Three enzymes governed the rise of O2 on Earth

Authors: Mrnjavac, Natalia, Degli Esposti, Mauro, Mizrahi, Itzhak, Martin, William F., Allen, John F.

Source: In BBA - Bioenergetics 1 November 2024 1865(4)

The underappreciated diversity of bile acid modifications

Authors: Mohanty, Ipsita, Mannochio-Russo, Helena, Schweer, Joshua V., El Abiead, Yasin, Bittremieux, Wout, Xing, Shipei, Schmid, Robin, Zuffa, Simone, Vasquez, Felipe, Muti, Valentina B., Zemlin, Jasmine, Tovar-Herrera, Omar E., Moraïs, Sarah, Desai, Dhimant, Amin, Shantu, Koo, Imhoi, Turck, Christoph W., Mizrahi, Itzhak, Kris-Etherton, Penny M., Petersen, Kristina S., Fleming, Jennifer A., Huan, Tao, Patterson, Andrew D., Siegel, Dionicio, Hagey, Lee R., Wang, Mingxun, Aron, Allegra T., Dorrestein, Pieter C.

Source: In Cell 28 March 2024 187(7):1801-1818

Carbohydrate Depolymerization by Intricate Cellulosomal Systems

Authors: Moraïs, Sarah, Stern, Johanna, Artzi, Lior, Fontes, Carlos M. G. A., Bayer, Edward A., Mizrahi, Itzhak

Source: Methods in molecular biology. 2657:53-78

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632661227&indx=1&recIds=ETOCRN632661227

Affinity-induced covalent protein-protein ligation via the SpyCatcher-SpyTag interaction

Authors: Fierer, Jacob O., Tovar-Herrera, Omar E., Weinstein, Jonathan Y., Kahn, Amaranta, Moraïs, Sarah, Mizrahi, Itzhak, Bayer, Edward A.

Source: In Green Carbon September 2023 1(1):33-42

Regional processes shape the structure of rumen microbial co‐occurrence networks.

Authors: Galai, Geut, Arbel, Dafna, Klass, Keren, Grinshpan, Ido, Mizrahi, Itzhak, Pilosof, Shai

Source: Ecography; Dec2024, Vol. 2024 Issue 12, p1-13, 13p

Subject Terms: MICROBIAL communities, SIGNAL processing, STOCHASTIC models, FARMS, COWS

Unique Fn3‐like biosensor in σ^I/anti‐σ^I factors for regulatory expression of major cellulosomal scaffoldins in Pseudobacteroides cellulosolvens.

Authors: Dong, Sheng, Chen, Chao, Li, Jie, Liu, Ya‐Jun, Bayer, Edward A., Lamed, Raphael, Mizrahi, Itzhak, Cui, Qiu, Feng, Yingang

Source: Protein Science: A Publication of the Protein Society; Nov2024, Vol. 33 Issue 11, p1-17, 17p

The Road Not Taken: The Rumen Microbiome, Functional Groups, and Community States

Authors: Moraïs, Sarah, Mizrahi, Itzhak

Source: In Trends in Microbiology June 2019 27(6):538-549

Short- and long-term low-salinity acclimation effects on the branchial and intestinal gene expression in the European seabass (Dicentrarchus labrax)

Authors: Kokou, Fotini, Con, Pazit, Barki, Assaf, Nitzan, Tali, Slosman, Tatiana, Mizrahi, Itzhak, Cnaani, Avner

Source: In Comparative Biochemistry and Physiology, Part A May 2019 231:11-18

Rapid adaptation for fibre degradation by changes in plasmid stoichiometry within Lactobacillus plantarum at the synthetic community level

Authors: Ben‐David, Yonit, Moraïs, Sarah, Bayer, Edward A., Mizrahi, Itzhak

Source: Microbial biotechnology. 13(6):1748-1764

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100111897530.0x000001&indx=1&recIds=ETOCvdc_100111897530.0x000001

Unravelling plasmidome distribution and interaction with its hosting microbiome

Authors: Brown Kav, Aya, Rozov, Roye, Bogumil, David, Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, Itai, Halperin, Eran, Shamir, Ron, Mizrahi, Itzhak

Source: Environmental microbiology. 22(1):32-44

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100099793654.0x000001&indx=1&recIds=ETOCvdc_100099793654.0x000001

The radical impact of oxygen on prokaryotic evolution—enzyme inhibition first, uninhibited essential biosyntheses second, aerobic respiration third.

