Ensuring Adherence to Standards in Experiment-Related Metadata Entered Via Spreadsheets

Authors: Martin J. O’Connor, Josef Hardi, Marcos Martínez-Romero, Sowmya Somasundaram, Brendan Honick, Stephen A. Fisher, Ajay Pillai, Mark A. Musen

Source: Scientific Data, Vol 12, Iss 1, Pp 1-13 (2025)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/4b2a4ef033544bd486d85a089883207c

Modeling community standards for metadata as templates makes data FAIR

Authors: Mark A. Musen, Martin J. O’Connor, Erik Schultes, Marcos Martínez-Romero, Josef Hardi, John Graybeal

Source: Scientific Data, Vol 9, Iss 1, Pp 1-15 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/019fb43bfea2491093b368553bc23e99

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Authors: Marcos Martínez-Romero, Clement Jonquet, Martin J. O’Connor, John Graybeal, Alejandro Pazos, Mark A. Musen

Source: Journal of Biomedical Semantics, Vol 8, Iss 1, Pp 1-22 (2017)

Subject Terms: Ontology selection, Ontology recommendation, Ontology evaluation, Semantic Web, Biomedical ontologies, NCBO BioPortal, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13326-017-0128-y; https://doaj.org/toc/2041-1480

Access URL: https://doaj.org/article/1a04ba61ef024d26b9a781180c5406a1

The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories

Authors: Syed Ahmad Chan Bukhari, Martin J. O’Connor, Marcos Martínez-Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Florian Rubelt, Kei-Hoi Cheung, Steven H. Kleinstein

Source: Frontiers in Immunology, Vol 9 (2018)

Subject Terms: immune-repertoire sequencing, Rep-seq, antibody, B cell receptor, T cell receptor, National Center for Biotechnology Information, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fimmu.2018.01877/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/e28f95a5137843d3a78e695d29ec81b2