Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation

Authors: Torre, Denis, Fstkchyan, Yesai S., Ho, Jessica Sook Yuin, Cheon, Youngseo, Patel, Roosheel S., Degrace, Emma J., Mzoughi, Slim, Schwarz, Megan, Mohammed, Kevin, Seo, Ji-Seon, Romero-Bueno, Raquel, Demircioglu, Deniz, Hasson, Dan, Tang, Weijing, Mahajani, Sameehan U., Campisi, Laura, Zheng, Simin, Song, Won-Suk, Wang, Ying-chih, Shah, Hardik, Francoeur, Nancy, Soto, Juan, Salfati, Zelda, Weirauch, Matthew T., Warburton, Peter, Beaumont, Kristin, Smith, Melissa L., Mulder, Lubbertus, Villalta, S. Armando, Kessenbrock, Kai, Jang, Cholsoon, Lee, Daeyoup, De Rubeis, Silvia, Cobos, Inma, Tam, Oliver, Hammell, Molly Gale, Seldin, Marcus, Shi, Yongsheng, Basu, Uttiya, Sebastiano, Vittorio, Byun, Minji, Sebra, Robert, Rosenberg, Brad R., Benner, Chris, Guccione, Ernesto, Marazzi, Ivan

Source: In Molecular Cell 7 December 2023 83(23):4255-4271

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study

Authors: Ozonoff, Al, Schaenman, Joanna, Jayavelu, Naresh Doni, Milliren, Carly E., Calfee, Carolyn S., Cairns, Charles B., Kraft, Monica, Baden, Lindsey R., Shaw, Albert C., Krammer, Florian, van Bakel, Harm, Esserman, Denise A., Liu, Shanshan, Sesma, Ana Fernandez, Simon, Viviana, Hafler, David A., Montgomery, Ruth R., Kleinstein, Steven H., Levy, Ofer, Bime, Chris, Haddad, Elias K., Erle, David J., Pulendran, Bali, Nadeau, Kari C., Davis, Mark M, Hough, Catherine L., Messer, William B., Higuita, Nelson I. Agudelo, Metcalf, Jordan P., Atkinson, Mark A., Brakenridge, Scott C., Corry, David, Kheradmand, Farrah, Ehrlich, Lauren I.R., Melamed, Esther, McComsey, Grace A., Sekaly, Rafick, Diray-Arce, Joann, Peters, Bjoern, Augustine, Alison D., Reed, Elaine F., McEnaney, Kerry, Barton, Brenda, Lentucci, Claudia, Saluvan, Mehmet, Chang, Ana C., Hoch, Annmarie, Albert, Marisa, Shaheen, Tanzia, Kho, Alvin T., Thomas, Sanya, Chen, Jing, Murphy, Maimouna D., Cooney, Mitchell, Presnell, Scott, Fragiadakis, Gabriela K., Patel, Ravi, Guan, Leying, Gygi, Jeremy, Pawar, Shrikant, Brito, Anderson, Khalil, Zain, Maguire, Cole, Fourati, Slim, Overton, James A., Vita, Randi, Westendorf, Kerstin, Salehi-Rad, Ramin, Leligdowicz, Aleksandra, Matthay, Michael A., Singer, Jonathan P., Kangelaris, Kirsten N., Hendrickson, Carolyn M., Krummel, Matthew F., Langelier, Charles R., Woodruff, Prescott G., Powell, Debra L., Kim, James N., Simmons, Brent, Goonewardene, I. Michael, Smith, Cecilia M., Martens, Mark, Mosier, Jarrod, Kimura, Hiroki, Sherman, Amy C., Walsh, Stephen R., Issa, Nicolas C., Dela Cruz, Charles, Farhadian, Shelli, Iwasaki, Akiko, Ko, Albert I., Chinthrajah, Sharon, Ahuja, Neera, Rogers, Angela J., Artandi, Maja, Siegel, Sarah A.R., Lu, Zhengchun, Drevets, Douglas A., Brown, Brent R., Anderson, Matthew L., Guirgis, Faheem W., Thyagarajan, Rama V., Rousseau, Justin F., Wylie, Dennis, Busch, Johanna, Gandhi, Saurin, Triplett, Todd A., Yendewa, George, Giddings, Olivia, Anderson, Evan J., Mehta, Aneesh K., Sevransky, Jonathan E., Khor, Bernard, Rahman, Adeeb, Stadlbauer, Daniel, Dutta, Jayeeta, Xie, Hui, Kim-Schulze, Seunghee, Gonzalez-Reiche, Ana