Genetic polymorphisms associated with adverse pregnancy outcomes in nulliparas

Authors: Raiyan R. Khan, Rafael F. Guerrero, Ronald J. Wapner, Matthew W. Hahn, Anita Raja, Ansaf Salleb-Aouissi, William A. Grobman, Hyagriv Simhan, Robert M. Silver, Judith H. Chung, Uma M. Reddy, Predrag Radivojac, Itsik Pe’er, David M. Haas

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-11 (2024)

Subject Terms: Genetic association, Preeclampsia, Preterm birth, Gestational diabetes, Fetal death, Stillbirth, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/3d4e841d56df4a31ba7c73f2e48f8b88

High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS

Authors: Douglas B. Rusch, Jie Huang, Chris Hemmerich, Matthew W. Hahn

Source: ISME Communications, Vol 2, Iss 1, Pp 1-13 (2022)

Subject Terms: Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6151

Access URL: https://doaj.org/article/192691b3cf3e486e9788b1781b1e49b8

The Potential for a Released Autosomal X-Shredder Becoming a Driving-Y Chromosome and Invasively Suppressing Wild Populations of Malaria Mosquitoes

Authors: Yehonatan Alcalay, Silke Fuchs, Roberto Galizi, Federica Bernardini, Roya Elaine Haghighat-Khah, Douglas B. Rusch, Jeffrey R. Adrion, Matthew W. Hahn, Pablo Tortosa, Rachel Rotenberry, Philippos Aris Papathanos

Source: Frontiers in Bioengineering and Biotechnology, Vol 9 (2021)

Subject Terms: gene drive, malaria, sex-ratio distortion, genetic control, risk assessment, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fbioe.2021.752253/full; https://doaj.org/toc/2296-4185

Access URL: https://doaj.org/article/a6b4faa8d2fc436aa5fb62f07c00713e

The effects of introgression across thousands of quantitative traits revealed by gene expression in wild tomatoes

Authors: Mark S. Hibbins, Matthew W. Hahn

Source: PLoS Genetics, Vol 17, Iss 11 (2021)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8601620/?tool=EBI; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/0c8fe3a1e1e142ec93f0d2f3d3ab9a16

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Authors: Robert M. Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten J. M. F. Reijnders, Romain Feron, Sèverine Bérard, Phillip George, Matthew W. Hahn, Paul I. Howell, Maryam Kamali, Sergey Koren, Daniel Lawson, Gareth Maslen, Ashley Peery, Adam M. Phillippy, Maria V. Sharakhova, Eric Tannier, Maria F. Unger, Simo V. Zhang, Max A. Alekseyev, Nora J. Besansky, Cedric Chauve, Scott J. Emrich, Igor V. Sharakhov

Source: BMC Biology, Vol 18, Iss 1, Pp 1-20 (2020)

Subject Terms: Genome assembly, Gene synteny, Comparative genomics, Mosquito genomes, Orthology, Bioinformatics, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/0e880bd2992b417b9c80e8cec3c83014

Gene content evolution in the arthropods

Authors: Gregg W. C. Thomas, Elias Dohmen, Daniel S. T. Hughes, Shwetha C. Murali, Monica Poelchau, Karl Glastad, Clare A. Anstead, Nadia A. Ayoub, Phillip Batterham, Michelle Bellair, Greta J. Binford, Hsu Chao, Yolanda H. Chen, Christopher Childers, Huyen Dinh, Harsha Vardhan Doddapaneni, Jian J. Duan, Shannon Dugan, Lauren A. Esposito, Markus Friedrich, Jessica Garb, Robin B. Gasser, Michael A. D. Goodisman, Dawn E. Gundersen-Rindal, Yi Han, Alfred M. Handler, Masatsugu Hatakeyama, Lars Hering, Wayne B. Hunter, Panagiotis Ioannidis, Joy C. Jayaseelan, Divya Kalra, Abderrahman Khila, Pasi K. Korhonen, Carol Eunmi Lee, Sandra L. Lee, Yiyuan Li, Amelia R. I. Lindsey, Georg Mayer, Alistair P. McGregor, Duane D. McKenna, Bernhard Misof, Mala Munidasa, Monica Munoz-Torres, Donna M. Muzny, Oliver Niehuis, Nkechinyere Osuji-Lacy, Subba R. Palli, Kristen A. Panfilio, Matthias Pechmann, Trent Perry, Ralph S. Peters, Helen C. Poynton, Nikola-Michael Prpic, Jiaxin Qu, Dorith Rotenberg, Coby Schal, Sean D. Schoville, Erin D. Scully, Evette Skinner, Daniel B. Sloan, Richard Stouthamer, Michael R. Strand, Nikolaus U. Szucsich, Asela Wijeratne, Neil D. Young, Eduardo E. Zattara, Joshua B. Benoit, Evgeny M. Zdobnov, Michael E. Pfrender, Kevin J. Hackett, John H. Werren, Kim C. Worley, Richard A. Gibbs, Ariel D. Chipman, Robert M. Waterhouse, Erich Bornberg-Bauer, Matthew W. Hahn, Stephen Richards

Source: Genome Biology, Vol 21, Iss 1, Pp 1-14 (2020)

