Predicting the involvement of polyQ- and polyA in protein-protein interactions by their amino acid context

Authors: Mier, Pablo ^⁎, Andrade-Navarro, Miguel A.

Source: In Heliyon 30 September 2024 10(18)

Molecular causality in the advent of foundation models.

Authors: Lobentanzer, Sebastian¹ (AUTHOR) sebastian.lobentanzer@gmail.com, Rodriguez-Mier, Pablo¹ (AUTHOR), Bauer, Stefan² (AUTHOR), Saez-Rodriguez, Julio¹ (AUTHOR) pub.saez@uni-heidelberg.de

Source: Molecular Systems Biology. Aug2024, Vol. 20 Issue 8, p848-858. 11p.

COVID-19: Estimating spread in Spain solving an inverse problem with a probabilistic model

Authors: Matabuena, Marcos, Meijide-García, Carlos, Rodríguez-Mier, Pablo, Leborán, Víctor

Subject Terms: Quantitative Biology - Populations and Evolution, Quantitative Biology - Quantitative Methods, Statistics - Applications

Access URL: http://arxiv.org/abs/2004.13695

Scalable modeling of thermal dynamics in buildings using fuzzy rules for regression

Authors: Rodriguez-Mier, Pablo, Mucientes, Manuel, Bugarin, Alberto

Source: 2017 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) Fuzzy Systems (FUZZ-IEEE), 2017 IEEE International Conference on. :1-6 Jul, 2017

Relation: 2017 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE)

A STRP-ed definition of Structured Tandem Repeats in Proteins

Authors: Monzon, Alexander Miguel, Arrías, Paula Nazarena, Elofsson, Arne, Mier, Pablo, Andrade-Navarro, Miguel A., Bevilacqua, Martina, Clementel, Damiano, Bateman, Alex, Hirsh, Layla, Fornasari, Maria Silvina, Parisi, Gustavo, Piovesan, Damiano, Kajava, Andrey V., Tosatto, Silvio C.E.

Source: In Journal of Structural Biology December 2023 215(4)

Structure–function relationships in protein homorepeats

Authors: Elena-Real, Carlos A., Mier, Pablo, Sibille, Nathalie, Andrade-Navarro, Miguel A., Bernadó, Pau

Source: In Current Opinion in Structural Biology December 2023 83

Protein repeats evolve and emerge in giant viruses

Authors: Erdozain, Sofía, Barrionuevo, Emilia, Ripoll, Lucas, Mier, Pablo, Andrade-Navarro, Miguel A.

Source: In Journal of Structural Biology June 2023 215(2)

A Hybrid Local-Global Optimization Strategy for QoS-Aware Service Composition

Authors: Rodriguez-Mier, Pablo, Mucientes, Manuel, Lama, Manuel

Source: 2015 IEEE International Conference on Web Services Web Services (ICWS), 2015 IEEE International Conference on. :735-738 Jun, 2015

Relation: 2015 IEEE International Conference on Web Services (ICWS)

Regions with two amino acids in protein sequences: A step forward from homorepeats into the low complexity landscape

Authors: Mier, Pablo, Andrade-Navarro, Miguel A.

Source: Computational and Structural Biotechnology Journal. 20:5516-5523

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190062809.0x000001&indx=1&recIds=ETOCvdc_100190062809.0x000001

Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics

Authors: Wieder, Cecilia, Bundy, Jacob G., Frainay, Clément, Poupin, Nathalie, Rodríguez-Mier, Pablo, Vinson, Florence, Cooke, Juliette, Lai, Rachel P. J., Jourdan, Fabien, Ebbels, Timothy M. D.

Source: Environmental science & technology. 56(20):14219-14222

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN630487102&indx=1&recIds=ETOCRN630487102

The sequence context in poly-alanine regions: structure, function and conservation

Authors: Mier, Pablo, Elena-Real, Carlos A, Cortés, Juan, Bernadó, Pau, Andrade-Navarro, Miguel A

Source: Bioinformatics. 38(21):4851-4858

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100163716107.0x000001&indx=1&recIds=ETOCvdc_100163716107.0x000001

Automatic Web Service Composition with a Heuristic-Based Search Algorithm

Authors: Rodriguez-Mier, Pablo, Mucientes, Manuel, Lama, Manuel

Source: 2011 IEEE International Conference on Web Services Web Services (ICWS), 2011 IEEE International Conference on. :81-88 Jul, 2011

Relation: 2011 IEEE International Conference on Web Services (ICWS)

COVID-19: Estimation of the transmission dynamics in Spain using a stochastic simulator and black-box optimization techniques

Authors: Matabuena, Marcos, Rodríguez-Mier, Pablo, García-Meixide, Carlos, Leborán, Victor

Source: In Computer Methods and Programs in Biomedicine November 2021 211

Hybrid Optimization Algorithm for Large-Scale QoS-Aware Service Composition

Authors: Rodriguez-Mier, Pablo, Mucientes, Manuel, Lama, Manuel

Subject Terms: Computer Science - Artificial Intelligence, Computer Science - Networking and Internet Architecture

Access URL: http://arxiv.org/abs/1509.06254

Evolutionary Study of Protein Short Tandem Repeats in Protein Families.

Authors: Mier, Pablo¹ (AUTHOR) andrade@uni-mainz.de, Andrade-Navarro, Miguel A.¹ (AUTHOR)

Source: Biomolecules (2218-273X). Jul2023, Vol. 13 Issue 7, p1116. 9p.

Subject Terms: *MICROSATELLITE repeats, *AMINO acid sequence, *PROTEINS, *PROTEIN analysis

A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication

Authors: Paladin, Lisanna, Necci, Marco, Piovesan, Damiano, Mier, Pablo, Andrade-Navarro, Miguel A., Tosatto, Silvio C.E.

Source: In Journal of Structural Biology 1 November 2020 212(2)

Flanking Regions Determine the Structure of the Poly-Glutamine in Huntingtin through Mechanisms Common among Glutamine-Rich Human Proteins

Authors: Urbanek, Annika, Popovic, Matija, Morató, Anna, Estaña, Alejandro, Elena-Real, Carlos A., Mier, Pablo, Fournet, Aurélie, Allemand, Frédéric, Delbecq, Stephane, Andrade-Navarro, Miguel A., Cortés, Juan, Sibille, Nathalie, Bernadó, Pau

Source: In Structure 7 July 2020 28(7):733-746

An Integrated Semantic Web Service Discovery and Composition Framework

Authors: Rodriguez-Mier, Pablo, Pedrinaci, Carlos, Lama, Manuel, Mucientes, Manuel

Subject Terms: Computer Science - Artificial Intelligence, Computer Science - Software Engineering

Access URL: http://arxiv.org/abs/1502.02840

The importance of definitions in the study of polyQ regions: A tale of thresholds, impurities and sequence context

Authors: Mier, Pablo, Elena-Real, Carlos, Urbanek, Annika, Bernadó, Pau, Andrade-Navarro, Miguel A.

Source: In Computational and Structural Biotechnology Journal 2020 18:306-313

Repeatability in protein sequences

Authors: Kamel, Mohamed, Mier, Pablo, Tari, Abdelkamel, Andrade-Navarro, Miguel A.

Source: In Journal of Structural Biology 1 November 2019 208(2):86-91