Silvia, van de Guchte, Adriana, Farrugia, Keith, Khan, Zenab, Maecker, Holden T., Elashoff, David, Brook, Jenny, Ramires-Sanchez, Estefania, Llamas, Megan, Rivera, Adreanne, Perdomo, Claudia, Ward, Dawn C., Magyar, Clara E., Fulcher, Jennifer A., Abe-Jones, Yumiko, Asthana, Saurabh, Beagle, Alexander, Bhide, Sharvari, Carrillo, Sidney A., Chak, Suzanna, Ghale, Rajani, Gonzalez, Ana, Jauregui, Alejandra, Jones, Norman, Lea, Tasha, Lee, Deanna, Lota, Raphael, Milush, Jeff, Nguyen, Viet, Pierce, Logan, Prasad, Priya A., Rao, Arjun, Samad, Bushra, Shaw, Cole, Sigman, Austin, Sinha, Pratik, Ward, Alyssa, Willmore, Andrew, Zhan, Jenny, Rashid, Sadeed, Rodriguez, Nicklaus, Tang, Kevin, Altamirano, Luz Torres, Betancourt, Legna, Curiel, Cindy, Sutter, Nicole, Paz, Maria Tercero, Tietje-Ulrich, Gayelan, Leroux, Carolyn, Connors, Jennifer, Bernui, Mariana, Kutzler, Michel A., Edwards, Carolyn, Lee, Edward, Lin, Edward, Croen, Brett, Semenza, Nicholas C., Rogowski, Brandon, Melnyk, Nataliya, Woloszczuk, Kyra, Cusimano, Gina, Bell, Mathew R., Furukawa, Sara, McLin, Renee, Marrero, Pamela, Sheidy, Julie, Tegos, George P., Nagle, Crystal, Mege, Nathan, Ulring, Kristen, Seyfert-Margolis, Vicki, Conway, Michelle, Francisco, Dave, Molzahn, Allyson, Erickson, Heidi, Wilson, Connie Cathleen, Schunk, Ron, Sierra, Bianca, Hughes, Trina, Smolen, Kinga, Desjardins, Michael, van Haren, Simon, Mitre, Xhoi, Cauley, Jessica, Li, Xiaofang, Tong, Alexandra, Evans, Bethany, Montesano, Christina, Licona, Jose Humberto, Krauss, Jonathan, Chang, Jun Bai Park, Izaguirre, Natalie, Chaudhary, Omkar, Coppi, Andreas, Fournier, John, Mohanty, Subhasis, Muenker, M. Catherine, Nelson, Allison, Raddassi, Khadir, Rainone, Michael, Ruff, William E., Salahuddin, Syim, Schulz, Wade L., Vijayakumar, Pavithra, Wang, Haowei, Wunder Jr., Elsio, Young, H. Patrick, Zhao, Yujiao, Saksena, Miti, Altman, Deena, Kojic, Erna, Srivastava, Komal, Eaker, Lily Q., Bermúdez-González, Maria C., Beach, Katherine F., Sominsky, Levy A., Azad, Arman R., Carreño, Juan Manuel, Singh, Gagandeep, Raskin, Ariel, Tcheou, Johnstone, Bielak, Dominika, Kawabata, Hisaaki, Mulder, Lubbertus CF, Kleiner, Giulio, Lee, Alexandra S., Do, Evan Do, Fernandes, Andrea, Manohar, Monali, Hagan, Thomas, Blish, Catherine A., Din, Hena Naz, Roque, Jonasel, Yang, Samuel, Brunton, Amanda, Sullivan, Peter E., Strnad, Matthew, Lyski, Zoe L., Coulter, Felicity J., Booth, J. Leland, Sinko, Lauren A., Moldawer, Lyle L., Borresen, Brittany, Roth-Manning, Brittney, Song, Li-Zhen, Nelson, Ebony, Lewis-Smith, Megan, Smith, Jacob, Tipan, Pablo Guaman, Siles, Nadia, Bazzi, Sam, Geltman, Janelle, Hurley, Kerin, Gabriele, Gio, Sieg, Scott, Vaysman, Tatyana, Bristow, Laurel, Hussaini, Laila, Hellmeister, Kieffer, Samaha, Hady, Cheng, Andrew, Spainhour, Christine, Scherer, Erin M., Johnson, Brandi, Bechnak, Amer, Ciric, Caroline R., Hewitt, Lauren, Carter, Erin, Mcnair, Nina, Panganiban, Bernadine, Huerta, Christopher, Usher, Jacob, Ribeiro, Susan Pereira, Altman, Matthew C., Becker, Patrice M., Rouphael, Nadine, Bime, Christian, Davis, Mark M.

