Crystal structure of a bacterial photoactivated adenylate cyclase determined by serial femtosecond and serial synchrotron crystallography

Authors: Sofia M. Kapetanaki, Nicolas Coquelle, David von Stetten, Martin Byrdin, Ronald Rios-Santacruz, Richard Bean, Johan Bielecki, Mohamed Boudjelida, Zsuzsana Fekete, Geoffrey W. Grime, Huijong Han, Caitlin Hatton, Sravya Kantamneni, Konstantin Kharitonov, Chan Kim, Marco Kloos, Faisal H. M. Koua, Iñaki de Diego Martinez, Diogo Melo, Lukas Rane, Adam Round, Ekaterina Round, Abhisakh Sarma, Robin Schubert, Joachim Schulz, Marcin Sikorski, Mohammad Vakili, Joana Valerio, Jovana Vitas, Raphael de Wijn, Agnieszka Wrona, Ninon Zala, Arwen Pearson, Katerina Dörner, Giorgio Schirò, Elspeth F. Garman, András Lukács, Martin Weik

Source: IUCrJ, Vol 11, Iss 6, Pp 991-1006 (2024)

Subject Terms: bacterial adenylate cyclase, bluf domain, ac domain, serial femtosecond crystallography, xfels, synchrotrons, room-temperature x-ray crystallography, cryo-macromolecular crystallography, protein structure, light-activated enzymes, oscillatoria acuminata, Crystallography, QD901-999

File Description: electronic resource

Relation: https://journals.iucr.org/paper?S2052252524010170; https://doaj.org/toc/2052-2525

Access URL: https://doaj.org/article/f5172cd8b2a24e84967c8f4cf03b38f8

SARS-CoV-2 Mpro responds to oxidation by forming disulfide and NOS/SONOS bonds

Authors: Patrick Y. A. Reinke, Robin Schubert, Dominik Oberthür, Marina Galchenkova, Aida Rahmani Mashhour, Sebastian Günther, Anaïs Chretien, Adam Round, Brandon Charles Seychell, Brenna Norton-Baker, Chan Kim, Christina Schmidt, Faisal H. M. Koua, Alexandra Tolstikova, Wiebke Ewert, Gisel Esperanza Peña Murillo, Grant Mills, Henry Kirkwood, Hévila Brognaro, Huijong Han, Jayanath Koliyadu, Joachim Schulz, Johan Bielecki, Julia Lieske, Julia Maracke, Juraj Knoska, Kristina Lorenzen, Lea Brings, Marcin Sikorski, Marco Kloos, Mohammad Vakili, Patrik Vagovic, Philipp Middendorf, Raphael de Wijn, Richard Bean, Romain Letrun, Seonghyun Han, Sven Falke, Tian Geng, Tokushi Sato, Vasundara Srinivasan, Yoonhee Kim, Oleksandr M. Yefanov, Luca Gelisio, Tobias Beck, Andrew S. Doré, Adrian P. Mancuso, Christian Betzel, Saša Bajt, Lars Redecke, Henry N. Chapman, Alke Meents, Dušan Turk, Winfried Hinrichs, Thomas J. Lane

Source: Nature Communications, Vol 15, Iss 1, Pp 1-10 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7a737b71ae764265a7f11a3df650ea0b

3D-printed sheet jet for stable megahertz liquid sample delivery at X-ray free-electron lasers

Authors: Patrick E. Konold, Tong You, Johan Bielecki, Joana Valerio, Marco Kloos, Daniel Westphal, Alfredo Bellisario, Tej Varma Yenupuri, August Wollter, Jayanath C. P. Koliyadu, Faisal H.M. Koua, Romain Letrun, Adam Round, Tokushi Sato, Petra Mészáros, Leonardo Monrroy, Jennifer Mutisya, Szabolcs Bódizs, Taru Larkiala, Amke Nimmrich, Roberto Alvarez, Patrick Adams, Richard Bean, Tomas Ekeberg, Richard A. Kirian, Andrew V. Martin, Sebastian Westenhoff, Filipe R. N. C. Maia

Source: IUCrJ, Vol 10, Iss 6, Pp 662-670 (2023)

Subject Terms: free-electron lasers, injectors, single particles, fast sax, time-resolved studies, fast wax, sample delivery, xfels, Crystallography, QD901-999

File Description: electronic resource

Relation: http://scripts.iucr.org/cgi-bin/paper?S2052252523007972; https://doaj.org/toc/2052-2525

Access URL: https://doaj.org/article/fa25df8b41a2470ca3b53093fe9cc51e

Form factor determination of biological molecules with X-ray free electron laser small-angle scattering (XFEL-SAS)

Authors: Clement E. Blanchet, Adam Round, Haydyn D. T. Mertens, Kartik Ayyer, Melissa Graewert, Salah Awel, Daniel Franke, Katerina Dörner, Saša Bajt, Richard Bean, Tânia F. Custódio, Raphael de Wijn, E. Juncheng, Alessandra Henkel, Andrey Gruzinov, Cy M. Jeffries, Yoonhee Kim, Henry Kirkwood, Marco Kloos, Juraj Knoška, Jayanath Koliyadu, Romain Letrun, Christian Löw, Jana Makroczyova, Abhishek Mall, Rob Meijers, Gisel Esperanza Pena Murillo, Dominik Oberthür, Ekaterina Round, Carolin Seuring, Marcin Sikorski, Patrik Vagovic, Joana Valerio, Tamme Wollweber, Yulong Zhuang, Joachim Schulz, Heinrich Haas, Henry N. Chapman, Adrian P. Mancuso, Dmitri Svergun

