Genome‐Enabled Parameterization Enhances Model Simulation of CH4 Cycling in Four Natural Wetlands.

Authors: Zuo, Yunjiang¹ (AUTHOR), He, Liyuan² (AUTHOR), Wang, Yihui² (AUTHOR), Liu, Jianzhao¹ (AUTHOR), Wang, Nannan¹ (AUTHOR), Li, Kexin^1,3 (AUTHOR), Guo, Ziyu¹ (AUTHOR), Zhang, Lihua⁴ (AUTHOR), Chen, Ning¹ (AUTHOR), Song, Changchun¹ (AUTHOR), Yuan, Fenghui¹ (AUTHOR), Sun, Li¹ (AUTHOR) sunli@iga.ac.cn, Xu, Xiaofeng² (AUTHOR) xxu@sdsu.edu

Source: Journal of Advances in Modeling Earth Systems. Oct2024, Vol. 16 Issue 10, p1-15. 15p.

Subject Terms: *MICROBIAL physiology, *SOIL microbiology, *METHANE, *FUNCTIONAL groups, *CYCLING

Clostridium autoethanogenum alters cofactor synthesis, redox metabolism, and lysine-acetylation in response to elevated H2:CO feedstock ratios for enhancing carbon capture efficiency.

Authors: Davin, Megan E.^1,2 (AUTHOR), Thompson, R. Adam³ (AUTHOR), Giannone, Richard J.² (AUTHOR), Mendelson, Lucas W.³ (AUTHOR), Carper, Dana L.² (AUTHOR), Martin, Madhavi Z.² (AUTHOR), Martin, Michael E.³ (AUTHOR), Engle, Nancy L.² (AUTHOR), Tschaplinski, Timothy J.² (AUTHOR), Brown, Steven D.³ (AUTHOR) steve.brown@lanzatech.com, Hettich, Robert L.² (AUTHOR) hettichrl@ornl.gov

Source: Biotechnology for Biofuels & Bioproducts. 9/3/2024, Vol. 17 Issue 1, p1-16. 16p.

Subject Terms: *CARBON sequestration, *MICROBIAL physiology, *CARBON metabolism, *POST-translational modification, *CARBON fixation, *LYSINE

Reprogramming cellular metabolism to increase the efficiency of microbial cell factories.

Authors: Ding, Qiang^1,2,3 (AUTHOR) qiangd@ahu.edu.cn, Liu, Liming⁴ (AUTHOR) mingll@jiangnan.edu.cn

Source: Critical Reviews in Biotechnology. Aug2024, Vol. 44 Issue 5, p892-909. 18p.

Subject Terms: *MICROBIAL cells, *MICROBIAL physiology, *INTELLIGENT networks, *FACTORIES, *CELL metabolism, *CHEMICAL plants, *INTELLIGENT buildings, *BIOMATERIALS

Effects of Different Nursery Substrates on the Growth Physiology and Rhizosphere Microorganisms of Two Species of Ornamental Bamboo.

Authors: Yang, Menglian¹ (AUTHOR) yangmenglian@stu.sicau.edu.cn, Jiang, Mingyan¹ (AUTHOR) jmy@sicau.edu.cn, Quan, Yixuan¹ (AUTHOR), Yang, Meng¹ (AUTHOR), Li, Zhi¹ (AUTHOR), Yao, Jieying¹ (AUTHOR), Wang, Kaiqing¹ (AUTHOR), Luo, Zhenghua¹ (AUTHOR), Chen, Qibing¹ (AUTHOR)

Source: Agronomy. Feb2025, Vol. 15 Issue 2, p326. 15p.

Subject Terms: *SUBSTRATES (Materials science), *MICROBIAL physiology, *ROOT development, *PATHOGENIC fungi, *MICROBIAL communities, *BAMBOO

Assessing the impact of sewage and wastewater on antimicrobial resistance in nearshore Antarctic biofilms and sediments.

