Small wonders.

Authors: Marshall, Michael (AUTHOR)

Source: New Scientist. 2/15/2025, Vol. 265 Issue 3530, p34-37. 4p. 5 Color Photographs.

Subjects: CIRCULAR RNA, NUCLEOTIDE sequence, MOLECULAR size, NATURAL selection, STREPTOCOCCUS sanguis

In silico screening system based on a transcription factors regulatory network only using transcriptomic data.

Authors: Nakajima, Tadaaki^1,2 (AUTHOR) nakajima.tad.uu@yokohama-cu.ac.jp, Harada, Kentaro² (AUTHOR), Tomooka, Yasuhiro² (AUTHOR), Sato, Tomomi^1,3 (AUTHOR)

Source: PLoS ONE. 4/7/2025, Vol. 20 Issue 4, p1-16. 16p.

Subject Terms: *HUMAN embryonic stem cells, *NUCLEOTIDE sequence, *PROMOTERS (Genetics), *TRANSCRIPTION factors, *UMBILICAL veins

High Performance of LSTM on Dengue Shock Syndrome Detection Using DNA Sequence Encoding Methods.

Authors: Muflikhah, Lailil¹, lailil@ub.ac.id, Iskandar, Agustin², Yudistira, Novanto¹, Nurdewanto, Bambang³

Source: International Journal of Online & Biomedical Engineering; 2025, Vol. 21 Issue 4, p79-98, 20p

TRIM21 modulates stability of pro-survival non-coding RNA vtRNA1–1 in human hepatocellular carcinoma cells.

Authors: Kong, EunBin¹ (AUTHOR), Polacek, Norbert¹ (AUTHOR) norbert.polacek@unibe.ch

Source: PLoS Genetics. 3/17/2025, Vol. 21 Issue 3, p1-24. 24p.

Subject Terms: *TRIM proteins, *NUCLEOTIDE sequence, *NON-coding RNA, *PROTEIN stability, *LIVER cancer, *PROTEIN-protein interactions

Blockchain-Enabled Privacy-Preserving Ecosystem for DNA Sequence Sharing.

Authors: Nguyen, Thi-Thanh-An¹, Hsieh, Yu-Heng², Tseng, Ching-Hsi^1,2, Lin, Yu-Chen², Yuan, Shyan-Ming², smyuan@cs.nctu.edu.tw

Source: Applied Sciences (2076-3417); Mar2025, Vol. 15 Issue 6, p3193, 21p

A distribution-guided Mapper algorithm.

Authors: Tao, Yuyang¹ (AUTHOR) taoyy2022@shanghaitech.edu.cn, Ge, Shufei¹ (AUTHOR) geshf@shanghaitech.edu.cn

Source: BMC Bioinformatics. 3/5/2025, Vol. 26 Issue 1, p1-19. 19p.

Subject Terms: *GRAPH algorithms, *NUCLEOTIDE sequence, *CORONAVIRUSES, *DATA analysis, *DATA modeling

Detection and In Vivo Validation of Dichorhavirus e-Probes in Meta-Transcriptomic Data via Microbe Finder (MiFi ®) Discovers a Novel Host and a Possible New Strain of Orchid Fleck Virus.

Authors: Roy, Avijit¹ (AUTHOR) jonathan.shao@usda.gov, Shao, Jonathan² (AUTHOR), Espindola, Andres S.^3,4 (AUTHOR) kitty.cardwell@okstate.edu, Ramos Lopez, Daniel^3,4 (AUTHOR), Otero-Colina, Gabriel⁵ (AUTHOR), Rivera, Yazmín⁶ (AUTHOR), Mavrodieva, Vessela A.^6,7 (AUTHOR), Nakhla, Mark K.^1,6 (AUTHOR), Schneider, William L.^2,7 (AUTHOR), Cardwell, Kitty^3,4 (AUTHOR)

Source: Viruses (1999-4915). Mar2025, Vol. 17 Issue 3, p441. 33p.

Subject Terms: *NUCLEOTIDE sequencing, *NUCLEOTIDE sequence, *PLANT viruses, *NUCLEIC acids, *ACID analysis

Caulobacter Strains Code for Novel Restriction Endonucleases That Protect Them from Bacteriophage Infections.

Authors: Sisto, Ian¹ (AUTHOR), Ely, Bert¹ (AUTHOR) ely@sc.edu

Source: Viruses (1999-4915). Mar2025, Vol. 17 Issue 3, p311. 7p.