Subject Terms: Arthropods, Genome assembly, Genomics, Protein domains, Gene content, Evolution, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/e2b9c942e13d4b4295d07ee646e36903

Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers

Authors: Amanda K. Broz, Rafael F. Guerrero, April M. Randle, You Soon Baek, Matthew W. Hahn, Patricia A. Bedinger

Source: BMC Plant Biology, Vol 17, Iss 1, Pp 1-17 (2017)

Subject Terms: Interspecific reproductive barriers, Interpopulation interactions, Plant mating system, Pollen-pistil transcriptomes, Self-incompatibility, Solanum habrochaites, Botany, QK1-989

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12870-017-1032-4; https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/2c2a47db0ed34af888ef61778811154d

The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates

Authors: Lucie A Bergeron, Søren Besenbacher, Tychele Turner, Cyril J Versoza, Richard J Wang, Alivia Lee Price, Ellie Armstrong, Meritxell Riera, Jedidiah Carlson, Hwei-yen Chen, Matthew W Hahn, Kelley Harris, April Snøfrid Kleppe, Elora H López-Nandam, Priya Moorjani, Susanne P Pfeifer, George P Tiley, Anne D Yoder, Guojie Zhang, Mikkel H Schierup

Source: eLife, Vol 11 (2022)

Subject Terms: mutation rate, ngs analysis, pedigree-based estimation, computational pipeline, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/73577; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/d731add1c7b74d45809114cfd96ce456

Determining the probability of hemiplasy in the presence of incomplete lineage sorting and introgression

Authors: Mark S Hibbins, Matthew JS Gibson, Matthew W Hahn

Source: eLife, Vol 9 (2020)

Subject Terms: introgression, convergent evolution, phylogenetics, comparative methods, gene tree discordance, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/63753; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/dbdaeb4e0a8c484a84e432aeba7cca7b

A multispecies coalescent model for quantitative traits

Authors: Fábio K Mendes, Jesualdo A Fuentes-González, Joshua G Schraiber, Matthew W Hahn

Source: eLife, Vol 7 (2018)

Subject Terms: quantitative traits, genealogical discordance, hemiplasy, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/36482; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/57f254c7ded2424797b044b9254d8c4b

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation.

Authors: James B Pease, David C Haak, Matthew W Hahn, Leonie C Moyle

Source: PLoS Biology, Vol 14, Iss 2, p e1002379 (2016)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4752443?pdf=render; https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/0c54f8eb075e421f90068c5ffacf427a

Testing the ortholog conjecture with comparative functional genomic data from mammals.

Authors: Nathan L Nehrt, Wyatt T Clark, Predrag Radivojac, Matthew W Hahn

Source: PLoS Computational Biology, Vol 7, Iss 6, p e1002073 (2011)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21695233/?tool=EBI; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/1081c89f4e7944239ea8d61ff2938bb7

Very few RNA and DNA sequence differences in the human transcriptome.

Authors: Daniel R Schrider, Jean-Francois Gout, Matthew W Hahn

Source: PLoS ONE, Vol 6, Iss 10, p e25842 (2011)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3192132?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/ae4a8913d1ad4259866ce8daa1885b3f

The evolution of mammalian gene families.

Authors: Jeffery P Demuth, Tijl De Bie, Jason E Stajich, Nello Cristianini, Matthew W Hahn

Source: PLoS ONE, Vol 1, p e85 (2006)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC1762380?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/bdfbeef772f849e6a18c411172e530b7

All Human-Specific Gene Losses Are Present in the Genome as Pseudogenes.

Authors: Daniel R. Schrider, James C. Costello, Matthew W. Hahn

Source: Journal of Computational Biology; Oct2009, Vol. 16 Issue 10, p1419-1427, 9p

Random drift and large shifts in popularity of dog breeds.

Authors: Harold A. Herzog, R. Alexander Bentley, Matthew W. Hahn

Source: Proceedings of the Royal Society B: Biological Sciences; Aug2004 Supplement 5, Vol. 271, p353-356, 4p

Subject Terms: POPULATION genetics, DOGS, BREEDING, BIOLOGY

Random drift and culture change.

Authors: R. Alexander Bentley¹, Matthew W. Hahn², Stephen J. Shennan¹

Source: Proceedings of the Royal Society B: Biological Sciences. Jul2004, Vol. 271 Issue 1547, p1443-1450. 8p.

Subject Terms: *CULTURE, *PATENTS, *POTTERY, *INTELLECTUAL property

Drift as a mechanism for cultural change: an example from baby names.

Authors: Matthew W. Hahn¹, R. Alexander Bentley²

Source: Proceedings of the Royal Society B: Biological Sciences. Aug2003 Supplement 1, Vol. 270, p120. 4p.

Subject Terms: *SOCIAL change, *SOCIAL sciences, *POPULATION

Geographic Terms: UNITED States

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CAFE: a computational tool for the study of gene family evolution.

Authors: Tijl De Bie, Nello Cristianini, Jeffery P. Demuth, Matthew W. Hahn

Source: Bioinformatics; May2006, Vol. 22 Issue 10, p1269-1271, 3p