Cutting-Edge Approaches to Cell Segmentation in Imaging Mass Cytometry: A Detailed Review

Authors: Shaaban, Aya M., Salem, Nancy M., Mahmoud, Lamees N

Source: 2024 6th Novel Intelligent and Leading Emerging Sciences Conference (NILES) Novel Intelligent and Leading Emerging Sciences Conference (NILES), 2024 6th. :469-474 Oct, 2024

Relation: 2024 6th Novel Intelligent and Leading Emerging Sciences Conference (NILES)

Pushing the Limits of Cell Segmentation Models for Imaging Mass Cytometry

Authors: Bird, Kimberley M., Ye, Xujiong, Race, Alan M., Brown, James M.

Source: 2024 IEEE International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2024 IEEE International Symposium on. :1-5 May, 2024

Relation: 2024 IEEE International Symposium on Biomedical Imaging (ISBI)

NCL-SM: A Fully Annotated Dataset of Images from Human Skeletal Muscle Biopsies

Authors: Khan, Atif, Lawless, Conor, Vincent, Amy E, Warren, Charlotte, Leo, Valeria Di, Gomes, Tiago, McGough, A. Stephen

Source: 2023 IEEE International Conference on Big Data (BigData) Big Data (BigData), 2023 IEEE International Conference on. :3704-3710 Dec, 2023

Relation: 2023 IEEE International Conference on Big Data (BigData)

CSIFNet: Deep multimodal network based on cellular spatial information fusion for survival prediction

Authors: Xiao, Siqi, Dai, Zhiming

Source: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2023 IEEE International Conference on. :944-948 Dec, 2023

Relation: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Integrated bulk RNA sequencing and mass cytometry analysis reveal the circulating immune landscape in ischemic and hemorrhagic Moyamoya disease

Authors: Chenglong Liu, Peicong Ge, Siqi Mou, Yuheng Pang, Liujia Chan, Junsheng Li, Qiheng He, Wei Liu, Bojian Zhang, Zhikang Zhao, Zhiyao Zheng, Shuang Wang, Wei Sun, Qian Zhang, Rong Wang, Yan Zhang, Wenjing Wang, Dong Zhang, Jizong Zhao

Source: BMC Immunology, Vol 26, Iss 1, Pp 1-17 (2025)

Subject Terms: Moyamoya disease, Ischemia, Hemorrhage, Mass cytometry, Peripheral immune profiles, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2172

Access URL: https://doaj.org/article/158ef9b69673408a94c382bea303859b

The phenogenomic landscapes of pleural mesothelioma tumor microenvironment predict clinical outcomes

Authors: Federica Torricelli, Filomena Spada, Cynthia Bishop, Katrina Todd, Daisuke Nonaka, Nedyalko Petrov, Manuela Terranova Barberio, Alan G. Ramsay, Richard Ellis, Alessia Ciarrocchi, Benedetta Apollonio, Andrea Billè

Source: Journal of Translational Medicine, Vol 23, Iss 1, Pp 1-16 (2025)

Subject Terms: Mesothelioma, Imaging mass cytometry, Whole genome sequencing, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/1479-5876

Access URL: https://doaj.org/article/d8c082cc8b7e42f8b867f1cab77091ab

Proteasome inhibition enhances oncolytic reovirus therapy in multiple myeloma independently of its direct cytotoxic effects

Authors: Ada Alice Dona, Theophilus Tandoh, Lokesh Nigam, Mahmoud Singer, Enrico Caserta, Mariam Murtadha, Yinghui Zhu, Milad Moloudizargari, Preeti Sharma, Ottavio Napolitano, Janet Winchester, Arnab Chowdhury, Alex Pozhitkov, James F. Sanchez, Hawa Vahed, Guido Marcucci, Matt Coffey, Gerard Nuovo, Douglas W. Sborov, Flavia Pichiorri, Craig C Hofmeister

Source: Journal of Hematology & Oncology, Vol 18, Iss 1, Pp 1-21 (2025)

Subject Terms: Proteasome inhibitors, Multiple myeloma, Oncolytic therapy, Reovirus, Mass cytometry, Monocytes, Diseases of the blood and blood-forming organs, RC633-647.5, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1756-8722

Access URL: https://doaj.org/article/93d8e62d0ec54172ba2b1c709a46b8f8

Explainable Deep Learning to Profile Mitochondrial Disease Using High Dimensional Protein Expression Data

