Identifying perturbation targets through causal differential networks

Authors: Wu, Menghua, Padia, Umesh, Murphy, Sean H., Barzilay, Regina, Jaakkola, Tommi

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2410.03380

Efficient delivery of Robotics Programming educational content using Cloud Robotics

Authors: Murphy, Sean, Militano, Leonardo, Toffetti, Giovanni, Maurer, Remo

Subject Terms: Computer Science - Robotics

Access URL: http://arxiv.org/abs/2210.10441

Cloud Native Robotic Applications with GPU Sharing on Kubernetes

Authors: Toffetti, Giovanni, Militano, Leonardo, Murphy, Seán, Maurer, Remo, Straub, Mark

Subject Terms: Computer Science - Robotics, Computer Science - Artificial Intelligence, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Distributed, Parallel, and Cluster Computing, Computer Science - Networking and Internet Architecture

Access URL: http://arxiv.org/abs/2210.03936

Safety and efficacy of nerinetide in patients with acute ischaemic stroke enrolled in the early window: a post-hoc meta-analysis of individual patient data from three randomised trials

Authors: Aamodt, Anne Hege, Adams, Corey, Adel, Brian A, Advani, Rajiv, Almekhlafi, Mohammed A, Asdaghi, Negar, Bailey, Peter, Bang, Oh Young, Benavente, Oscar, Berrouschot, Jorg, Bharatha, Aditya, Bode, Felix J, Bormann, Albrecht, Buck, Brian H, Budzik, Ronald F, Burns, Paul A, Caen, Marie-Christine, Campbell, Bruce C.V., Camden, Marie-Christine, Casaubon, Leanne K, Chandra, Ronil, Chapot, Rene, Cheskes, Sheldon, Chiu, Albert H.Y., Choe, Hana, Christenson, Jim, Cirillo, Luigi, Couthino, Jonathan M, Coutts, Shelagh B, Cutting, Shawna M, Da Costa, Leodante, Demchuk, Andrew M, Devlin, Michael, Dimitriadis, Konstantin, Dippel, Diedrick W.J, Dorn, Franziska, Dowlatshahi, Dar, Eltoft, Agnethe, English, Joey, Field, Thalia S, Fischer, Sebastian, Frei, Donald F, Fromme, Annette, Gandhi, Dheeraj, Ganesh, Aravind, Garcia-Bermejo, Pablo, Garman, J David, Ghia, Darshan, Goyal, Mayank, Gralla, Jan, Grossberg, Jonathan A, Gubitz, Gordon J, Gupta, Rishi, Guest, William C, Haeusler, Karl G, Hanel, Ricardo A, Harris, Cameron, Harris, Devin, Hassan, Ameer E, Haussen, Diogo, Heard, Kathy J, Heck, Donald, Hellstern, Victoria, Heo, Ji H, Hill, Michael D, Holmin, Staffan, Holtmannspoetter, Markus, Iancu, Daniela, Jansen, Olav, Jadhav, Ashutosh, Jenneson, Sandra, Jin, Albert, Joshi, Manish, Kelly, Michael E, Kleinig, Timothy J, Kohli, Yatika, Lee, Seon Kyu, Leroux, Michelle, Liebig, Thomas, Limbucci, Nicola, Lopez, George A, Lowerison, Mark W, Maegerlin, Christian, Maier, Ilko, Mandzia, Jennifer L, Martin, Coleman O, Mayor-Nunez, Diana, McDonough, Rosalie V, McDougall, Cameron G, McTaggart, Ryan A, Medvedev, George, Mehdiratta, Manu, Menon, Bijoy K, Michalski, Dominik, Minnerup, Jens, Morrison, Laurie J, Moussaddy, Aimen, Mundiyanapurath, Sibu, Murphy, Cynthia, Murphy, Seán, Muto, Mario, Nagel, Simon, Niesen, Wolf-Dirk, Nimjee, Shahid M, Nogueira, Raul G, Ospel, Johanna Maria, Pennington, Sarah, Perez, Yael, Pero, Guglielmo, Puetz, Volker, Pham, Mirko, Phillips, Stephen J, Poli, Sven, Poppe, Alexandre Y, Psychogios, Marios N, Puri, Ajit S, Reimann, Gernot, Rempel, Jeremy L, Remonda, Luca, Rha, Joung-Ho, Rocha, Marcello, Rohr, Axel CR, Roy, Daniel, Ryckborst, Karla J, Sahlas, Demetrios J, Sauvageau, Eric, Schneider, Hauke, Schoon, Bridget A, Selchen, Daniel, Shah, Ruchir A, Shankar, Jai J, Silver, Frank L, Skjelland, Mona, Sohn, Sung-Il, Starkman, Sidney, Stebner, Alexander, Swartz, Richard H, Tallon, John, Tarpley, Jason W, Teitelbaum, Jeanne, Tham, Carol Huilian, Thomalla, Götz, Thornton, John, Tkach, Aleksander, Turkel-Parella, David, Tymianski, Michael, van Adel, Brian A, van Doormaal, Pieter J, van Zwam, Wim, Verbeek, P Richard, Wiesmann, Martin, Witt, Karsten, Yeo, Leonard L.L., Yu, Amy Y X, Zafar, Atif, Zerna, Charlotte, Heard, Kathy ^e

