Choosing an appropriate somatic embryogenesis medium of carrot (Daucus carota L.) by data mining technology

Authors: Masoumeh Fallah Ziarani, Masoud Tohidfar, Mohsen Hesami

Source: BMC Biotechnology, Vol 24, Iss 1, Pp 1-9 (2024)

Subject Terms: Artificial neural network, Genetic algorithm, In vitro culture, Machine learning, Multilayer perceptron, Radial basis function, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/1472-6750

Access URL: https://doaj.org/article/b352deb2356349eda6839afa9ac4b509

Co-overexpression of chitinase and β-1,3-glucanase significantly enhanced the resistance of Iranian wheat cultivars to Fusarium

Authors: Negin Mohammadizadeh-Heydari, Masoud Tohidfar, Bahram Maleki Zanjani, Motahhareh Mohsenpour, Rahele Ghanbari Moheb Seraj, Keyvan Esmaeilzadeh-Salestani

Source: BMC Biotechnology, Vol 24, Iss 1, Pp 1-12 (2024)

Subject Terms: Chitinase, β-1,3-glucanases, Biolistic method, Transgenic wheat, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/1472-6750

Access URL: https://doaj.org/article/926507ec59004931a0921f4ac4be70a1

Identification of responsive genes to multiple abiotic stresses in rice (Oryza sativa): a meta-analysis of transcriptomics data

Authors: Mahnaz Azad, Masoud Tohidfar, Rahele Ghanbari Moheb Seraj, Mohammad Mehralian, Keyvan Esmaeilzadeh-Salestani

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)

Subject Terms: Meta-analysis, Microarray, Rice, Environmental stresses, qRT-PCR, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/4ff617d901834b0282096afc770e798e

Differential gene expression (DGE) analysis in persons with a history of giardiasis

Authors: Parnia Saeedi, Gilda Eslami, Masoud Tohidfar, AbbasAli Jafari-Nodushan, Mahmood Vakili

Source: AMB Express, Vol 14, Iss 1, Pp 1-11 (2024)

Subject Terms: Giardia duodenalis, Cancer, Candidate genes, Differential gene expression, Biotechnology, TP248.13-248.65, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2191-0855

Access URL: https://doaj.org/article/435879e7aae0454bbf8b508a9b0db23a

Evaluation of antibacterial properties of nisin peptide expressed in carrots

Authors: Masoumeh Fallah Ziarani, Masoud Tohidfar, Mohammad Hossein Mirjalili

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-20 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/8ea3070680c54112915d78ce859b427e

Advanced stage, high-grade primary tumor ovarian cancer: a multi-omics dissection and biomarker prediction process

Authors: Yousof Saeedi Honar, Saleh Javaher, Marziye Soleimani, Amir Zarebkohan, Behrouz Farhadihosseinabadi, Masoud Tohidfar, Meghdad Abdollahpour-Alitappeh

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-15 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/6b9b291570644f679cc6cef77c3c2bd5

Comprehensive RNA-Seq-based study and metabolite profiling to identify genes involved in podophyllotoxin biosynthesis in Linum album Kotschy ex Boiss. (Linaceae)

Authors: Zahra Danaeipour, Ghasemali Garoosi, Masoud Tohidfar, Mohammad Reza Bakhtiarizadeh, Mohammad Hossein Mirjalili

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-15 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/1ace009149ea4675abf243a3c6582c07

A review on the application of hairy roots in removing phenolic compounds from aqueous solutions

Authors: Tahereh Ebrahimi, Khosro Piri, Asghar Abdoli, Masoud Tohidfar

Source: سلامت و محیط, Vol 16, Iss 1, Pp 175-194 (2023)

Subject Terms: hairy root, phenol compounds, phytoremediation, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://ijhe.tums.ac.ir/article-1-6763-en.pdf; https://doaj.org/toc/2008-2029; https://doaj.org/toc/2008-3718

Access URL: https://doaj.org/article/19d6df2b2ac94f1690eb7467d8bfac0c

Transcriptome profiling of barley in response to mineral and organic fertilizers

Authors: Keyvan Esmaeilzadeh-Salestani, Masoud Tohidfar, Rahele Ghanbari Moheb Seraj, Banafsheh Khaleghdoust, Indrek Keres, Hashem Marawne, Evelin Loit

Source: BMC Plant Biology, Vol 23, Iss 1, Pp 1-18 (2023)

Subject Terms: Barley, Organic, Conventional, Nitrogen, RNA-seq, Gene expression, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/57e5915e60a94144909741669812fd87

Modeling and optimizing in vitro percentage and speed callus induction of carrot via Multilayer Perceptron-Single point discrete GA and radial basis function

Authors: Masoumeh Fallah Ziarani, Masoud Tohidfar, Mohammad Navvabi

Source: BMC Biotechnology, Vol 22, Iss 1, Pp 1-12 (2022)

Subject Terms: Artificial neural network, Perceptron-Single point discrete GA model, Micropropagation, Carrot, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://doaj.org/toc/1472-6750

Access URL: https://doaj.org/article/4b8434f512974edd8b2ad9eb37a9622d

Metabolomics analysis of milk thistle lipids to identify drought-tolerant genes

Authors: Rahele Ghanbari Moheb Seraj, Masoud Tohidfar, Maryam Azimzadeh Irani, Keyvan Esmaeilzadeh-Salestani, Toktam Moradian, Asadollah Ahmadikhah, Mahdi Behnamian

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-23 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/27b5cbf466ed498a8e53cf43d3c58af6

Comparative analysis of different artificial neural networks for predicting and optimizing in vitro seed germination and sterilization of petunia.