Authors: Khan, Atif, Lawless, Conor, Vincent, Amy E, Pilla, Satish, Ramesh, Sushanth, McGough, A. Stephen

Source: 2022 IEEE International Conference on Big Data (Big Data) Big Data (Big Data), 2022 IEEE International Conference on. :4375-4384 Dec, 2022

Relation: 2022 IEEE International Conference on Big Data (Big Data)

Mass cytometry: exploring the immune landscape of systemic autoimmune and inflammatory diseases in the past fourteen years

Authors: Aïcha Kante, Mathieu F. Chevalier, Damien Sène, Jeanne Chauffier, Stéphane Mouly, Benjamin Glenn Chousterman, Fériel Azibani, Benjamin Terrier, Théo Pezel, Cloé Comarmond

Source: Frontiers in Immunology, Vol 15 (2025)

Subject Terms: mass cytometry, CyTOF, imaging mass cytometry, systemic autoimmune diseases, systemic inflammatory diseases, single-cell, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1509782/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/e5f569860dca4a05a6382b957b66092f

PMN-MDSC: A Culprit Behind Immunosenescence and Increased Susceptibility to Clostridioides difficile Infection During Aging

Authors: Jianmin Wu, Ming Zhang, Hao Zhang, Mingxuan Sheng, Jiazeng Sun, Fang Wu, Haina Gao, Lishui Chen, Zhili Li, Qiyu Tian, Longjiao Zhu, Bing Fang

Source: Engineering, Vol 42, Iss , Pp 59-73 (2024)

Subject Terms: PMN-MDSC, Immunosenescence, Aging, Mass cytometry, Clostridioides difficile, Engineering (General). Civil engineering (General), TA1-2040

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2095809924003886; https://doaj.org/toc/2095-8099

Access URL: https://doaj.org/article/38451d5dfa444a0785ee97deea53662c

Protocol for phenotyping mouse myeloid and lymphoid cells by mass cytometry

Authors: Laura Morin, Brice Autier, Patrice Hemon, Simon Le Gallou, Mikael Roussel, Sarah Dion, Valérie Lecureur

Source: STAR Protocols, Vol 6, Iss 1, Pp 103684- (2025)

Subject Terms: cell isolation, single cell, mass cytometry, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666166725000905; https://doaj.org/toc/2666-1667

Access URL: https://doaj.org/article/122fcd4e27e84010a9a564208a741541

The gut-brain-axis one year after treatment with cladribine tablets in patients with relapsing remitting multiple sclerosis: a pilot study

Authors: Jeske van Pamelen, Carla Rodriguez-Mogeda, Lynn van Olst, Susanne M. A. van der Pol, Maarten L. Boon, Janet de Beukelaar, Oliver H. H. Gerlach, Andries E. Budding, Joep Killestein, Helga E. de Vries, Leo H. Visser

Source: Frontiers in Immunology, Vol 16 (2025)

Subject Terms: relapsing remitting multiple sclerosis, cladribine tablets, gut-brain-axis, microbiota, mass cytometry by time-of-flight, 16S-23S rDNA interspace profiling, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2025.1514762/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/22eead8610924fb09481754596944577

Toward spatial glycomics and glycoproteomics: Innovations and applications

Authors: Patcharaporn Boottanun, Sayaka Fuseya, Atsushi Kuno

Source: BBA Advances, Vol 7, Iss , Pp 100146- (2025)

Subject Terms: Automated analysis, Artificial intelligence, Glycomics, Glycoproteomics, Imaging mass cytometry, Lectin microarray, Biochemistry, QD415-436, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667160325000092; https://doaj.org/toc/2667-1603

Access URL: https://doaj.org/article/04defebf60d24614adf2fe42842a7e6b

ESCHR: a hyperparameter-randomized ensemble approach for robust clustering across diverse datasets

Authors: Sarah M. Goggin, Eli R. Zunder

Source: Genome Biology, Vol 25, Iss 1, Pp 1-27 (2024)

Subject Terms: Single-cell RNA-seq, Mass cytometry, Consensus clustering, Soft clustering, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/55fb6f1d7752459ab5aa75c041d0273d

Dietary fibers boost gut microbiota-produced B vitamin pool and alter host immune landscape

Authors: Erica T. Grant, Amy Parrish, Marie Boudaud, Oliver Hunewald, Akiyoshi Hirayama, Markus Ollert, Shinji Fukuda, Mahesh S. Desai