Source: In The Lancet Neurology March 2025 24(3):208-217

Cost-Effectiveness of Implementation Facilitation to Promote Emergency Department-Initiated Buprenorphine for Opioid Use Disorder

Authors: Lu, Thanh ^a, Ryan, Danielle ^b, Cadet, Techna ^{b, c}, Chawarski, Marek C. ^{d, e}, Coupet, Edouard ^d, Edelman, E. Jennifer ^f, Hawk, Kathryn F. ^{d, f}, Huntley, Kristen ^g, Jalali, Ali ^b, O’Connor, Patrick G. ^f, Owens, Patricia H. ^d, Martel, Shara H. ^d, Fiellin, David A. ^{d, f, h}, D’Onofrio, Gail ^{d, f, i}, Murphy, Sean M. ^{b, c, ∗}

Source: In Annals of Emergency Medicine March 2025 85(3):205-213

A randomized controlled trial to assess whether a telehealth-based contingency management intervention reduces alcohol use for individuals with alcohol use disorder

Authors: Jett, Julianne D. ^{a, ⁎}, Tyutyunnyk, Diana ^a, Beck, Rachael ^a, Palmer, Katharine ^a, Ryan, Danielle ^c, Sanchez, Jesus ^b, Weeks, Douglas L. ^a, McPherson, Sterling M. ^a, Chaytor, Naomi ^a, Kiluk, Brian ^d, Javors, Martin A. ^b, Ginsburg, Brett C. ^b, Murphy, Sean ^c, Hill-Kapturczak, Nathalie ^b, McDonell, Michael G. ^a

Source: In Contemporary Clinical Trials March 2025 150

Nonthermal atmospheric pressure plasma (NTAPP) effectively eliminates skin tumors in a mouse model of UV-induced carcinogenesis with a short-term treatment regimen

Authors: Bozsányi, Szabolcs ^{a, b}, Acquah, Ruby ^{a, b}, Rodrigues, Rhea Carmel Glen ^{a, b}, Tracy, Erin C. ^{a, b}, Murphy, Sean P. ^{a, b}, Fridman, Gregory ^c, Huss, Wendy J. ^{a, b}, Friedman, Peter C. ^{d, ⁎}, Paragh, Gyorgy ^{a, b, ⁎}

Source: In Journal of Photochemistry and Photobiology February 2025 25

Rivaroxaban, in combination with low-dose aspirin, is associated with a reduction in proinflammatory and prothrombotic circulating vesicle signatures in patients with cardiovascular disease

Authors: Weiss, Luisa ^{1, 2, 3}, O’Doherty, Aideen ⁴, Uhrig, Wido ¹, Szklanna, Paulina B. ^{1, 2}, Hong-Minh, Molly ^{1, 2}, Wynne, Kieran ⁵, Blanco, Alfonso ⁶, Zivny, Jan ⁷, Lima Passos, Valeria ⁸, Kevane, Barry ^{1, 9, 10}, Murphy, Seán ^{10, 11, 12}, Ní Áinle, Fionnuala ^{1, 9, 10, 13}, O’Donnell, Martin ^{4, ∗}, Maguire, Patricia B. ^{1, 2, 3, ∗}

Source: In Journal of Thrombosis and Haemostasis February 2025 23(2):531-545

Evaluation of foliar fungicides for Cercospora leaf spot management in table beet in New York

Authors: Sharma, Pratibha, Murphy, Sean P., Kikkert, Julie R., Pethybridge, Sarah J.

Source: In Crop Protection February 2025 188

Increases in employment over six months following Khanya: A secondary analysis of a pilot randomized controlled trial of a peer-delivered behavioral intervention for substance use and HIV medication adherence in Cape Town, South Africa

Authors: Belus, Jennifer M., Regenauer, Kristen S., Lu, Thanh, Murphy, Sean M., Rose, Alexandra L., Ochieng, Yvonne Akinyi, Joska, John, Majokweni, Sybil, Andersen, Lena S., Myers, Bronwyn, Safren, Steven A., Magidson, Jessica F.

Source: In International Journal of Drug Policy December 2024 134

Long-term colchicine for the prevention of vascular recurrent events in non-cardioembolic stroke (CONVINCE): a randomised controlled trial

Authors: Kelly, Peter ^*, Lemmens, Robin, Weimar, Christian, Walsh, Cathal, Purroy, Francisco, Barber, Mark, Collins, Ronan, Cronin, Simon, Czlonkowska, Anna, Desfontaines, Philippe, De Pauw, Adinda, Evans, Nicholas Richard, Fischer, Urs, Fonseca, Catarina, Forbes, John, Hill, Michael D, Jatuzis, Dalius, Kõrv, Janika, Kraft, Peter, Kruuse, Christina, Lynch, Catherine, McCabe, Dominick, Mikulik, Robert, Murphy, Sean, Nederkoorn, Paul, O'Donnell, Martin, Sandercock, Peter, Schroeder, Bernadette, Shim, Gek, Tobin, Katrina, Williams, David J, Price, Christopher

Source: In The Lancet 13-19 July 2024 404(10448):125-133

The association between naloxone claims and proportion of independent versus chain pharmacies: A longitudinal analysis of naloxone claims in the United States

Authors: Freibott, Christina E. ^∗, Jalali, Ali, Murphy, Sean M., Walley, Alexander Y., Linas, Benjamin P., Jeng, Philip J., Bratberg, Jeffrey, Marshall, Brandon D.L., Zang, Xiao, Green, Traci C., Morgan, Jake R.

