Average Nucleotide Identity and Digital DNA-DNA Hybridization Analysis Following PromethION Nanopore-Based Whole Genome Sequencing Allows for Accurate Prokaryotic Typing

Authors: Nick Versmessen, Marieke Mispelaere, Marjolein Vandekerckhove, Cedric Hermans, Jerina Boelens, Katleen Vranckx, Filip Van Nieuwerburgh, Mario Vaneechoutte, Paco Hulpiau, Piet Cools

Source: Diagnostics, Vol 14, Iss 16, p 1800 (2024)

Subject Terms: Escherichia coli, whole genome sequencing, multi-locus sequence typing, antibiotic resistance, species delineation, average nucleotide identity, Medicine (General), R5-920

File Description: electronic resource

Relation: https://www.mdpi.com/2075-4418/14/16/1800; https://doaj.org/toc/2075-4418

Access URL: https://doaj.org/article/73acf6921a3b400fb8de34ac3161dc25

Pooling isolates to address the diversity in antimicrobial susceptibility of Pseudomonas aeruginosa in cystic fibrosis

Authors: Sara Van den Bossche, Emmanuel Abatih, Lucia Grassi, Emma De Broe, Petra Rigole, Jerina Boelens, Joris Van Caenegem, Bruno Verhasselt, Iris Janssens, Eva Van Braeckel, Nick Versmessen, Piet Cools, Tom Coenye, Aurélie Crabbé

Source: Microbiology Spectrum, Vol 11, Iss 6 (2023)

Subject Terms: antibiotic susceptibility testing, Pseudomonas aeruginosa, diversity, minimal inhibitory concentration, pooling isolates, cystic fibrosis, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/79088f7fd5e14ba3aa48a7a1b373460d