Authors: Mrnjavac, Natalia, Nagies, Falk S. P., Wimmer, Jessica L. E., Kapust, Nils, Knopp, Michael R., Trost, Katharina, Modjewski, Luca, Bremer, Nico, Mentel, Marek, Esposti, Mauro Degli, Mizrahi, Itzhak, Allen, John F., Martin, William F.

Source: FEBS Letters; Jul2024, Vol. 598 Issue 14, p1692-1714, 23p

Subject Terms: GREAT Oxidation Event, HORIZONTAL gene transfer, AEROBIC metabolism, PHYSIOLOGICAL adaptation, REACTIVE oxygen species

Core gut microbial communities are maintained by beneficial interactions and strain variability in fish

Authors: Kokou, Fotini, Sasson, Goor, Friedman, Jonathan, Eyal, Stav, Ovadia, Ofer, Harpaz, Sheenan, Cnaani, Avner, Mizrahi, Itzhak

Source: Nature microbiology. 4(12):2456-2465

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100130017984.0x000001&indx=1&recIds=ETOCvdc_100130017984.0x000001

FEAST: fast expectation-maximization for microbial source tracking

Authors: Shenhav, Liat, Thompson, Mike, Joseph, Tyler, Briscoe, Leah, Furman, Ori, Bogumil, David, Mizrahi, Itzhak, Pe'er, Itsik, Halperin, Eran

Source: Nature methods. 16(7):627-632

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182780755.0x000001&indx=1&recIds=ETOCvdc_100182780755.0x000001

Man-made microbial resistances in built environments

Authors: Mahnert, Alexander, Moissl-Eichinger, Christine, Zojer, Markus, Bogumil, David, Mizrahi, Itzhak, Rattei, Thomas, Martinez, José, Berg, Gabriele

Source: Nature communications. 10(1):1-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125109277.0x000001&indx=1&recIds=ETOCvdc_100125109277.0x000001

Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance

Authors: Wein, Tanita, Hülter, Nils, Mizrahi, Itzhak, Dagan, Tal

Source: Nature communications. 10(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100179724831.0x000001&indx=1&recIds=ETOCvdc_100179724831.0x000001

Phylogenomics and genetic analysis of solvent-producing Clostridium species.

Authors: Jensen, Rasmus O., Schulz, Frederik, Roux, Simon, Klingeman, Dawn M., Mitchell, Wayne P., Udwary, Daniel, Moraïs, Sarah, Reynoso, Vinicio, Winkler, James, Nagaraju, Shilpa, De Tissera, Sashini, Shapiro, Nicole, Ivanova, Natalia, Reddy, T. B. K., Mizrahi, Itzhak, Utturkar, Sagar M., Bayer, Edward A., Woyke, Tanja, Mouncey, Nigel J., Jewett, Michael C.

Source: Scientific Data; 5/1/2024, Vol. 11 Issue 1, p1-20, 20p

Subject Terms: CLOSTRIDIUM acetobutylicum, CLOSTRIDIUM, ISOBUTANOL, SPECIES, METABOLITES, QUORUM sensing, CELLULOSOMES

People: JONES, David, 1895-1974

Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases.

Authors: Zorea, Alvah, Pellow, David, Levin, Liron, Pilosof, Shai, Friedman, Jonathan, Shamir, Ron, Mizrahi, Itzhak

Source: Nature Communications; 4/11/2024, Vol. 15 Issue 1, p1-13, 13p

A cellulosomal double‐dockerin module from Clostridium thermocellum shows distinct structural and cohesin‐binding features.

Authors: Chen, Chao, Yang, Hongwu, Dong, Sheng, You, Cai, Moraïs, Sarah, Bayer, Edward A., Liu, Ya‐Jun, Xuan, Jinsong, Cui, Qiu, Mizrahi, Itzhak, Feng, Yingang

Source: Protein Science: A Publication of the Protein Society; Apr2024, Vol. 33 Issue 4, p1-15, 15p

Microbiome niche modification drives diurnal rumen community assembly, overpowering individual variability and diet effects

Authors: Shaani, Yoav, Zehavi, Tamar, Eyal, Stav, Miron, Joshuah, Mizrahi, Itzhak

Source: ISME journal. 12(10):2446-2457

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100181197261.0x000001&indx=1&recIds=ETOCvdc_100181197261.0x000001

A method to the madness

Authors: Mizrahi, Itzhak, Jami, Elie

Source: EMBO reports. 22(2)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100114263359.0x000001&indx=1&recIds=ETOCvdc_100114263359.0x000001