Authors: Clark, Melody S¹ (AUTHOR) mscl@bas.ac.uk, Gregson, Benjamin H² (AUTHOR), Greco, Carla³ (AUTHOR), Nair, Harisree Paramel² (AUTHOR), Clark, Marlon³ (AUTHOR), Evans, Claire⁴ (AUTHOR), Hughes, Kevin A.¹ (AUTHOR), Hwengwere, Kudzai^1,5 (AUTHOR), Leung, Marcus³ (AUTHOR), Peck, Lloyd S¹ (AUTHOR), Walker, Caray A.² (AUTHOR), Chow, William³ (AUTHOR)

Source: Environmental Microbiome. 1/20/2025, Vol. 20 Issue 1, p1-17. 17p.

Subject Terms: *MICROBIAL physiology, *SEWAGE disposal plants, *LIFE sciences, *SEWAGE, *MICROBIAL communities, *BIOFILMS

The proteome is a terminal electron acceptor.

Authors: Flamholz, Avi I.¹ aflamhol@caltech.edu, Goyal, Akshit^2,3, Fischer, Woodward W.⁴, Newman, Dianne K.^1,2 dkn@caltech.edu, Phillips, Rob^1,5 phillips@pboc.caltech.edu

Source: Proceedings of the National Academy of Sciences of the United States of America. 1/7/2025, Vol. 122 Issue 1, p1-59. 71p.

Subject Terms: *MICROBIAL physiology, *MICROBIAL metabolism, *ADENOSINE triphosphate, *CYTOSKELETAL proteins, *ELECTROPHILES

The emerging role of auxins as bacterial signal molecules: Potential biotechnological applications.

Authors: Krell, Tino¹ (AUTHOR), Gavira, José A.² (AUTHOR), Roca, Amalia³ (AUTHOR), Matilla, Miguel A.¹ (AUTHOR) miguel.matilla@eez.csic.es

Source: Microbial Biotechnology. Aug2023, Vol. 16 Issue 8, p1611-1615. 5p.

Subject Terms: *MICROBIAL physiology, *AUXIN, *MICROBIAL metabolism, *SIGNAL detection, *MOLECULES, *PLANT hormones, *BIOSENSORS, *QUORUM sensing

Effect of NH4Cl supplementation on growth, photosynthesis, and triacylglycerol content in Chlamydomonas reinhardtii under mixotrophic cultivation.

Authors: Sittisaree, Wattanapong¹ (AUTHOR) wattanapong.sit@gmail.com, Yokthongwattana, Kittisak¹ (AUTHOR), Aonbangkhen, Chanat^2,3 (AUTHOR), Yingchutrakul, Yodying⁴ (AUTHOR), Krobthong, Sucheewin^2,5 (AUTHOR) Sucheewin82@gmail.com

Source: Journal of Applied Microbiology. Oct2024, Vol. 135 Issue 10, p1-11. 11p.

Subject Terms: *ALGAL biofuels, *MICROBIAL physiology, *CHLAMYDOMONAS reinhardtii, *BIOMASS production, *AMMONIUM chloride, *ALGAL growth

Metabolic Plasticity Shapes Microbial Communities across a Temperature Gradient.

Authors: Sun, Xin^1,2,3,4 (AUTHOR) mreboll1@uci.edu, Favier, Ariel⁵ (AUTHOR), Folmar, Jacquelyn¹ (AUTHOR), Pyenson, Nora C.^1,2 (AUTHOR), Sanchez, Alvaro^1,2 (AUTHOR), Rebolleda-Gómez, María^1,2,3,5 (AUTHOR) mreboll1@uci.edu

Source: American Naturalist. Oct2024, Vol. 204 Issue 4, p381-399. 19p.

Subject Terms: *MICROBIAL physiology, *BIOTIC communities, *MICROBIAL ecology, *MICROBIAL metabolism, *SYNTROPHISM, *MICROBIAL communities

Correction: Muñoz-Villagrán et al. The Thioredoxin Fold Protein (TFP2) from Extreme Acidophilic Leptospirillum sp. CF-1 Is a Chaperedoxin-like Protein That Prevents the Aggregation of Proteins under Oxidative Stress. Int. J. Mol. Sci. 2024, 25 , 6905