Source: In eBioMedicine September 2022 83

Development of an HIV reporter virus that identifies latently infected CD4+ T cells

Authors: Kim, Eun Hye, Manganaro, Lara, Schotsaert, Michael, Brown, Brian D., Mulder, Lubbertus C.F., Simon, Viviana

Source: In Cell Reports Methods 20 June 2022 2(6)

SARS-CoV-2 mRNA vaccination induces functionally diverse antibodies to NTD, RBD, and S2

Authors: Ahmed, Bulbul, Altman, Deena, Amoako, Angela, Awawda, Mahmoud, Beach, Katherine, Bermúdez-González, Carolina, Chernet, Rachel, Eaker, Lily, Fabre, Shelcie, Ferreri, Emily D., Floda, Daniel, Gleason, Charles, Kleiner, Giulio, Jurczyszak, Denise, Matthews, Julia, Mendez, Wanni, Mulder, Lubbertus C.F., Polanco, Jose, Russo, Kayla, Salimbangon, Ashley, Saksena, Miti, Shin, Amber S., Sominsky, Levy, Suthakaran, Sayahi, Wajnberg, Ania, Amanat, Fatima, Thapa, Mahima, Lei, Tinting, Ahmed, Shaza M. Sayed, Adelsberg, Daniel C., Carreño, Juan Manuel, Strohmeier, Shirin, Schmitz, Aaron J., Zafar, Sarah, Zhou, Julian Q., Rijnink, Willemijn, Alshammary, Hala, Borcherding, Nicholas, Reiche, Ana Gonzalez, Srivastava, Komal, Sordillo, Emilia Mia, van Bakel, Harm, Turner, Jackson S., Bajic, Goran, Simon, Viviana, Ellebedy, Ali H., Krammer, Florian

Source: In Cell 22 July 2021 184(15):3936-3948

An integrated approach for the accurate detection of HERV-K HML-2 transcription and protein synthesis.

Authors: Gleason, Charles, Terry, Sandra N, Hernandez, Matthew M, Jacob, Samson, Fenyo, David, Johnson, Jeffrey R, Deikus, Gintaras, Francoeur, Nancy, Hahn, Aana, Sebra, Robert, Zamarin, Dmitriy, Molina, Henrik, Simon, Viviana, Mulder, Lubbertus C F

Source: Nucleic Acids Research; 1/27/2025, Vol. 53 Issue 2, p1-13, 13p

IL-15 regulates susceptibility of CD4⁺ T cells to HIV infection

Authors: Manganaro, Lara, Hong, Patrick, Hernandez, Matthew M., Argyle, Dionne, Mulder, Lubbertus C. F., Potla, Uma, Diaz-Griffero, Felipe, Lee, Benhur, Fernandez-Sesma, Ana, Simon, Viviana

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Oct 01. 115(41), E9659-E9667.

Access URL: https://www.jstor.org/stable/26532229

Expression of HERV-K108 envelope interferes with HIV-1 production

Authors: Terry, Sandra N., Manganaro, Lara, Cuesta-Dominguez, Alvaro, Brinzevich, Daria, Simon, Viviana, Mulder, Lubbertus C.F.

Source: In Virology September 2017 509:52-59

Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection

Authors: Heaton, Nicholas S., Moshkina, Natasha, Fenouil, Romain, Gardner, Thomas J., Aguirre, Sebastian, Shah, Priya S., Zhao, Nan, Manganaro, Lara, Hultquist, Judd F., Noel, Justine, Sachs, David, Hamilton, Jennifer, Leon, Paul E., Chawdury, Amit, Tripathi, Shashank, Melegari, Camilla, Campisi, Laura, Hai, Rong, Metreveli, Giorgi, Gamarnik, Andrea V., García-Sastre, Adolfo, Greenbaum, Benjamin, Simon, Viviana, Fernandez-Sesma, Ana, Krogan, Nevan J., Mulder, Lubbertus C.F., van Bakel, Harm, Tortorella, Domenico, Taunton, Jack, Palese, Peter, Marazzi, Ivan

