, Qiandong, Allshire, Robin, Baulcombe, David, Birren, Bruce W., Brown, William, Ekwall, Karl, Kellis, Manolis, Leatherwood, Janet, Levin, Henry, Margalit, Hanah, Martienssen, Rob, Nieduszynski, Conrad A., Spatafora, Joseph W., Friedman, Nir, Dalgaard, Jacob Z., Baumann, Peter, Niki, Hironori, Regev, Aviv, Nusbaum, Chad

Source: Science, 2011 May . 332(6032), 930-936.

Access URL: http://dx.doi.org/10.1126/science.1203357

From sequence to function: Insights from natural variation in budding yeasts

Authors: Nieduszynski, Conrad A., Liti, Gianni

Source: In BBA - General Subjects October 2011 1810(10):959-966

Genome-wide identification of replication origins in yeast by comparative genomics.

Authors: Nieduszynski, Conrad A., Knox, Yvonne, Donaldson, Anne D.

Source: Genes & Development; July 15 2006, Vol. 20 Issue 14, p1874-1879, 6p

Ku complex controls the replication time of DNA in telomere regions.

Authors: Cosgrove, Andrew J., Nieduszynski, Conrad A., Donaldson, Anne D.

Source: Genes & Development; October 1 2002, Vol. 16 Issue 19, p2485-2490, 6p

Asymmetry Indices for Analysis and Prediction of Replication Origins in Eukaryotic Genomes.

Authors: Marsolier-Kergoat, Marie-Claude¹ mcmk@cea.fr, Nieduszynski, Conrad A.²

Source: PLoS ONE. Sep2012, Vol. 7 Issue 9, Special section p1-11. 11p.

Subject Terms: *DNA replication, *SACCHAROMYCES cerevisiae, *KLUYVEROMYCES marxianus, *YEAST research, *EUKARYOTES, *GENOMICS

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