Tumour infiltrating B cells discriminate checkpoint blockade-induced responses

Authors: Valpione, Sara, Campana, Luca G., Weightman, John, Salih, Zena, Galvani, Elena, Mundra, Piyushkumar A., De Rosa, Francesco, Gupta, Avinash, Serra-Bellver, Patricio, Lorigan, Paul, Germetaki, Theodora, Dynowski, Marek, Kitcatt, Stephen, Sahoo, Sudhakar, Lee, Dave, Dhomen, Nathalie, Lord, Graham, Marais, Richard

Source: In European Journal of Cancer December 2022 177:164-174

Molecular characterization of fast-growing melanomas

Authors: Gaudy-Marqueste, Caroline, Macagno, Nicolas, Loundou, Anderson, Pellegrino, Eric, Ouafik, L'houcine, Budden, Timothy, Mundra, Piyushkumar, Gremel, Gabriela, Akhras, Victoria, Lin, Lijing, Cook, Martin, Kumar, Rajiv, Grob, Jean-Jacques, Nagore, Eduardo, Marais, Richard, Virós, Amaya

Source: In Journal of the American Academy of Dermatology February 2022 86(2):312-321

Integrating epigenetic prior in dynamic Bayesian network for gene regulatory network inference

Authors: Chen, Haifen, Maduranga, D. A. K., Mundra, Piyushkumar A, Zheng, Jie

Source: 2013 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2013 IEEE Symposium on. :76-82 Apr, 2013

Relation: 2013 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

Features for cells and nuclei classification

Authors: Liu, Song, Mundra, Piyushkumar A., Rajapakse, Jagath C.

Source: 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE. :6601-6604 Aug, 2011

Relation: 2011 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

Support vectors based correlation coefficient for gene and sample selection in cancer classification

Authors: Mundra, Piyushkumar A., Rajapakse, Jagath C.

Source: 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2010 IEEE Symposium on. :1-7 May, 2010

Relation: 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

Ensemble learning models that predict surface protein abundance from single-cell multimodal omics data

Authors: Xu, Fan, Wang, Shike, Dai, Xinnan, Mundra, Piyushkumar A., Zheng, Jie

Source: In Methods May 2021 189:65-73

Multiclass Gene Selection Using Pareto-Fronts

Authors: Rajapakse, Jagath C., Mundra, Piyushkumar A.

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics IEEE/ACM Trans. Comput. Biol. and Bioinf. Computational Biology and Bioinformatics, IEEE/ACM Transactions on. 10(1):87-97 Jan, 2013

Brain microenvironment-driven resistance to immune and targeted therapies in acral melanoma

Authors: Lee, Rebecca Jane., Khandelwal, Garima, Baenke, Franziska, Cannistraci, Alessio, Macleod, Kenneth, Mundra, Piyushkumar, Ashton, Garry, Mandal, Amit, Viros, Amaya, Gremel, Gabriela, Galvani, Elena, Smith, Matthew, Carragher, Neil, Dhomen, Nathalie, Miller, Crispin, Lorigan, Paul, Marais, Richard

Source: In ESMO Open 2020 5(4)

Functional classification of DDOST variants of uncertain clinical significance in congenital disorders of glycosylation.

Authors: Kas, Sjors M.¹ (AUTHOR) sjors.kas@cruk.manchester.ac.uk, Mundra, Piyushkumar A.¹ (AUTHOR), Smith, Duncan L.² (AUTHOR), Marais, Richard^1,3 (AUTHOR) richard.marais@oncodrug.co.uk

Source: Scientific Reports. 2/24/2023, Vol. 13 Issue 1, p1-14. 14p.

Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory Network

Authors: Chen, Haifen, Maduranga, D. A. K., Mundra, Piyushkumar A., Zheng, Jie

Source: IEEE/ACM transactions on computational biology and bioinformatics. 17(2):516-525

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100102809111.0x000001&indx=1&recIds=ETOCvdc_100102809111.0x000001

Immune awakening revealed by peripheral T cell dynamics after one cycle of immunotherapy

Authors: Valpione, Sara, Galvani, Elena, Tweedy, Joshua, Mundra, Piyushkumar A., Banyard, Antonia, Middlehurst, Philippa, Barry, Jeff, Mills, Sarah, Salih, Zena, Weightman, John, Gupta, Avinash, Gremel, Gabriela, Baenke, Franziska, Dhomen, Nathalie, Lorigan, Paul C., Marais, Richard

Source: Nature cancer. 1(2):210-221

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164179870.0x000001&indx=1&recIds=ETOCvdc_100164179870.0x000001

Ultraviolet radiation–induced DNA damage is prognostic for outcome in melanoma

Authors: Trucco, Lucas, Mundra, Piyushkumar, Hogan, Kate, Garcia-Martinez, Pablo, Viros, Amaya, Mandal, Amit, Macagno, Nicolas, Gaudy-Marqueste, Caroline, Allan, Donald, Baenke, Franziska, Cook, Martin, McManus, Clare, Sanchez-Laorden, Berta, Dhomen, Nathalie, Marais, Richard

Source: Nature medicine. 25(2):221-224

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100112262600.0x000001&indx=1&recIds=ETOCvdc_100112262600.0x000001

Lipidomic profiling of plasma in a healthy Singaporean population to identify ethnic specific differences in lipid levels and associations with disease risk factors

Authors: Begum, Husna, Torta, Federico, Narayanaswamy, Pradeep, Mundra, Piyushkumar A., Ji, Shanshan, Bendt, Anne K., Saw, Woei-Yuh, Teo, Yik Ying, Soong, Richie, Little, Peter F., Meikle, Peter J., Wenk, Markus R.

