Minimal transcriptional regulation of horizontally transferred photosynthesis genes in phototrophic bacterium Gemmatimonas phototrophica

Authors: Karel Kopejtka, Jürgen Tomasch, Sahana Shivaramu, Mohit Kumar Saini, David Kaftan, Michal Koblížek

Source: mSystems, Vol 9, Iss 9 (2024)

Subject Terms: Gemmatimonadota, anoxygenic photosynthesis, bacteriochlorophyll, horizontal gene transfer, transcriptomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/dcf442d94738418b847e2697b63a7749

Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters

Authors: Cristian Villena-Alemany, Izabela Mujakić, Livia K. Fecskeová, Jason Woodhouse, Adrià Auladell, Jason Dean, Martina Hanusová, Magdalena Socha, Carlota R. Gazulla, Hans-Joachim Ruscheweyh, Shinichi Sunagawa, Vinicius Silva Kavagutti, Adrian-Ştefan Andrei, Hans-Peter Grossart, Rohit Ghai, Michal Koblížek, Kasia Piwosz

Source: Microbiome, Vol 12, Iss 1, Pp 1-14 (2024)

Subject Terms: Freshwaters, Aquatic microbial ecology, Microbial seasonal succession, Long-term sampling, Aerobic anoxygenic phototrophs, pufM gene, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/391c061593ed4fdc906bacefad285879

On the evolution of chromosomal regions with high gene strand bias in bacteria

Authors: Jürgen Tomasch, Karel Kopejtka, Sahana Shivaramu, Izabela Mujakić, Michal Koblížek

Source: mBio, Vol 15, Iss 6 (2024)

Subject Terms: genome organization, genome evolution, gene order, strand bias, Gemmatimonadota, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/0f34573fe0724411b16903abf5a725d6

A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer

Authors: Jürgen Tomasch, Karel Kopejtka, Tomáš Bílý, Alastair T. Gardiner, Zdenko Gardian, Sahana Shivaramu, Michal Koblížek, David Kaftan

Source: mSystems, Vol 9, Iss 3 (2024)

Subject Terms: AAP, gene expression, light adaptation, photosynthesis, Proteobacteria, Sediminicoccus, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/db12387973b640ef8bc2150a417bcea2

Multi-environment ecogenomics analysis of the cosmopolitan phylum Gemmatimonadota

Authors: Izabela Mujakić, Pedro J. Cabello-Yeves, Cristian Villena-Alemany, Kasia Piwosz, Francisco Rodriguez-Valera, Antonio Picazo, Antonio Camacho, Michal Koblížek

Source: Microbiology Spectrum, Vol 11, Iss 5 (2023)

Subject Terms: Gemmatimonadota, gemmatimonadetes, anoxygenic phototrophs, MAGs, metagenome, RuBisCO, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/31246c45a2094a55ba1126e4dd1a1ef2

Study of microbiocenosis of canine dental biofilms

Authors: Jana Kačírová, Aladár Maďari, Rastislav Mucha, Lívia K. Fecskeová, Izabela Mujakic, Michal Koblížek, Radomíra Nemcová, Marián Maďar

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-9 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/ea7e649e30b24446a7fd53056a456a29

Structure elucidation of the novel carotenoid gemmatoxanthin from the photosynthetic complex of Gemmatimonas phototrophica AP64

Authors: Nupur, Marek Kuzma, Jan Hájek, Pavel Hrouzek, Alastair T. Gardiner, Martin Lukeš, Martin Moos, Petr Šimek, Michal Koblížek

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/3ca2c5e1db0449eaa3628bc1677e605b

Artificial neural network analysis of microbial diversity in the central and southern Adriatic Sea

Authors: Danijela Šantić, Kasia Piwosz, Frano Matić, Ana Vrdoljak Tomaš, Jasna Arapov, Jason Lawrence Dean, Mladen Šolić, Michal Koblížek, Grozdan Kušpilić, Stefanija Šestanović

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-15 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/d95352bcc9f84a6193e5c3a908299892

Lineage-Specific Growth Curves Document Large Differences in Response of Individual Groups of Marine Bacteria to the Top-Down and Bottom-Up Controls

Authors: Lívia K. Fecskeová, Kasia Piwosz, Danijela Šantić, Stefanija Šestanović, Ana Vrdoljak Tomaš, Martina Hanusová, Mladen Šolić, Michal Koblížek

Source: mSystems, Vol 6, Iss 5 (2021)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/68663917244e44c9a5e9f080e0ce5503

The Influence of Calcium on the Growth, Morphology and Gene Regulation in Gemmatimonas phototrophica

Authors: Sahana Shivaramu, Jürgen Tomasch, Karel Kopejtka, Nupur, Mohit Kumar Saini, Syed Nadeem Hussain Bokhari, Hendrik Küpper, Michal Koblížek

Source: Microorganisms, Vol 11, Iss 1, p 27 (2022)

Subject Terms: Gemmatimonas phototrophica, anoxygenic phototrophic bacteria, horizontal gene transfer, calcium, transcriptomics, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/1/27; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/7c05b4f9c4504f9e9e25361bcbbdad23

Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes

Authors: Izabela Mujakić, Adrian-Ştefan Andrei, Tanja Shabarova, Lívia Kolesár Fecskeová, Michaela M. Salcher, Kasia Piwosz, Rohit Ghai, Michal Koblížek

Source: mSystems, Vol 6, Iss 2 (2021)

Subject Terms: Gemmatimonadota, Gemmatimonadetes, anoxygenic phototrophs, aquatic bacteria, MAGs, metagenome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/ba95220efd1f42b0bb84a4457a75a41a