Subject Terms: *DNA restriction enzymes, *NUCLEOTIDE sequence, *GENETIC code, *DNA methylation, *BACTERIOPHAGES

A Feature Engineering Method for Whole-Genome DNA Sequence with Nucleotide Resolution.

Authors: Wang, Ting^1,2 (AUTHOR), Cui, Yunpeng^1,2 (AUTHOR) cuiyunpeng@caas.cn, Sun, Tan^1,2,3 (AUTHOR), Li, Huan^1,2 (AUTHOR), Wang, Chao^2,3 (AUTHOR), Hou, Ying^1,2,3 (AUTHOR), Wang, Mo^1,2 (AUTHOR), Chen, Li^1,2 (AUTHOR), Wu, Jinming^1,2 (AUTHOR)

Source: International Journal of Molecular Sciences. Mar2025, Vol. 26 Issue 5, p2281. 21p.

Subject Terms: *LANGUAGE models, *NUCLEOTIDE sequence, *WHOLE genome sequencing, *GENETIC variation, *DNA sequencing

Engineering human/simian rotavirus VP7 reassortants in the absence of UTR sequence information.

Authors: Valusenko-Mehrkens, Roman¹, Johne, Reimar¹, Falkenhagen, Alexander¹, alexander.falkenhagen@bfr.bund.de

Source: Applied Microbiology & Biotechnology; 2/27/2025, Vol. 109 Issue 1, p1-11, 11p

Localization of Potential Energy in Hydrogen Bonds of the ATXN2 Gene.

Authors: Drobotenko, Mikhail¹ (AUTHOR) 4098789@mail.ru, Lyasota, Oksana^1,2 (AUTHOR) elkina0131@gmail.com, Dzhimak, Stepan^1,2 (AUTHOR) jimack@mail.ru, Svidlov, Alexandr² (AUTHOR), Baryshev, Mikhail² (AUTHOR), Leontyeva, Olga¹ (AUTHOR), Dorohova, Anna^1,2 (AUTHOR)

Source: International Journal of Molecular Sciences. Feb2025, Vol. 26 Issue 3, p933. 13p.

Subject Terms: *NUCLEOTIDE sequence, *MECHANICAL oscillations, *TRINUCLEOTIDE repeats, *HYDROGEN as fuel, *MECHANICAL energy

BAC-browser: the tool for synthetic biology.

Authors: Semashko, Tatiana A.^1,2 (AUTHOR) t.semashko@gmail.com, Fisunov, Gleb Y.^1,2 (AUTHOR), Shevelev, Georgiy Y.³ (AUTHOR), Govorun, Vadim M.¹ (AUTHOR)

Source: BMC Bioinformatics. 1/23/2025, Vol. 26 Issue 1, p1-14. 14p.

Subject Terms: *AMINO acid sequence, *NUCLEOTIDE sequence, *LIFE sciences, *DNA sequencing, *GENETICS

Expanding the Diversity of Actinobacterial Tectiviridae : A Novel Genus from Microbacterium.

Authors: Washington, Jacqueline M.^1,2 (AUTHOR) amd4008@med.cornell.edu, Basta, Holly³ (AUTHOR) holly.basta@rocky.edu, De Jesus, Angela Bryanne^1,4 (AUTHOR), Bendele, Madison G.⁵ (AUTHOR) bendelmg@dukes.jmu.edu, Cresawn, Steven G.⁵ (AUTHOR) cresawsg@jmu.edu, Ginser, Emily K.⁶ (AUTHOR) emg190@pitt.edu

Source: Viruses (1999-4915). Jan2025, Vol. 17 Issue 1, p113. 18p.

Subject Terms: *TRANSMISSION electron microscopy, *NUCLEOTIDE sequence, *SCIENCE education, *MICROBACTERIUM, *ENVIRONMENTAL sampling

Structural Characterization of B-DNA d(CGTGAATTCACG) 2 in Complex with the Specific Minor Groove Binding Fluorescent Marker Hoechst 33342.

Authors: Sbirkova-Dimitrova, Hristina^1,2, r.rusev93@gmail.comsbirkova@mail.bg, Rusew, Rusi¹, hristo_gerginov@abv.bg, Gerginov, Hristo¹, Heroux, Annie³, annie.heroux@elettra.eu, Shivachev, Boris L.¹, sbirkova@mail.bg

Source: Crystals (2073-4352); Jan2025, Vol. 15 Issue 1, p20, 12p

CGRclust: Chaos Game Representation for twin contrastive clustering of unlabelled DNA sequences.

