Fast computation of approximate weak common intervals in multiple indeterminate strings

Authors: Doerr, Daniel, Moret, Bernard M. E.

Subject Terms: Computer Science - Data Structures and Algorithms

Access URL: http://arxiv.org/abs/2304.02657

Phylogenetic Analysis of Cell Types using Histone Modifications

Authors: Nair, Nishanth Ulhas, Lin, Yu, Bucher, Philipp, Moret, Bernard M. E.

Subject Terms: Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1307.7919

Distance-Based Genome Rearrangement Phylogeny.

Authors: Wang, Li-San, Warnow, Tandy, Moret, Bernard M. E.

Source: Journal of Molecular Evolution; October 2006, Vol. 63 Issue 4, p473-483, 11p

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Toward New Software for Computational Phylogenetics.

Authors: Moret, Bernard, M. E., Wang, Li-SAn, Warnow, Tandy

Source: Computer; Jul2002, Vol. 35 Issue 5, p55-64, 10p

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Inferring transcript phylogenies.

Authors: Christinat, Yann¹ yann.christinat@epfl.ch, Moret, Bernard M. E.¹

Source: BMC Bioinformatics. 2012, Vol. 13 Issue Suppl 9, p1-14. 14p. 13 Diagrams, 1 Chart, 3 Graphs.

Subject Terms: *RNA splicing, *HUMAN genes, *EXONS (Genetics), *SPLIT genes, *BIOINFORMATICS, *INTRONS

FluReF, an automated flu virus reassortment finder based on phylogenetic trees.

Authors: Yurovsky, Alisa¹ alisa.yurovsky@gmail.com, Moret, Bernard M. E.¹

Source: BMC Genomics. 2011 Supplement 2, Vol. 12 Issue Suppl 2, p1-7. 7p. 4 Diagrams.

Subject Terms: *GENOMES, *INFLUENZA, *PANDEMICS, *PHYLOGENY, *BIOINFORMATICS

Refining transcriptional regulatory networks using network evolutionary models and gene histories.

Authors: Xiuwei Zhang¹, Moret, Bernard M. E.¹ bernard.moret@epfl.ch

Source: Algorithms for Molecular Biology. 2010, Vol. 5, p1-12. 12p. 1 Chart, 5 Graphs.

Subject Terms: *MOLECULAR biology, *INFERENCE (Logic), *ORGANISMS, *PHYLOGENY, *ALGORITHMS, *DROSOPHILA

Inversion-based genomic signatures.

Authors: Swenson, Krister M.¹ krister.swenson@epfl.ch, Moret, Bernard M. E.¹ bernard.moret@epfl.ch

Source: BMC Bioinformatics. 2009 Supplement 1, Vol. 10, Special section p1-9. 9p. 3 Diagrams, 8 Charts, 1 Graph.

Subject Terms: *GENOMES, *GENES, *BIOLOGICAL evolution, *NUCLEOTIDE sequence, *DATABASES

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