Authors: Hamed Rezaei, Asghar Mirzaie-Asl, Mohammad Reza Abdollahi, Masoud Tohidfar

Source: PLoS ONE, Vol 18, Iss 5, p e0285657 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/d4ab0ee9a10041d3a8de1540a82bf337

Enhancing petunia tissue culture efficiency with machine learning: A pathway to improved callogenesis.

Authors: Hamed Rezaei, Asghar Mirzaie-Asl, Mohammad Reza Abdollahi, Masoud Tohidfar

Source: PLoS ONE, Vol 18, Iss 11, p e0293754 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0293754&type=printable; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/85558ef95caa4f96af3022c639e68b0e

A Bioinformatics Analysis of Antibacterial Peptides in Five Species of Prokaryote and Eukaryote and the Evaluation of Antibacterial Effects of Nisin on Gram-positive and Gram-negative Bacteria

Authors: Masoumeh Fallah ziarani, Masoud Tohidfar, Mohammad hosein Mirjalili, Hassan Ahmadi gavlighi

Source: Biological Journal of Microorganism, Vol 10, Iss 39, Pp 29-50 (2021)

Subject Terms: bioinformatic analysis, antibacterial peptides, eukaryote and prokaryote, allergen, inhibitory effects, Microbiology, QR1-502

File Description: electronic resource

Relation: https://bjm.ui.ac.ir/article_25173_665e9746b21057bf90ad96820a9a994b.pdf; https://doaj.org/toc/2322-5173; https://doaj.org/toc/2322-5181

Access URL: https://doaj.org/article/dfd7134325af4876a290c2602f44bc05

Plant regeneration and transformation of Trachyspermum ammi using Agrobacterium tumefaciens and zygotic embryos

Authors: Masoumeh Nomani, Masoud Tohidfar

Source: Journal of Genetic Engineering and Biotechnology, Vol 19, Iss 1, Pp 1-10 (2021)

Subject Terms: Plant growth regulators, HPLC, Zygotic embryo, Transgenic, PCR, Southern blot, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2090-5920

Access URL: https://doaj.org/article/7b623b2f399f4b74b404e24fb8161335

Development of support vector machine-based model and comparative analysis with artificial neural network for modeling the plant tissue culture procedures: effect of plant growth regulators on somatic embryogenesis of chrysanthemum, as a case study

Authors: Mohsen Hesami, Roohangiz Naderi, Masoud Tohidfar, Mohsen Yoosefzadeh-Najafabadi

Source: Plant Methods, Vol 16, Iss 1, Pp 1-15 (2020)

Subject Terms: Artificial intelligence, Support vector regression, Multi-objective optimization algorithm, Machine learning algorithms, Multilayer perceptron, Somatic embryogenesis, Plant culture, SB1-1110, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13007-020-00655-9; https://doaj.org/toc/1746-4811

Access URL: https://doaj.org/article/cb093b8bd2274b3b990dbde2c9ad3839

RNA-Seq Analysis of Magnaporthe grisea Transcriptome Reveals the High Potential of ZnO Nanoparticles as a Nanofungicide

Authors: Reza Ghamari, Asadollah Ahmadikhah, Masoud Tohidfar, Mohammad Reza Bakhtiarizadeh

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: zinc oxide, antifungal activity, RNA sequencing, nanobiofungicide, rice blast, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.896283/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/9a67eb11e974474284a4e79482895411

Podophyllotoxin Content Analysis of Linum album Kotschy ex Boiss. Subjected to Short-Term Potassium Deficiency Stress

Authors: Zahra Danaeipour, Ghasemali Garoosi, Masoud Tohidfar, Mohammad Reza Bakhtiarizadeh, Mohammad Hossein Mirjalili

Source: Medical Sciences Forum, Vol 14, Iss 1, p 115 (2022)

Subject Terms: Linum album, podophyllotoxin, anticancer, potassium deficiency, Medicine

File Description: electronic resource

Relation: https://www.mdpi.com/2673-9992/14/1/115; https://doaj.org/toc/2673-9992

Access URL: https://doaj.org/article/8ce4da2a075c4da4aa142256f6c94482

Betaine Aldehyde Dehydrogenase (BADH) vs. Flavodoxin (Fld): Two Important Genes for Enhancing Plants Stress Tolerance and Productivity

Authors: Mohsen Niazian, Seyed Ahmad Sadat-Noori, Masoud Tohidfar, Seyed Mohammad Mahdi Mortazavian, Paolo Sabbatini

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: compatible solutes, flavoproteins, glycine betaine, osmotic adjustment, photosynthetic electron transport chain, stress, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.650215/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/2b812661e8d04bdf8d590e26054e2df7

Molecular characteristic of treatment failure clinical isolates of Leishmania major

Authors: Gilda Eslami, Samira Hatefi, Vahid Ramezani, Masoud Tohidfar, Tatyana V. Churkina, Yuriy L. Orlov, Saeedeh Sadat Hosseini, Mohammad Javad Boozhmehrani, Mahmood Vakili

Source: PeerJ, Vol 9, p e10969 (2021)

Subject Terms: Leishmania, Parasitology, Leishmaniasis, Clinical isolates, Minicircle kDNA, COXII, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/10969.pdf; https://peerj.com/articles/10969/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/3c2df77a1432481c85aab05ea8ee8da0