Source: In Clinical Mass Spectrometry December 2017 6:25-31

Markers of sympathetic nervous system activity associate with complex plasma lipids in metabolic syndrome subjects

Authors: Nestel, Paul J., Khan, Anmar A., Straznicky, Nora E., Mellett, Natalie A., Jayawardana, Kaushala, Mundra, Piyushkumar A., Lambert, Gavin W., Meikle, Peter J.

Source: In Atherosclerosis January 2017 256:21-28

Weight Loss and Exercise Alter the High-Density Lipoprotein Lipidome and Improve High-Density Lipoprotein Functionality in Metabolic Syndrome

Authors: Khan, Anmar A., Mundra, Piyushkumar A., Straznicky, Nora E., Nestel, Paul J., Wong, Gerard, Tan, Ricardo, Huynh, Kevin, Ng, Theodore W., Mellett, Natalie A., Weir, Jacquelyn M., Barlow, Christopher K., Alshehry, Zahir H., Lambert, Gavin W., Kingwell, Bronwyn A., Meikle, Peter J.

Source: Arteriosclerosis, thrombosis, and vascular biology. 38(2):438-447

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100066176132.0x000001&indx=1&recIds=ETOCvdc_100066176132.0x000001

Effects of the BET-inhibitor, RVX-208 on the HDL lipidome and glucose metabolism in individuals with prediabetes: A randomized controlled trial

Authors: Siebel, Andrew L., Trinh, Si Khiang, Formosa, Melissa F., Mundra, Piyushkumar A., Natoli, Alaina K., Reddy-luthmoodoo, Medini, Huynh, Kevin, Khan, Anmar A., Carey, Andrew L., van Hall, Gerrit, Cobelli, Claudio, Dalla-Man, Chiara, Otvos, Jim D., Rye, Kerry-Anne, Johansson, Jan, Gordon, Allan, Wong, Norman C.W., Sviridov, Dmitri, Barter, Philip, Duffy, Stephen J., Meikle, Peter J., Kingwell, Bronwyn A.

Source: In Metabolism June 2016 65(6):904-914

Gene and sample selection using T-score with sample selection

Authors: Mundra, Piyushkumar A., Rajapakse, Jagath C.

Source: In Journal of Biomedical Informatics February 2016 59:31-41

Increased frequency of CHEK2 germline pathogenic variants among individuals with dermatofibrosarcoma protuberans

Authors: Sargen, Michael R., Kim, Jung, Haley, Jeremy S., Barker, Hayley P., Mundra, Piyushkumar A., Ballinger, Mandy L., Thomas, David M., Carey, David J., Goldstein, Alisa M., Stewart, Douglas R.

Source: In Genetics in Medicine Open 2024 2

Postprandial Plasma Phospholipids in Men Are Influenced by the Source of Dietary Fat1–3

Authors: Meikle, Peter J ^*, Barlow, Christopher K, Mellett, Natalie A, Mundra, Piyushkumar A, Bonham, Maxine P, Larsen, Amy, Cameron-Smith, David, Sinclair, Andrew, Nestel, Paul J, Wong, Gerard

Source: In The Journal of Nutrition September 2015 145(9):2012-2018

Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd

Authors: Gabor, Attila, Tognetti, Marco, Driessen, Alice, Tanevski, Jovan, Guo, Baosen, Cao, Wencai, Shen, He, Yu, Thomas, Chung, Verena, Bodenmiller, Bernd, Saez‐Rodriguez, Julio, Prusokas, Augustinas, Prusokas, Alidivinas, Retkute, Renata, Rajasekar, Anand, Raman, Karthik, Sudhakar, Malvika, Rengaswamy, Raghunathan, Shih, Edward S.C., Kim, Min‐jeong, Cho, Changje, Kim, Dohyang, Oh, Hyeju, Hwang, Jinseub, Jongtae, Kim, Nam, Yeongeun, Yoon, Sanghoo, Kwon, Taeyong, Lee, Kyeongjun, Chaudhary, Sarika, Sharma, Nehal, Bande, Shreya, Cankut Cubuk, Gao Gao fan zhu, Gundogdu, Pelin, Dopazo, Joaquin, Rian, Kinza, Loucera, Carlos, Falco, Matias M, Garrido‐Rodriguez, Martin, Peña‐Chilet, Maria, Chen, Huiyuan, Turu, Gabor, Hunyadi, Laszlo, Misak, Adam, Zhou, Lisheng, Jiang, Xiaoqing, Zhang, Pieta, Rai, Aakansha, Kutum, Rintu, Rana, Sadhna, Srinivasan, Rajgopal, Pradhan, Swatantra, Li, James, Bajic, Vladimir, Van Neste, Christophe, Barradas‐bautista, Didier, Albarade, Somayah Abdullah, Nikolskiy, Igor, Sinkala, Musalula, Tran, Duc, Nguyen, Hung, Nguyen, Tin, Wu, Alexander, DeMeo, Benjamin, Hie, Brian, Singh, Rohit, Liu, Jiwei, Chen, Xueer, Saiz, Leonor, Vilar, Jose M. G, Qiu, Peng, Gosain, Akash, Dhall, Anjali, Bajaj, Dinesh, Kaur, Harpreet, Bagaria, Krishna, Chauhan, Mayank, Sharma, Neelam, Raghava, Gajendra, Patiyal, Sumeet, Hao, Jianye, Peng, Jiajie, Ning, Shangyi, Ma, Yi, Wei, Zhongyu, Aalto, Atte, Goncalves, Jorge, Mombaerts, Laurent, Dai, Xinnan, Zheng, Jie, Mundra, Piyushkumar, Xu, Fan, Wang, Jie, Kant Singh, Krishna, Lee, Mingyu

Source: Molecular systems biology. 17(10)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138993719.0x000001&indx=1&recIds=ETOCvdc_100138993719.0x000001