Equilibrium phases and phase transitions in multicritical magnetic polymers

Authors: Raiola, Alberto, Locatelli, Emanuele, Marenduzzo, Davide, Orlandini, and Enzo

Subject Terms: Condensed Matter - Soft Condensed Matter, Condensed Matter - Statistical Mechanics

Access URL: http://arxiv.org/abs/2503.05616

Bridging-Induced Phase Separation and Loop Extrusion Drive Noise in Chromatin Transcription

Authors: Chiang, Michael, Battaglia, Cleis, Forte, Giada, Brackley, Chris A., Gilbert, Nick, Marenduzzo, Davide

Subject Terms: Physics - Biological Physics

Access URL: http://arxiv.org/abs/2407.04907

Entangled nematic disclinations using multi-particle collision dynamics

Authors: Head, Louise C., Fosado, Yair A. G., Marenduzzo, Davide, Shendruk, Tyler N.

Subject Terms: Condensed Matter - Soft Condensed Matter

Access URL: http://arxiv.org/abs/2404.09368

Multiphase Field Model of Cells on a Substrate: From 3D to 2D

Authors: Chiang, Michael, Hopkins, Austin, Loewe, Benjamin, Marenduzzo, Davide, Marchetti, M. Cristina

Subject Terms: Condensed Matter - Soft Condensed Matter, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2403.10715

3D active nematic disclinations behave as Majorana quasiparticles

Authors: Head, Louise C., Negro, Giuseppe, Carenza, Livio N., Keogh, Ryan R., Gonnella, Giuseppe, Morozov, Alexander, Orlandini, Enzo, Shendruk, Tyler N., Tiribocchi, Adriano, Marenduzzo, Davide

Subject Terms: Condensed Matter - Soft Condensed Matter

Access URL: http://arxiv.org/abs/2402.16149

Controlling flow patterns and topology in active emulsions

Authors: Negro, Giuseppe, Head, Louise C., Carenza, Livio N., Shendruk, Tyler N., Marenduzzo, Davide, Gonnella, Giuseppe, Tiribocchi, Adriano

Subject Terms: Condensed Matter - Soft Condensed Matter

Access URL: http://arxiv.org/abs/2402.02960

Topological spectra and entropy of chromatin loop networks

Authors: Bonato, Andrea, Corbett, Dom, Kitaev, Sergey, Marenduzzo, Davide, Morozov, Alexander, Orlandini, Enzo

Subject Terms: Physics - Biological Physics, Condensed Matter - Soft Condensed Matter

Access URL: http://arxiv.org/abs/2312.12159

Combinatorics and topological weights of chromatin loop networks

Authors: Bonato, Andrea, Corbett, Dom, Kitaev, Sergey, Marenduzzo, Davide, Morozov, Alexander, Orlandini, Enzo

Subject Terms: Physics - Biological Physics

Access URL: http://arxiv.org/abs/2312.12154

Diffusive evaporation dynamics in polymer solutions is ubiquitous

Authors: Huisman, Max, Poon, Wilson C. K., Warren, Patrick B., Titmuss, Simon, Marenduzzo, Davide

Source: Soft Matter 21 (8), 1508-1515 - Published 19/02/2025

Subject Terms: Condensed Matter - Soft Condensed Matter

Access URL: http://arxiv.org/abs/2311.16911

Intercellular Friction and Motility Drive Orientational Order in Cell Monolayers

Authors: Chiang, Michael, Hopkins, Austin, Loewe, Benjamin, Marchetti, M. Cristina, Marenduzzo, Davide

Subject Terms: Condensed Matter - Soft Condensed Matter, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2310.20465

Motility induced phase separation of deformable cells

Authors: Hopkins, Austin, Loewe, Benjamin, Chiang, Michael, Marenduzzo, Davide, Marchetti, M. Cristina

Subject Terms: Condensed Matter - Soft Condensed Matter, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2308.05088

A unified-field theory of genome organization and gene regulation

Authors: Negro, Giuseppe, Semeraro, Massimiliano, Cook, Perter R, Marenduzzo, Davide

Source: Iscience, Volume 27, Issue 12111218December 20, 2024

Subject Terms: Physics - Biological Physics, Condensed Matter - Soft Condensed Matter, Condensed Matter - Statistical Mechanics

Access URL: http://arxiv.org/abs/2308.02861

Cluster size determines morphology of transcription factories in human cells

Authors: Semeraro, Massimiliano, Negro, Giuseppe, Forte, Giada, Suma, Antonio, Gonnella, Giuseppe, Cook, Peter R., Marenduzzo, Davide

Subject Terms: Physics - Biological Physics

Access URL: http://arxiv.org/abs/2301.06386

3D polymer simulations of genome organization and transcription across different chromosomes and cell types

Authors: Semeraro, Massimiliano, Negro, Giuseppe, Suma, Antonio, Gonnella, Giuseppe, Marenduzzo, Davide

Subject Terms: Condensed Matter - Soft Condensed Matter, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2211.12342

Topological Phases and Curvature-Driven Pattern Formation in Cholesteric Shells

Authors: Negro, Giuseppe, Carenza, Livio Nicola, Gonnella, Giuseppe, Marenduzzo, Davide, Orlandini, Enzo

Subject Terms: Condensed Matter - Soft Condensed Matter, Condensed Matter - Materials Science, Condensed Matter - Other Condensed Matter

Access URL: http://arxiv.org/abs/2210.04877

Topological epigenetics: The biophysics of DNA supercoiling and its relation to transcription and genome instability

Authors: Gilbert, Nick ^{1, ⁎}, Marenduzzo, Davide ^{2, ⁎⁎}

Source: In Current Opinion in Cell Biology February 2025 92

Active turbulence and spontaneous phase separation in inhomogeneous extensile active gels

Authors: Assante, Renato, Corbett, Dom, Marenduzzo, Davide, Morozov, Alexander

Source: Soft Matter, 2023, 19, 189-198

Subject Terms: Condensed Matter - Soft Condensed Matter, Physics - Fluid Dynamics

Access URL: http://arxiv.org/abs/2209.01869

Shapes and dynamic regimes of a polar active fluid droplet under confinement

Authors: Tiribocchi, Adriano, Durve, Mihir, Lauricella, Marco, Montessori, Andrea, Marenduzzo, Davide, Succi, Sauro

Subject Terms: Condensed Matter - Soft Condensed Matter, Physics - Fluid Dynamics

Access URL: http://arxiv.org/abs/2208.08163

Yield-stress transition in suspensions of deformable droplets

Authors: Negro, Giuseppe, Carenza, Livio Nicola, Gonnella, Giuseppe, Mackay, Fraser, Morozov, Alexander, Marenduzzo, Davide

Source: Sci. Adv.9,eadf8106(2023)

Subject Terms: Condensed Matter - Soft Condensed Matter

Access URL: http://arxiv.org/abs/2203.04591

Yield Stress and Compliance in Active Cell Monolayers

Authors: Hopkins, Austin, Chiang, Michael, Loewe, Benjamin, Marenduzzo, Davide, Marchetti, M. Cristina

Subject Terms: Condensed Matter - Soft Condensed Matter, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2203.02071