Authors: Alipour, Fatemeh¹ (AUTHOR) falipour@uwaterloo.ca, Hill, Kathleen A.² (AUTHOR) khill22@uwo.ca, Kari, Lila¹ (AUTHOR) lila.kari@uwaterloo.ca

Source: BMC Genomics. 12/18/2024, Vol. 25 Issue 1, p1-17. 17p.

Subject Terms: *CONVOLUTIONAL neural networks, *NUCLEOTIDE sequence, *IMAGE recognition (Computer vision), *ARTIFICIAL chromosomes, *DNA sequencing

Parallel DNA Synthesis to Produce Multi-Usage Two-Dimensional Barcodes.

Authors: Parlar, Etkin¹, Lietard, Jory¹, jory.lietard@univie.ac.at

Source: Applied Sciences (2076-3417); Dec2024, Vol. 14 Issue 24, p11663, 14p

Tree polynomials identify a link between co-transcriptional R-loops and nascent RNA folding.

Authors: Liu, Pengyu¹ (AUTHOR), Lusk, Jacob¹ (AUTHOR), Jonoska, Nataša² (AUTHOR), Vázquez, Mariel^1,3 (AUTHOR) mrlvazquez@ucdavis.edu

Source: PLoS Computational Biology. 12/13/2024, Vol. 20 Issue 12, p1-24. 24p.

Subject Terms: *NUCLEOTIDE sequence, *NUCLEIC acids, *GENETIC transcription, *SECONDARY analysis, *DNA sequencing

Identification and Molecular Characterization of Telosma Mosaic Virus (TelMV) and East Asian Passiflora Virus (EAPV) from Patchouli in China.

Authors: Aziz, Asma¹ (AUTHOR), Li, Na¹ (AUTHOR), Wang, Xiaoqing¹ (AUTHOR), Wang, Linxi¹ (AUTHOR), Wu, Yougen² (AUTHOR), Zeeshan Ul Haq, Muhammad² (AUTHOR), Dai, Zhaoji¹ (AUTHOR) zhaoji.dai@hainanu.edu.cn, Cui, Hongguang¹ (AUTHOR) zhaoji.dai@hainanu.edu.cn

Source: Viruses (1999-4915). Dec2024, Vol. 16 Issue 12, p1837. 15p.

Subject Terms: *FAVA bean, *NUCLEOTIDE sequence, *CASH crops, *VIRUS diseases, *PROTEIN analysis, *MOSAIC viruses

Assigning Xiuguozhangia (genus incertae sedis) to Pseudoberkleasmiaceae (Dothideomycetes, Pleosporomycetidae, Pleosporales) and introducing X. broussonetiae as a novel species.

Authors: Gomdola, Deecksha^1,2 (AUTHOR), Jeewon, Rajesh^3,4 (AUTHOR), Gentekaki, Eleni⁵ (AUTHOR), S. Jayawardena, Ruvishika² (AUTHOR), Hyde, Kevin D.^2,4 (AUTHOR), Alotibi, Fatimah⁴ (AUTHOR), Wang, Yong⁶ (AUTHOR) yongwangbis@aliyun.com

Source: MycoKeys. 2024, Issue 111, p181-210. 30p.

Subject Terms: *NUCLEOTIDE sequence, *DNA sequencing, *PHYLOGENY, *HYPHOMYCETES, *MORPHOLOGY

A Repetitive Acipenser gueldenstaedtii Genomic Region Aligning with the Acipenser baerii IGLV Gene Cluster Suggests a Role as a Transcription Termination Element Across Several Sturgeon Species.

Authors: Chouljenko, Alexander V.¹ (AUTHOR) avchoulj@ncsu.edu, Stanfield, Brent A.² (AUTHOR) bstanf5@lsu.edu, Melnyk, Tetiana O.^2,3 (AUTHOR) tmelnyk@lsu.edu, Dutta, Ojasvi^2,3 (AUTHOR) odutta@lsu.edu, Chouljenko, Vladimir N.^2,3 (AUTHOR) vchoul1@lsu.edu

Source: International Journal of Molecular Sciences. Dec2024, Vol. 25 Issue 23, p12685. 18p.

Subject Terms: *NUCLEOTIDE sequence, *GENETIC transcription, *ACIPENSER, *GENE clusters, *HUMAN cytomegalovirus