Source: In Journal of the American Pharmacists Association July-August 2024 64(4)

Spatially explicit models reveal rodents rapidly colonize soybean fields regardless of pre-planting chemical treatment timing for cover crop removal

Authors: Nierman, Jena L., Murphy, Sean M., Leuenberger, Wendy, Davis, Allison G., Cox, John J., Springer, Matthew T.

Source: In Crop Protection July 2024 181

A framework to enhance disaster debris estimation with AI and aerial photogrammetry

Authors: Cheng, Chih-Shen, Luo, Linchao, Murphy, Sean, Lee, Yu-Chen, Leite, Fernanda

Source: In International Journal of Disaster Risk Reduction 1 June 2024 107

Economic Evaluations of Establishing Opioid Overdose Prevention Centers in 12 North American Cities: A Systematic Review

Authors: Behrends, Czarina N., Leff, Jared A., Lowry, Weston, Li, Jazmine M., Onuoha, Erica N., Fardone, Erminia, Bayoumi, Ahmed M., McCollister, Kathryn E., Murphy, Sean M., Schackman, Bruce R.

Source: In Value in Health May 2024 27(5):655-669

Isovolumic Contraction Velocity in Heart Failure With Reduced Ejection Fraction and Effect of Sacubitril/Valsartan: the PROVE-HF Study

Authors: OMAR, ALAA MABROUK SALEM, MURPHY, SEAN, FELKER, G. MICHAEL, PIÑA, ILEANA, BUTLER, JAVED, LIU, YUXI, MOHEBI, REZA, BHATIA, KIRTIPAL, WARD, JONATHAN H., WILLIAMSON, KRISTIN M., SOLOMON, SCOTT D., JANUZZI, JAMES L., CONTRERAS, JOHANNA

Source: In Journal of Cardiac Failure May 2024 30(5):653-665

Acod1 expression in cancer cells promotes immune evasion through the generation of inhibitory peptides

Authors: Schofield, James H. ¹, Longo, Joseph ², Sheldon, Ryan D. ³, Albano, Emma ¹, Ellis, Abigail E. ³, Hawk, Mark A. ¹, Murphy, Sean ¹, Duong, Loan ¹, Rahmy, Sharif ¹, Lu, Xin ¹, Jones, Russell G. ², Schafer, Zachary T. ^{1, 4, ∗}

Source: In Cell Reports 23 April 2024 43(4)

Jail-based medication for opioid use disorder and patterns of reincarceration and acute care use after release: A sequence analysis

Authors: Lim, Sungwoo, Cherian, Teena, Katyal, Monica, Goldfeld, Keith S., McDonald, Ryan, Wiewel, Ellen, Khan, Maria, Krawczyk, Noa, Braunstein, Sarah, Murphy, Sean M., Jalali, Ali, Jeng, Philip J., Rosner, Zachary, MacDonald, Ross, Lee, Joshua D.

Source: In Journal of Substance Use and Addiction Treatment March 2024 158

Sex Differences in Coronary Artery Disease Characteristics Among Patients With Type 2 Myocardial Infarction

Authors: Lin, Claire, McCarthy, Cian P., Mohebi, Reza, Liu, Yuxi, Blankstein, Ron, Murphy, Sean P., Miksenas, Hannah, Rogers, Campbell, Amponsah, Daniel K., Rambarat, Paula K., Raghavan, Avanthi, Levin, Allison, Ghoshhajra, Brian, Wasfy, Jason H., Hedgire, Sandeep, Januzzi, James L., Jr.

Source: In JACC: Advances February 2024 3(2)

Molecular detection of pre-ribosomal RNAs of Mycobacterium bovis bacille Calmette-Guérin and Mycobacterium tuberculosis to enhance pre-clinical tuberculosis drug and vaccine development

Authors: Chang, Ming ^{a, b}, Venkatasubramanian, Sambasivan ^c, Barrett, Holly ^d, Urdahl, Kevin B. ^{d, e, f}, Weigel, Kris M. ^g, Cangelosi, Gerard A. ^g, Shah, Javeed A. ^{c, h}, Saha, Aparajita ^c, Feng, Libing ^c, Adams, Kristin N. ⁱ, Sherman, David R. ⁱ, Smith, Nahum ^a, Seshadri, Chetan ^c, Kublin, James G. ^{j, k}, Murphy, Sean C. ^{a, b, i, ⁎}

Source: In Diagnostic Microbiology & Infectious Disease January 2024 108(1)