No-Reference Image Quality Assessment Of T2-Weighted Magnetic Resonance Images In Prostate Cancer Patients

Authors: Masoudi, Samira, Harmon, Stephanie, Mehralivand, Sherif, Lay, Nathan, Bagci, Ulas, Wood, Bradford J., Pinto, Peter A., Choyke, Peter, Turkbey, Baris

Source: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2021 IEEE 18th International Symposium on. :1201-1205 Apr, 2021

Relation: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)

Adipose Tissue Segmentation in Unlabeled Abdomen MRI using Cross Modality Domain Adaptation

Authors: Masoudi, Samira, Anwar, Syed M., Harmon, Stephanie A., Choyke, Peter L., Turkbey, Baris, Bagci, Ulas

Source: 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) Engineering in Medicine & Biology Society (EMBC), 2020 42nd Annual International Conference of the IEEE. :1624-1628 Jul, 2020

Relation: 2020 42nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) in conjunction with the 43rd Annual Conference of the Canadian Medical and Biological Engineering Society

Feature Interpretation Using Generative Adversarial Networks (FIGAN): A Framework for Visualizing a CNN’s Learned Features

Authors: Hasenstab, Kyle A., Huynh, Justin, Masoudi, Samira, Cunha, Guilherme M., Pazzani, Michael, Hsiao, Albert

Source: IEEE access. 11:5144-5160

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175758613.0x000001&indx=1&recIds=ETOCvdc_100175758613.0x000001

Microtubule Motility Analysis based on Time-Lapse Fluorescence Microscopy

Authors: Masoudi, Samira, Wright, Cameron H. G., Gatlin, Jesse C., Oakey, John. S.

Source: journal of Biomedical Sciences Instrumentation, vol 52, pages 126--133, April 2016, published by ISAs

Subject Terms: Quantitative Biology - Subcellular Processes, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/1905.11451

Instance-Level Microtubule Tracking

Authors: Masoudi, Samira, Razi, Afsaneh, Wright, Cameron H. G., Gatlin, Jay C., Bagci, Ulas

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1901.06006

Multiple Microtubule Tracking in Microscopy Time-Lapse Images Using Piecewise-stationary Multiple Motion Model Kalman Smoother

Authors: Masoudi, Samira, Wright, Cameron H. G., Rahnavard, Nazanin, Gatlin, Jay C., Oakey, John S.

Source: Biomedical Sciences Instrumentation 54 (2018) 167-175

Subject Terms: Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1901.03463

A Cascaded Deep Learning–Based Artificial Intelligence Algorithm for Automated Lesion Detection and Classification on Biparametric Prostate Magnetic Resonance Imaging

Authors: Mehralivand, Sherif, Yang, Dong, Harmon, Stephanie A., Xu, Daguang, Xu, Ziyue, Roth, Holger, Masoudi, Samira, Sanford, Thomas H., Kesani, Deepak, Lay, Nathan S., Merino, Maria J., Wood, Bradford J., Pinto, Peter A., Choyke, Peter L., Turkbey, Baris

Source: Academic radiology. 29(8):1159-1168

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167343819.0x000001&indx=1&recIds=ETOCvdc_100167343819.0x000001

Deep Learning Radiographic Assessment of Pulmonary Edema: Optimizing Clinical Performance, Training With Serum Biomarkers

Authors: Huynh, Justin, Masoudi, Samira, Noorbakhsh, Abraham, Mahmoodi, Amin, Kligerman, Seth, Yen, Andrew, Jacobs, Kathleen, Hahn, Lewis, Hasenstab, Kyle, Pazzani, Michael, Hsiao, Albert

Source: IEEE access. 10:48577-48588

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100149813217.0x000001&indx=1&recIds=ETOCvdc_100149813217.0x000001

High throughput assessment of biomarkers in tissue microarrays using artificial intelligence: PTEN loss as a proof-of-principle in multi-center prostate cancer cohorts

Authors: Harmon, Stephanie A., Patel, Palak G., Sanford, Thomas H., Caven, Isabelle, Iseman, Rachael, Vidotto, Thiago, Picanço, Clarissa, Squire, Jeremy A., Masoudi, Samira, Mehralivand, Sherif, Choyke, Peter L., Berman, David M., Turkbey, Baris, Jamaspishvili, Tamara

Source: In Modern Pathology February 2021 34(2):478-489

Deep Learning Based Staging of Bone Lesions From Computed Tomography Scans

Authors: Masoudi, Samira, Mehralivand, Sherif, Harmon, Stephanie A., Lay, Nathan, Lindenberg, Liza, Mena, Esther, Pinto, Peter A., Citrin, Deborah E., Gulley, James L., Wood, Bradford J., Dahut, William L., Madan, Ravi A., Bagci, Ulas, Choyke, Peter L., Turkbey, Baris

Source: IEEE access. 9:87531-87542

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100123005070.0x000001&indx=1&recIds=ETOCvdc_100123005070.0x000001

Evaluation of herbal extracts for apple virus eradication compared to chemotherapy and thermotherapy.