Gemmatimonas groenlandica sp. nov. Is an Aerobic Anoxygenic Phototroph in the Phylum Gemmatimonadetes

Authors: Yonghui Zeng, Nupur, Naicheng Wu, Anne Mette Madsen, Xihan Chen, Alastair T. Gardiner, Michal Koblížek

Source: Frontiers in Microbiology, Vol 11 (2021)

Subject Terms: MALDI-TOF MS, bacterial isolation, phototrophy, Gemmatimonadetes, oligotrophic environment, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2020.606612/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/3289509704324a039f14174681bbf659

Simultaneous Presence of Bacteriochlorophyll and Xanthorhodopsin Genes in a Freshwater Bacterium

Authors: Karel Kopejtka, Jürgen Tomasch, Yonghui Zeng, Vadim Selyanin, Marko Dachev, Kasia Piwosz, Martin Tichý, David Bína, Zdenko Gardian, Boyke Bunk, Henner Brinkmann, Robert Geffers, Ruben Sommaruga, Michal Koblížek

Source: mSystems, Vol 5, Iss 6 (2020)

Subject Terms: aerobic anoxygenic phototrophic bacteria, bacteriochlorophyll a, gene expression, photosynthesis gene cluster, rhodopsin, Sphingomonadaceae, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/d9a0ca3fc05c4a21b0314685cd3356da

Erratum for Piwosz et al., 'Light and Primary Production Shape Bacterial Activity and Community Composition of Aerobic Anoxygenic Phototrophic Bacteria in a Microcosm Experiment'

Authors: Kasia Piwosz, Ana Vrdoljak, Thijs Frenken, Juan Manuel González-Olalla, Danijela Šantić, R. Michael McKay, Kristian Spilling, Lior Guttman, Petr Znachor, Izabela Mujakić, Lívia Kolesár Fecskeová, Luca Zoccarato, Martina Hanusová, Andrea Pessina, Tom Reich, Hans-Peter Grossart, Michal Koblížek

Source: mSphere, Vol 5, Iss 4 (2020)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/0a1fea514d0947e3b4aba8e599ae92c3

Light and Primary Production Shape Bacterial Activity and Community Composition of Aerobic Anoxygenic Phototrophic Bacteria in a Microcosm Experiment

Authors: Kasia Piwosz, Ana Vrdoljak, Thijs Frenken, Juan Manuel González-Olalla, Danijela Šantić, R. Michael McKay, Kristian Spilling, Lior Guttman, Petr Znachor, Izabela Mujakić, Lívia Kolesár Fecskeová, Luca Zoccarato, Martina Hanusová, Andrea Pessina, Tom Reich, Hans-Peter Grossart, Michal Koblížek

Source: mSphere, Vol 5, Iss 4 (2020)

Subject Terms: phytoplankton-bacteria coupling, aerobic anoxygenic phototrophic bacteria, bacterial community composition, AAP community composition, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/0144a2c1fc7c4410923a2f33b43d40f3

Phylum Gemmatimonadota and Its Role in the Environment

Authors: Izabela Mujakić, Kasia Piwosz, Michal Koblížek

Source: Microorganisms, Vol 10, Iss 1, p 151 (2022)

Subject Terms: Gemmatimonadota, Gemmatimonadetes, anoxygenic photosynthesis, photosynthetic gene cluster, MAGs, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/10/1/151; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/b243aaa232fc4289bc511d4ca6fc7155

Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5

Authors: Karel Kopejtka, Yonghui Zeng, David Kaftan, Vadim Selyanin, Zdenko Gardian, Jürgen Tomasch, Ruben Sommaruga, Michal Koblížek

Source: Microorganisms, Vol 9, Iss 4, p 768 (2021)

Subject Terms: aerobic anoxygenic phototrophic bacteria, bacteriochlorophyll a, photosynthesis genes, rhodopsin, Sphingomonadaceae, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/9/4/768; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/a54609a1b86e4791b41a97f0974d9805

Unique double concentric ring organization of light harvesting complexes in Gemmatimonas phototrophica.

Authors: Marko Dachev, David Bína, Roman Sobotka, Lenka Moravcová, Zdenko Gardian, David Kaftan, Václav Šlouf, Marcel Fuciman, Tomáš Polívka, Michal Koblížek

Source: PLoS Biology, Vol 15, Iss 12, p e2003943 (2017)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5749889?pdf=render; https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/4c60abf08c094ad7ade0b422fe49a8b4

Diverse arrangement of photosynthetic gene clusters in aerobic anoxygenic phototrophic bacteria.

Authors: Qiang Zheng, Rui Zhang, Michal Koblížek, Ekaterina N Boldareva, Vladimir Yurkov, Shi Yan, Nianzhi Jiao

Source: PLoS ONE, Vol 6, Iss 9, p e25050 (2011)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3176799?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f480b36104bb49aca2e1b364b957f651

Novel acsF Gene Primers Revealed a Diverse Phototrophic Bacterial Population, Including Gemmatimonadetes, in Lake Taihu (China).

Authors: Yili Huang¹ yilihuang@zju.edu.cn, Yanhua Zeng¹, Hang Lu¹, Hao Feng¹, Yonghui Zeng², Michal Koblížek³ oblizek@alga.cz

Source: Applied & Environmental Microbiology. Sep2016, Vol. 82 Issue 18, p5587-5594. 8p.

Subject Terms: *PHOTOSYNTHETIC bacteria, *PHYLOGENY, *BACTERIOCHLOROPHYLLS, *RIBOSOMAL RNA, *CHLOROBIACEAE

Geographic Terms: GOBI Desert (Mongolia & China)