TADBay: A Bayesian Construction of Topologically Associated Domains

Authors: Soto, Carlos, Bryner, Darshan, Dalgarno, Audrey, Neretti, Nicola, Srivastava, Anuj

Source: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :233-240 Dec, 2022

Relation: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Representation of Chromosome Conformations Using a Shape Alphabet Across Modeling Methods

Authors: Soto, Carlos, Dalgarno, Audrey, Bryner, Darshan, McLaughlin, Benjamin, Neretti, Nicola, Srivastava, Anuj

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :151-156 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Expression of retrotransposons contributes to aging in Drosophila.

Authors: Schneider, Blair K.¹, Shixiang Sun², Moonsook Lee², Wenge Li³, Skvir, Nicholas⁴, Neretti, Nicola⁴, Vijg, Jan^2,5, Secombe, Julie^1,6, julie.secombe@einsteinmed.edu

Source: Genetics; Jun2023, Vol. 224 Issue 2, p1-15, 15p

The three-dimensional organization of the genome in cellular senescence and age-associated diseases

Authors: Evans, Shane A., Horrell, Jeremy, Neretti, Nicola

Source: In Seminars in Cell and Developmental Biology June 2019 90:154-160

LINE1 Derepression in Aged Wild-Type and SIRT6-Deficient Mice Drives Inflammation

Authors: Simon, Matthew, Van Meter, Michael, Ablaeva, Julia, Ke, Zhonghe, Gonzalez, Raul S., Taguchi, Taketo, De Cecco, Marco, Leonova, Katerina I., Kogan, Valeria, Helfand, Stephen L., Neretti, Nicola, Roichman, Asael, Cohen, Haim Y., Meer, Margarita V., Gladyshev, Vadim N., Antoch, Marina P., Gudkov, Andrei V., Sedivy, John M., Seluanov, Andrei, Gorbunova, Vera

Source: In Cell Metabolism 2 April 2019 29(4):871-885

Regulation of Cellular Senescence by Polycomb Chromatin Modifiers through Distinct DNA Damage- and Histone Methylation-Dependent Pathways

Authors: Ito, Takahiro, Teo, Yee Voan, Evans, Shane A., Neretti, Nicola, Sedivy, John M.

Source: In Cell Reports 27 March 2018 22(13):3480-3492

Delay Accuracy in Bat Sonar Is Related to the Reciprocal of Normalized Echo Bandwidth, or Q

Authors: Simmons, James A., Neretti, Nicola, Intrator, Nathan, Altes, Richard A., Ferragamo, Michael J., Sanderson, Mark I., Griffin, Donald R.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2004 Mar 01. 101(10), 3638-3643.

Access URL: https://www.jstor.org/stable/3371532

The Chromatin Landscape of Cellular Senescence

Authors: Criscione, Steven W., Teo, Yee Voan, Neretti, Nicola

Source: In Trends in Genetics November 2016 32(11):751-761

Chromatin-modifying genetic interventions suppress age-associated transposable element activation and extend life span in Drosophila

Authors: Wood, Jason G., Jones, Brian C., Jiang, Nan, Chang, Chengyi, Hosier, Suzanne, Wickremesinghe, Priyan, Garcia, Meyrolin, Hartnett, Davis A., Burhenn, Lucas, Neretti, Nicola, Helfand, Stephen L.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2016 Oct 01. 113(40), 11277-11282.

Access URL: https://www.jstor.org/stable/26471938

Heterogeneity of increased biological age in type 2 diabetes correlates with differential tissue DNA methylation, biological variables, and pharmacological treatments.

Authors: Cortez, Briana N., Pan, Hui, Hinthorn, Samuel, Sun, Han, Neretti, Nicola, Gloyn, Anna L., Aguayo-Mazzucato, Cristina

Source: GeroScience; Apr2024, Vol. 46 Issue 2, p2441-2461, 21p

Subject Terms: TYPE 2 diabetes, DNA methylation, DRUG therapy

Reduced Expression of MYC Increases Longevity and Enhances Healthspan

Authors: Hofmann, Jeffrey W., Zhao, Xiaoai, De Cecco, Marco, Peterson, Abigail L., Pagliaroli, Luca, Manivannan, Jayameenakshi, Hubbard, Gene B., Ikeno, Yuji, Zhang, Yongqing, Feng, Bin, Li, Xiaxi, Serre, Thomas, Qi, Wenbo, Van Remmen, Holly, Miller, Richard A., Bath, Kevin G., de Cabo, Rafael, Xu, Haiyan, Neretti, Nicola, Sedivy, John M.