Source: In Immunity 19 January 2016 44(1):46-58

Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding

Authors: Tripathi, Shashank, Pohl, Marie O., Zhou, Yingyao, Rodriguez-Frandsen, Ariel, Wang, Guojun, Stein, David A., Moulton, Hong M., DeJesus, Paul, Che, Jianwei, Mulder, Lubbertus C.F., Yángüez, Emilio, Andenmatten, Dario, Pache, Lars, Manicassamy, Balaji, Albrecht, Randy A., Gonzalez, Maria G., Nguyen, Quy, Brass, Abraham, Elledge, Stephen, White, Michael, Shapira, Sagi, Hacohen, Nir, Karlas, Alexander, Meyer, Thomas F., Shales, Michael, Gatorano, Andre, Johnson, Jeffrey R., Jang, Gwen, Johnson, Tasha, Verschueren, Erik, Sanders, Doug, Krogan, Nevan, Shaw, Megan, König, Renate, Stertz, Silke, García-Sastre, Adolfo, Chanda, Sumit K.

Source: In Cell Host & Microbe 9 December 2015 18(6):723-735

ISG15 deficiency restricts HIV-1 infection.

Authors: Jurczyszak, Denise^1,2,3,4,5,6, Manganaro, Lara⁷, Buta, Sofija^1,2,3,4,5,6, Gruber, Conor^1,2,3,4,5,6, Martin-Fernandez, Marta^1,2,3,4,5,6, Taft, Justin^1,2,3,4,5, Patel, Roosheel^1,2,3,4,5,6, Cipolla, Melissa^1,2,3,4,5,6, Alshammary, Hala¹, Mulder, Lubbertus C. F.^1,8, Sachidanandam, Ravi⁶, Bogunovic, Dusan^1,2,3,4,5,6, dusan.bogunovic@mssm.edu, Simon, Viviana^1,8,9,10, dusan.bogunovic@mssm.edu

Source: PLoS Pathogens; 3/25/2022, Vol. 18 Issue 3, p1-17, 17p

Cytidine Deamination Induced HIV-1 Drug Resistance

Authors: Mulder, Lubbertus C. F., Harari, Ariana, Simon, Viviana

Source: Proceedings of the National Academy of Sciences of the United States of America, 2008 Apr 01. 105(14), 5501-5506.

Access URL: https://www.jstor.org/stable/25461633

Highly variable SARS-CoV-2 spike antibody responses to two doses of COVID-19 RNA vaccination in patients with multiple myeloma

Authors: Banu, Radhika, Bermúdez-González, Maria C., Chernet, Rachel L., Ferreri, Emily D., Floda, Daniel L., Firpo-Betancourt, Adolfo, Kleiner, Giulio, Russo, Kayla T., Salimbangon, Ashley-Beathrese T., Saksena, Miti S., Shin, Amber A., Matthews, Julia, Mendez, Wanni, Sominsky, Levy, Mulder, Lubbertus C.F., Mendu, Rao, Van Oekelen, Oliver, Gleason, Charles R., Agte, Sarita, Srivastava, Komal, Beach, Katherine F., Aleman, Adolfo, Kappes, Katerina, Mouhieddine, Tarek H., Wang, Bo, Chari, Ajai, Cordon-Cardo, Carlos, Krammer, Florian, Jagannath, Sundar, Simon, Viviana, Wajnberg, Ania, Parekh, Samir

Source: In Cancer Cell 9 August 2021 39(8):1028-1030

Characterization of HIV-1 integrase N-terminal mutant viruses

Authors: Lloyd, Aliza G., Ng, Yen Shing, Muesing, Mark A., Simon, Viviana, Mulder, Lubbertus C.F.

Source: In Virology 30 March 2007 360(1):129-135

Cis-alkoxy-substituted spirocyclic 1H-pyrrolidine-2,4-dione derivatives serving as pesticides

4-alkoxy-cyclohexane-1-amino-carboxylic esters and processes for their preparation

Nicotinamide derivatives as synthesis units for producing agrochemical substances, and method for the production thereof

CIS-ALKOXY-SUBSTITUTED SPIROCYCLIC 1H-PYRROLIDINE-2,4-DIONE DERIVATIVES SERVING AS PESTICIDES

Cis-alkoxy-substituted spirocyclic 1H-pyrrolidine-2,4-dione derivatives serving as pesticides

Method for producing difluoro-acetyl-acetic acid alkylesters

4-ALKOXY-CYCLOHEXANE-1-AMINO-CARBOXYLIC ESTERS AND PROCESSES FOR THEIR PREPARATION