Accelerating SARS-CoV-2 genomic surveillance in a routine clinical setting with nanopore sequencing

Authors: Buenestado-Serrano, Sergio, Herranz, Marta, Otero-Sobrino, Álvaro, Molero-Salinas, Andrea, Rodríguez-Grande, Cristina, Sanz-Pérez, Amadeo, Durán Galván, María José, Catalán, Pilar, Alonso, Roberto, Muñoz, Patricia, Pérez-Lago, Laura, García de Viedma, Darío

Source: In International Journal of Medical Microbiology March 2024 314

Chronic Systemic SARS-CoV-2 Infection Without Respiratory Involvement in an Immunocompromised Patient.

Authors: Tejerina, Francisco, Peñas-Utrilla, Daniel, Herranz, Marta, Catalán, Pilar, Marín, Mercedes, Mesones, Lara, García-Domínguez, José Manuel, Merino, Beatriz, Pérez, Leire, Fanciulli, Chiara, Muñoz, Patricia, Rodríguez-Gonzalez, Carmen, Diez, Cristina, Aldámiz, Teresa, Molero-Salinas, Andrea, Pérez-Lago, Laura, García de Viedma, Darío

Source: Viruses (1999-4915); Feb2025, Vol. 17 Issue 2, p147, 8p

Subject Terms: WHOLE genome sequencing, SINGLE nucleotide polymorphisms, IMMUNOCOMPROMISED patients, SARS-CoV-2, RESPIRATORY infections

Genomically-supported Redefinition of an Outbreak in a Pediatric Unit Caused by bla VIM -harboring Klebsiella michiganensis.

Authors: López-Camacho, Elena, Aguilera-Alonso, David, Buenestado-Serrano, Sergio, Marín, Mercedes, Molero-Salinas, Andrea, López Fresneña, Nieves, Cercenado, Emilia, Vicente, Teresa, Herrera, Laura, Slocker-Barrio, María, Muñoz, Patricia, Saavedra Lozano, Jesús, Navarro Gómez, María Luisa, García de Viedma, Darío, Pérez-Lago, Laura

Source: Pediatric Infectious Disease Journal; Feb2025, Vol. 44 Issue 2, p166-173, 8p

Early SARS-CoV-2 Reinfections Involving the Same or Different Genomic Lineages, Spain.

Authors: Rodríguez-Grande, Cristina^1,2, Estévez, Agustín^1,2, Palomino-Cabrera, Rosalía^1,2, Molero-Salinas, Andrea^1,2, Peñas-Utrilla, Daniel^1,2, Herranz, Marta¹, Sanz-Pérez, Amadeo^1,2, Alcalá, Luis, Veintimilla, Cristina, Catalán, Pilar, Martínez-Laperche, Carolina, Alonso, Roberto^3,4, Muñoz, Patricia³, Pérez-Lago, Laura^1,2, lperezg00@gmail.com, de Viedma, Darío García^1,2,4, dgviedma2@gmail.com

Source: Emerging Infectious Diseases; Jun2023, Vol. 29 Issue 6, p1154-1161, 8p, 1 Diagram, 3 Charts

A solution to achieve sequencing from SARS-CoV-2 specimens with low viral loads: concatenation of reads from independent reactions.

Authors: Cerro-Monje, Alba, Buenestado-Serrano, Sergio, Palomino-Cabrera, Rosalía, Molero-Salinas, Andrea, Herranz, Marta, Alonso, Roberto, Catalán, Pilar, Muñoz, Patricia, García de Viedma, Darío, Pérez-Lago, Laura

Source: Virology Journal; 5/30/2024, Vol. 21, p1-8, 8p

Subject Terms: VIRAL load, NUCLEOTIDE sequencing, WHOLE genome sequencing, SARS-CoV-2, COVID-19

Microevolution, reinfection and highly complex genomic diversity in patients with sequential isolates of Mycobacterium abscessus.

Authors: Buenestado-Serrano, Sergio, Martínez-Lirola, Miguel, Herranz-Martín, Marta, Esteban, Jaime, Broncano-Lavado, Antonio, Molero-Salinas, Andrea, Sanz-Pérez, Amadeo, Blázquez, Jesús, Ruedas-López, Alba, Toro, Carlos, López-Roa, Paula, Domingo, Diego, Zamarrón, Ester, Ruiz Serrano, María Jesús, Muñoz, Patricia, Pérez-Lago, Laura, García de Viedma, Darío

Source: Nature Communications; 3/28/2024, Vol. 15 Issue 1, p1-11, 11p

Subject Terms: MYCOBACTERIUM, GENOMICS, MICROEVOLUTION, REINFECTION, MYCOBACTERIA, SEQUENTIAL analysis

High SARS-CoV-2 viral load in travellers arriving in Spain with a negative COVID-19 test prior to departure

Authors: Molero-Salinas, Andrea, Rico-Luna, Carla, Losada, Carmen, Buenestado-Serrano, Sergio, de la Cueva García, Víctor Manuel, Egido, José, Adán-Jiménez, Javier, Catalán, Pilar, Muñoz, Patricia, Pérez-Lago, Laura, García de Viedma, Darío

Source: Journal of travel medicine. 29(3)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100152530891.0x000001&indx=1&recIds=ETOCvdc_100152530891.0x000001

Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involved.

Authors: Peñas-Utrilla, Daniel, Pérez-Lago, Laura, Molero-Salinas, Andrea, Estévez, Agustín, Sanz, Amadeo, Herranz, Marta, Martínez-Laperche, Carolina, Andrés-Zayas, Cristina, Veintimilla, Cristina, Catalán, Pilar, Alonso, Roberto, Muñoz, Patricia, García de Viedma, Darío, on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group, Alcalá, Luis, Aldámiz, Teresa, Álvarez-Uría, Ana, Bermúdez, Elena, Bouza, Emilio, Buenestado-Serrano, Sergio

Source: Genome Medicine; 7/24/2023, Vol. 15 Issue 1, p1-16, 16p

Subject Terms: MIXED infections, GENOMICS, SARS-CoV-2, PANDEMICS, SARS-CoV-2 Omicron variant

No emergence of resistance mutations in COVID‐19 patients receiving nirmatrelvir/ritonavir.

Authors: Palomino‐Cabrera, Rosalía, Tejerina, Francisco, Molero‐Salinas, Andrea, Veintimilla, Cristina, Catalán, Pilar, Ferris, María, Osorio, Santiago, Alonso, Roberto, Muñoz, Patricia, de García de Viedma, Darío, Pérez‐Lago, Laura

Source: Journal of Medical Virology; Jan2024, Vol. 96 Issue 1, p1-3, 3p

Subject Terms: COVID-19, SARS-CoV-2

High SARS-CoV-2 viral load in travellers arriving in Spain with a negative COVID-19 test prior to departure.

Authors: Molero-Salinas, Andrea^1,2 (AUTHOR), Rico-Luna, Carla^1,2 (AUTHOR), Losada, Carmen^1,2 (AUTHOR), Buenestado-Serrano, Sergio^1,2 (AUTHOR), García, Víctor Manuel de la Cueva^1,2 (AUTHOR), Egido, José^1,2 (AUTHOR), Adán-Jiménez, Javier^1,2 (AUTHOR), Catalán, Pilar^1,2,3 (AUTHOR), Muñoz, Patricia^1,2,3,4 (AUTHOR), Pérez-Lago, Laura^1,2 (AUTHOR), Viedma, Darío García de^1,2,3 (AUTHOR) dgviedma2@gmail.com

Source: Journal of Travel Medicine. Apr2022, Vol. 29 Issue 3, p1-4. 4p.

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