Source: In Cell 29 January 2015 160(3):477-488

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Transcriptional response to dietary restriction in Drosophila melanogaster

Authors: Ding, Feifei, Gil, M. Pilar, Franklin, Michael, Ferreira, Jonathan, Tatar, Marc, Helfand, Stephen L., Neretti, Nicola

Source: In Journal of Insect Physiology October 2014 69:101-106

Enhancement of radiation effect on cancer cells by gold-pHLIP

Authors: Antosh, Michael P., Wijesinghe, Dayanjali D., Shrestha, Samana, Lanou, Robert, Huang, Yun Hu, Hasselbacher, Thomas, Fox, David, Neretti, Nicola, Sun, Shouheng, Katenka, Natallia, Cooper, Leon N, Andreev, Oleg A., Reshetnyak, Yana K.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2015 Apr . 112(17), 5372-5376.

Access URL: https://www.jstor.org/stable/26462565

takeout-dependent longevity is associated with altered Juvenile Hormone signaling

Authors: Chamseddin, Khalil H., Khan, Sabina Q., Nguyen, Mai L.H., Antosh, Michael, Morris, Siti Nur Sarah, Kolli, Santharam, Neretti, Nicola, Helfand, Stephen L., Bauer, Johannes H.

Source: In Mechanisms of Ageing and Development November-December 2012 133(11-12):637-646

Long-Lived Indy and Calorie Restriction Interact to Extend Life Span

Authors: Wang, Pei-Yu, Neretti, Nicola, Whitaker, Rachel, Hosier, Suzanne, Chang, Chengyi, Lu, Daniel, Rogina, Blanka, Helfand, Stephen L., Cooper, Leon N.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2009 Jun 01. 106(23), 9262-9267.

Access URL: https://www.jstor.org/stable/40483203

Long-Lived Indy Induces Reduced Mitochondrial Reactive Oxygen Species Production and Oxidative Damage

Authors: Neretti, Nicola, Wang, Pei-Yu, Brodsky, Alexander S., Nyguyen, Hieu H., White, Kevin P., Rogina, Blanka, Helfand, Stephen L., Cooper, Leon N.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2009 Feb . 106(7), 2277-2282.

Access URL: https://www.jstor.org/stable/40272662

SenNet recommendations for detecting senescent cells in different tissues

Authors: Suryadevara, Vidyani, Hudgins, Adam D., Rajesh, Adarsh, Pappalardo, Alberto, Karpova, Alla, Dey, Amit K., Hertzel, Ann, Agudelo, Anthony, Rocha, Azucena, Soygur, Bikem, Schilling, Birgit, Carver, Chase M., Aguayo-Mazzucato, Cristina, Baker, Darren J., Bernlohr, David A., Jurk, Diana, Mangarova, Dilyana B., Quardokus, Ellen M., Enninga, Elizabeth Ann L., Schmidt, Elizabeth L., Chen, Feng, Duncan, Francesca E., Cambuli, Francesco, Kaur, Gagandeep, Kuchel, George A., Lee, Gung, Daldrup-Link, Heike E., Martini, Helene, Phatnani, Hemali, Al-Naggar, Iman M., Rahman, Irfan, Nie, Jia, Passos, João F., Silverstein, Jonathan C., Campisi, Judith, Wang, Julia, Iwasaki, Kanako, Barbosa, Karina, Metis, Kay, Nernekli, Kerem, Niedernhofer, Laura J., Ding, Li, Wang, Lichao, Adams, Lisa C., Ruiyang, Liu, Doolittle, Madison L., Teneche, Marcos G., Schafer, Marissa J., Xu, Ming, Hajipour, Mohammadjavad, Boroumand, Mozhgan, Basisty, Nathan, Sloan, Nicholas, Slavov, Nikolai, Kuksenko, Olena, Robson, Paul, Gomez, Paul T., Vasilikos, Periklis, Adams, Peter D., Carapeto, Priscila, Zhu, Quan, Ramasamy, Ramalakshmi, Perez-Lorenzo, Rolando, Fan, Rong, Dong, Runze, Montgomery, Ruth R., Shaikh, Sadiya, Vickovic, Sanja, Yin, Shanshan, Kang, Shoukai, Suvakov, Sonja, Khosla, Sundeep, Garovic, Vesna D., Menon, Vilas, Xu, Yanxin, Song, Yizhe, Suh, Yousin, Dou, Zhixun, Neretti, Nicola

Source: Nature Reviews Molecular Cell Biology; 20240101, Issue: Preprints p1-23, 23p

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LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq.

Authors: McKerrow, Wilson, Kagermazova, Larisa, Doudican, Nicole, Frazzette, Nicholas, Kaparos, Efiyenia Ismini, Evans, Shane A, Rocha, Azucena, Sedivy, John M, Neretti, Nicola, Carucci, John, Boeke, Jef D, Fenyö, David

Source: Nucleic Acids Research; 3/21/2023, Vol. 51 Issue 5, p2033-2045, 13p