Authors: Muñoz-Villagrán, Claudia¹ (AUTHOR), Acevedo-Arbunic, Javiera¹ (AUTHOR), Härtig, Elisabeth² (AUTHOR) e.haertig@tu-braunschweig.de, Sievers, Susanne³ (AUTHOR) daniela.zuehlke@uni-greifswald.de, Zühlke, Daniela³ (AUTHOR), Issotta, Francisco⁴ (AUTHOR), Mascayano, Carolina⁵ (AUTHOR), Jahn, Dieter^2,6 (AUTHOR), Jahn, Martina² (AUTHOR), Levicán, Gloria¹ (AUTHOR) gloria.levican@usach.cl

Source: International Journal of Molecular Sciences. Dec2024, Vol. 25 Issue 23, p12489. 2p.

Subject Terms: *MERGERS & acquisitions, *MICROBIAL physiology, *PROTEIN folding, *MOLECULAR biology, *PUBLISHED articles

Case Studies in the Assessment of Microbial Fitness: Seemingly Subtle Changes Can Have Major Effects on Phenotypic Outcomes.

Authors: Worthan, Sarah B.^1,2 (AUTHOR), McCarthy, Robert D. P.¹ (AUTHOR), Behringer, Megan G.^1,2,3 (AUTHOR) megan.g.behringer@vanderbilt.edu

Source: Journal of Molecular Evolution. Jun2023, Vol. 91 Issue 3, p311-324. 14p.

Subject Terms: *BIOLOGICAL evolution, *MICROBIAL physiology, *PHENOTYPES, *MATERIAL culture, *SAMPLING methods

A customizable and defined medium supporting culturing of Candida albicans, Staphylococcus aureus, and human oral epithelial cells.

Authors: Pasman, Raymond¹, Jianbo Zhang¹, Zaat, Sebastian A. J.², Brul, Stanley¹ s.brul@uva.nl, Krom, Bastiaan P.³ b.krom@acta.nl

Source: Applied & Environmental Microbiology. Aug2024, Vol. 90 Issue 8, p1-16. 16p.

Subject Terms: *HUMAN cell culture, *MICROBIAL physiology, *STAPHYLOCOCCUS aureus, *MICROBIAL cells, *OPACITY (Optics), *CANDIDA albicans

Evaluating host diet effects on microparasites by measuring the stoichiometry of infrapopulations one cell at a time.

Authors: Narr, Charlotte F.¹ (AUTHOR) charlotte.narr@siu.edu, Binger, Scott¹ (AUTHOR), Sedlacek, Erin¹ (AUTHOR), Anderson, Bianca² (AUTHOR), Shoemaker, Grace² (AUTHOR), Stanley, Adrienne¹ (AUTHOR), Stokoski, Madison¹ (AUTHOR), Hall, Ed^2,3 (AUTHOR)

Source: Ecology & Evolution (20457758). Jul2024, Vol. 14 Issue 7, p1-8. 8p.

Subject Terms: Nutrition, Electron spectroscopy, Microbial physiology, Research personnel, Stoichiometry

Effects of biochar on karst lime soil nutrients, soil microbial communities and physiology of Sichuan pepper plants.

Authors: Mao, Qiaozhi¹ (AUTHOR), He, Binghui² (AUTHOR), Ma, Ming¹ (AUTHOR), Wang, Lina¹ (AUTHOR), Koike, Takayoshi^3,4 (AUTHOR), Agathokleous, Evgenios⁵ (AUTHOR) evgenios@nuist.edu.cn

Source: Annals of Applied Biology. Nov2022, Vol. 181 Issue 3, p357-366. 10p.

Subject Terms: *LIMING of soils, *MICROBIAL physiology, *MICROBIAL communities, *BIOCHAR, *GAS exchange in plants, *PLANT-water relationships, *SOILS

Bridging 20 Years of Soil Organic Matter Frameworks: Empirical Support, Model Representation, and Next Steps.