Source: Microbiome, Vol 12, Iss 1, Pp 1-23 (2024)

Subject Terms: Microbiome, Dietary fiber, B vitamins, Mass cytometry, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/c4f3e084b9bf436aa3711d142b248562

Overcoming the age-dependent SARS-CoV-2 vaccine response through hybrid immunity: analysis of humoral and cellular immunity with mass cytometry profiling

Authors: Zayakhuu Gerelkhuu, Sehee Park, Kyoung Hwa Lee, Yong Chan Kim, Sook Jin Kwon, Kyoung-Ho Song, Eu Suk Kim, Young Goo Song, Yoon Soo Park, Jin Young Ahn, Jun Yong Choi, Won Suk Choi, Seongman Bae, Sung-Han Kim, Shin-Woo Kim, Ki Tae Kwon, Hye Won Jeong, Kyong Ran Peck, Eun-Suk Kang, June-Young Koh, Jae-Hoon Ko, Tae Hyun Yoon

Source: Immunity & Ageing, Vol 21, Iss 1, Pp 1-11 (2024)

Subject Terms: Aging, COVID-19 vaccines, Mass cytometry, Immunity, Immunologic diseases. Allergy, RC581-607, Geriatrics, RC952-954.6

File Description: electronic resource

Relation: https://doaj.org/toc/1742-4933

Access URL: https://doaj.org/article/7e62e3672a104b3fb79f3f7a78c410c6

Utility of High-Throughput Imaging Mass Cytometry for Cancer Research: A feasibility study

Authors: Thirumal, Sindhura, Jamzad, Amoon, Cotechini, Tiziana, Hindmarch, Charles T., Hardy, Celine, Kim, Nathalia, Simpson, Amber, Graham, Charles H., Berman, David M., Siemens, D. Robert, Mousavi, Parvin

Source: 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI) Biomedical and Health Informatics (BHI), 2021 IEEE EMBS International Conference on. :1-4 Jul, 2021

Relation: 2021 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI)

Integrated network pharmacology, mass cytometry and multi-omics analysis the effect of Jingfang granule on intestinal immune disorder in mice with cold-dampness syndrome

Authors: Li, Shirong ^{a, 1}, Liu, Mingfei ^{a, 1}, Pan, Lihong ^{b, 1}, Feng, Qun ^c, Lu, Xiaoyan ^b, Yao, Jingchun ^{b, ⁎}, Xiao, Xuefeng ^{a, ⁎}

Source: In Journal of Pharmaceutical and Biomedical Analysis 15 March 2025 255

Pulmonary and systemic effects of inhaled crystalline silica in the HOCl-induced mouse model of systemic sclerosis: An experimental model of Erasmus syndrome.

Authors: Morin, Laura ^a, Zimmermann, François ^b, Lelong, Marie ^a, Ferrant, Juliette ^{c, d}, Hemon, Patrice ^e, Patry, Salomé ^a, Le Tallec, Erwan ^b, Uwambayinema, Francine ^f, Yakoub, Yousof ^f, Dumontet, Erwan ^{c, d}, Huaux, François ^f, Lescoat, Alain ^b, Lecureur, Valérie ^{a, ⁎}

Source: In Clinical Immunology February 2025 271

Congestion Enriches Intra-hepatic macrophages Through Reverse Zonation of CXCL9 in Liver Sinusoidal Endothelial Cells

Authors: Ma, Siyuan ^{1, ∗}, Habash, Nawras W. ^{2, ∗}, Dehankar, Mrunal K. ³, Jalan-Sakrikar, Nidhi ⁴, Cooper, Shawna A. ^{4, 5}, Anwar, Abid A. ⁴, Jerez, Sofia ⁴, Sutthirat, Papawee ⁴, Gao, Jinhang ⁶, Diamond, Tamir ^{2, 8}, Jiao, Jing ⁷, Qiu, Caixin ⁹, Yang, Jingchun ⁴, Ilyas, Sumera I. ⁴, Lee, Markcus ⁴, Yaqoob, Usman ⁴, Cao, Sheng ⁴, Wells, Rebecca G. ⁷, Shah, Vijay H. ⁴, Hilscher, Moira B. ^{4, ∗}

Source: In Cellular and Molecular Gastroenterology and Hepatology January 2025