Authors: Masoudi, Samira, Hajnajari, Hassan, Soleimani, Ali, Kermani, Maryam Jafarkhani, Razaghi, Keyvan, Hosseini, Zahra Saadat

Source: European Journal of Plant Pathology; Dec2024, Vol. 170 Issue 4, p973-984, 12p

Optimizing Micropropagation of Apple (Malus × Domestica Borkh) and in Vitro Root Induction By Piriformospora indica

Authors: Masoudi Samira, Kermani Maryam Jafarkhani, Soleimani Ali, Hajnajari Hassan, Alidadi Amin, Hosseini Zahra Saadat

Source: Agriculture, Vol 66, Iss 4, Pp 137-147 (2020)

Subject Terms: apple cultivars, culture media, establishment, proliferation, Agriculture

File Description: electronic resource

Relation: https://doaj.org/toc/1338-4376

Access URL: https://doaj.org/article/c74441f9c77b47cf875dcf359dda63c4

Instance-Level Microtubule Tracking

Authors: Masoudi, Samira, Razi, Afsaneh, Wright, Cameron H. G., Gatlin, Jesse C., Bagci, Ulas

Source: IEEE transactions on medical imaging. 39(6):2061-2075

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100101799230.0x000001&indx=1&recIds=ETOCvdc_100101799230.0x000001

PD56-08 A DEEP LEARNING–BASED ALGORITHM FOR AUTOMATED DETECTION AND CLASSIFICATION OF PROSTATE LESIONS ON BIPARAMETRIC MAGNETIC RESONANCE IMAGING

Authors: Mehralivand, Sherif, Yang, Dong, Xu, Daguang, Xu, Ziyue, Roth, Holger, Harmon, Stephanie, Masoudi, Samira, Sanford, Thomas, Kesani, Deepak, Lay, Nathan, Wood, Bradford, Choyke, Peter, Pinto, Peter, Turkbey, Baris

Source: Journal of urology. 206(3):e1006-e1007

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185623727.0x000001&indx=1&recIds=ETOCvdc_100185623727.0x000001

PD40-05 DEEP LEARNING BASED ASSESSMENT OF PROSTATE LESION DYNAMICS ON MULTIPARAMETRIC MRI DURING ACTIVE SURVEILLANCE

Authors: Daneshvar, Michael, Harmon, Stephanie, Phelps, Tim, Rothberg, Michael, Enders, Jacob, Yerram, Nitin, O'Connor, Luke, Wang, Alex, Mehralivand, Sherif, Masoudi, Samira, Yang, Dong, Xu, Ziyue, Xu, Daguang, Merino, Maria, Wood, Bradford, Choyke, Peter, Pinto, Peter, Turkbey, Baris

Source: Journal of urology. 207(5):e685-e685

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165595159.0x000001&indx=1&recIds=ETOCvdc_100165595159.0x000001

PD10-03 DEEP LEARNING BASED ASSESSMENT OF PROSTATE LESION DYNAMICS ON MULTIPARAMETRIC MRI DURING ACTIVE SURVEILLANCE

Authors: Daneshvar, Michael, Harmon, Stephanie, Yerram, Nitin, O'Connor, Luke, Wang, Alex, Mehralivand, Sherif, Masoudi, Samira, Yang, Dong, Xu, Ziyue, Xu, Daguang, Merino, Maria, Wood, Brad, Choyke, Peter, Pinto, Peter, Turkbey, Ismail

Source: Journal of urology. 206(3):e127-e127

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185645529.0x000001&indx=1&recIds=ETOCvdc_100185645529.0x000001

Deep learning-based artificial intelligence for prostate cancer detection at biparametric MRI.

Authors: Mehralivand, Sherif, Yang, Dong, Harmon, Stephanie A., Xu, Daguang, Xu, Ziyue, Roth, Holger, Masoudi, Samira, Kesani, Deepak, Lay, Nathan, Merino, Maria J., Wood, Bradford J., Pinto, Peter A., Choyke, Peter L., Turkbey, Baris

Source: Abdominal Radiology; Apr2022, Vol. 47 Issue 4, p1425-1434, 10p

Subject Terms: DEEP learning, ARTIFICIAL intelligence, PROSTATE cancer, MAGNETIC resonance imaging, ALGORITHMS

Quick guide on radiology image pre-processing for deep learning applications in prostate cancer research.

Authors: Masoudi, Samira, Harmon, Stephanie A., Mehralivand, Sherif, Walker, Stephanie M., Raviprakash, Harish, Bagci, Ulas, Choyke, Peter L., Turkbey, Baris

Source: Journal of Medical Imaging; Jan/Feb2021, Vol. 8 Issue 1, p10901-10901, 1p

Quality of T2-weighted MRI re-acquisition versus deep learning GAN image reconstruction: A multi-reader study.

Authors: Belue, Mason J.¹ (AUTHOR), Harmon, Stephanie A.¹ (AUTHOR), Masoudi, Samira² (AUTHOR), Barrett, Tristan³ (AUTHOR), Law, Yan Mee⁴ (AUTHOR), Purysko, Andrei S.⁵ (AUTHOR), Panebianco, Valeria⁶ (AUTHOR), Yilmaz, Enis C.¹ (AUTHOR), Lin, Yue¹ (AUTHOR), Jadda, Pavan Kumar⁷ (AUTHOR), Raavi, Sitarama⁷ (AUTHOR), Wood, Bradford J.^8,9 (AUTHOR), Pinto, Peter A.¹⁰ (AUTHOR), Choyke, Peter L.¹ (AUTHOR), Turkbey, Baris¹ (AUTHOR) turkbeyi@mail.nih.gov

Source: European Journal of Radiology. Jan2024, Vol. 170, pN.PAG-N.PAG. 1p.

Subject Terms: *IMAGE reconstruction, *DEEP learning, *GENERATIVE adversarial networks, *MAGNETIC resonance imaging, *COMPUTATIONAL linguistics