Authors: Rocci, Katherine S.^1,2 (AUTHOR) katie.rocci@colorado.edu, Cotrufo, M. Francesca³ (AUTHOR), Ernakovich, Jessica⁴ (AUTHOR), Foster, Erika⁵ (AUTHOR), Frey, Serita⁴ (AUTHOR), Georgiou, Katerina⁶ (AUTHOR), Grandy, A. Stuart⁴ (AUTHOR), Malhotra, Avni⁷ (AUTHOR), Reich, Peter B.^2,8 (AUTHOR), Schlerman, Else P.⁴ (AUTHOR), Wieder, William R.^1,9 (AUTHOR)

Source: Journal of Geophysical Research. Biogeosciences. Jun2024, Vol. 129 Issue 6, p1-31. 31p.

Subject Terms: *Organic compounds, *Soil animals, *Habitats, *Soil microbiology, Microbial physiology

Soil microbiota and herbivory drive the assembly of tomato plant-associated microbial communities through different mechanisms.

Authors: Malacrinò, Antonino¹ (AUTHOR) antonino.malacrino@unirc.it, Bennett, Alison E.² (AUTHOR)

Source: Communications Biology. 5/13/2024, Vol. 7 Issue 1, p1-10. 10p.

Subject Terms: *MICROBIAL communities, *MICROBIAL physiology, *SOIL microbial ecology, *PLANT metabolism, *INSECT communities, *BACTERIAL communities

Physiological and Microbial Community Analysis During Municipal Organic Waste Leachate Treatment by a Sequential Nitrification-Denitrification Process.

Authors: Martínez-Jardines, Miguel Angel¹ (AUTHOR), de María Cuervo-López, Flor² (AUTHOR), Martínez-Hernández, Sergio¹ (AUTHOR) sermartinez@uv.mx

Source: Water, Air & Soil Pollution. Apr2024, Vol. 235 Issue 4, p1-15. 15p.

Subject Terms: *Waste treatment, *Microbial communities, *Organic wastes, *Leachate, *Soil microbial ecology, *Acclimatization, Upflow anaerobic sludge blanket reactors, Microbial physiology

Myroides species, pathogenic spectrum and clinical microbiology sight in Mexican isolates.

Authors: Colín-Castro, Claudia Adriana¹ (AUTHOR), Ortiz-Álvarez, Jossue Mizael² (AUTHOR), Hernández-Pérez, Cindy Fabiola³ (AUTHOR), Hernández-Durán, Melissa¹ (AUTHOR), García-Hernández, María de Lourdes¹ (AUTHOR), Martínez-Zavaleta, María Guadalupe¹ (AUTHOR), Becerra-Lobato, Noé¹ (AUTHOR), Cervantes-Hernández, Mercedes Isabel¹ (AUTHOR), Rosas-Alquicira, Graciela¹ (AUTHOR), Cerón-González, Guillermo¹ (AUTHOR), Méndez-Sotelo, Braulio Josué⁴ (AUTHOR), García-Contreras, Rodolfo⁵ (AUTHOR), Franco-Cendejas, Rafael⁶ (AUTHOR) esaulopezjacome@quimica.unam.mx, López-Jácome, Luis Esaú^1,7 (AUTHOR) raffcend@yahoo.com

Source: PLoS ONE. 11/4/2024, Vol. 19 Issue 11, p1-17. 17p.

Subject Terms: *MEDICAL microbiology, *WHOLE genome sequencing, *MICROBIAL physiology, *OPPORTUNISTIC infections, *RIBOSOMAL RNA, *TRANSFER RNA

New insights into microbial bile salt hydrolases: from physiological roles to potential applications.

Authors: Dong, Zixing, Yang, Shuangshuang, Tang, Cunduo, Li, Dandan, Kan, Yunchao, Yao, Lunguang

Source: Frontiers in Microbiology; 2025, p1-15, 15p

Subject Terms: BILE salts, BILE acids, GUT microbiome, MICROBIAL physiology, HUMAN microbiota

Feature Review Papers in Microbial Metabolism, Physiology and Genetics.

Authors: Willaert, Ronnie G.

Source: Fermentation (Basel); Feb2025, Vol. 11 Issue 2, p78, 6p

Subject Terms: BIOTECHNOLOGY, BIOLOGICAL systems, MICROBIAL physiology, FOOD biotechnology, BEER flavor & odor, HYDROXYCINNAMIC acids, CIRCADIAN rhythms, ETHYL esters, CACAO beans