Source: Communications Biology, Vol 6, Iss 1, Pp 1-11 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/bcf514c39af3436883cc2c8e5bf81aab

De novo determination of mosquitocidal Cry11Aa and Cry11Ba structures from naturally-occurring nanocrystals

Authors: Guillaume Tetreau, Michael R. Sawaya, Elke De Zitter, Elena A. Andreeva, Anne-Sophie Banneville, Natalie A. Schibrowsky, Nicolas Coquelle, Aaron S. Brewster, Marie Luise Grünbein, Gabriela Nass Kovacs, Mark S. Hunter, Marco Kloos, Raymond G. Sierra, Giorgio Schiro, Pei Qiao, Myriam Stricker, Dennis Bideshi, Iris D. Young, Ninon Zala, Sylvain Engilberge, Alexander Gorel, Luca Signor, Jean-Marie Teulon, Mario Hilpert, Lutz Foucar, Johan Bielecki, Richard Bean, Raphael de Wijn, Tokushi Sato, Henry Kirkwood, Romain Letrun, Alexander Batyuk, Irina Snigireva, Daphna Fenel, Robin Schubert, Ethan J. Canfield, Mario M. Alba, Frédéric Laporte, Laurence Després, Maria Bacia, Amandine Roux, Christian Chapelle, François Riobé, Olivier Maury, Wai Li Ling, Sébastien Boutet, Adrian Mancuso, Irina Gutsche, Eric Girard, Thomas R. M. Barends, Jean-Luc Pellequer, Hyun-Woo Park, Arthur D. Laganowsky, Jose Rodriguez, Manfred Burghammer, Robert L. Shoeman, R. Bruce Doak, Martin Weik, Nicholas K. Sauter, Brian Federici, Duilio Cascio, Ilme Schlichting, Jacques-Philippe Colletier

Source: Nature Communications, Vol 13, Iss 1, Pp 1-18 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/8dead0f985474ca8a66f02736c28391a

A multi-million image Serial Femtosecond Crystallography dataset collected at the European XFEL

Authors: Henry J. Kirkwood, Raphael de Wijn, Grant Mills, Romain Letrun, Marco Kloos, Mohammad Vakili, Mikhail Karnevskiy, Karim Ahmed, Richard J. Bean, Johan Bielecki, Fabio Dall’Antonia, Yoonhee Kim, Chan Kim, Jayanath Koliyadu, Adam Round, Tokushi Sato, Marcin Sikorski, Patrik Vagovič, Jolanta Sztuk-Dambietz, Adrian P. Mancuso

Source: Scientific Data, Vol 9, Iss 1, Pp 1-7 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/473b9ef644bc40ea8bbbdd5f108a3fb1

3D printed devices and infrastructure for liquid sample delivery at the European XFEL

Authors: Mohammad Vakili, Johan Bielecki, Juraj Knoška, Florian Otte, Huijong Han, Marco Kloos, Robin Schubert, Elisa Delmas, Grant Mills, Raphael de Wijn, Romain Letrun, Simon Dold, Richard Bean, Adam Round, Yoonhee Kim, Frederico A. Lima, Katerina Dörner, Joana Valerio, Michael Heymann, Adrian P. Mancuso, Joachim Schulz

Source: Journal of Synchrotron Radiation, Vol 29, Iss 2, Pp 331-346 (2022)

Subject Terms: fel physics, instrumentation, microfluidics, liquid jets, high-viscosity extrusion, aerosols, rapid mixing, sample delivery, x-ray scattering, crystallography, single-particle imaging, Nuclear and particle physics. Atomic energy. Radioactivity, QC770-798, Crystallography, QD901-999

File Description: electronic resource

Relation: http://scripts.iucr.org/cgi-bin/paper?S1600577521013370; https://doaj.org/toc/1600-5775

Access URL: https://doaj.org/article/fdd7206bbae24633bdd7ea8336a29b2e

Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography

Authors: Suraj Pandey, George Calvey, Andrea M. Katz, Tek Narsingh Malla, Faisal H. M. Koua, Jose M. Martin-Garcia, Ishwor Poudyal, Jay-How Yang, Mohammad Vakili, Oleksandr Yefanov, Kara A. Zielinski, Sasa Bajt, Salah Awel, Katarina Doerner, Matthias Frank, Luca Gelisio, Rebecca Jernigan, Henry Kirkwood, Marco Kloos, Jayanath Koliyadu, Valerio Mariani, Mitchell D. Miller, Grant Mills, Garrett Nelson, Jose L. Olmos Jr, Alireza Sadri, Tokushi Sato, Alexandra Tolstikova, Weijun Xu, Abbas Ourmazd, John C. H. Spence, Peter Schwander, Anton Barty, Henry N. Chapman, Petra Fromme, Adrian P. Mancuso, George N. Phillips Jr, Richard Bean, Lois Pollack, Marius Schmidt

Source: IUCrJ, Vol 8, Iss 6, Pp 878-895 (2021)

Subject Terms: substrate diffusion in crystals, antibiotic resistance, β-lactamases, enzyme kinetics, irreversible inhibition, mix-and-inject serial crystallography, serial femtosecond crystallography, european x-ray free-electron laser, megahertz pulse-repetition rate, protein structure determination, drug discovery, ceftriaxone, sulbactam, x-ray crystallography, enzyme mechanisms, Crystallography, QD901-999

File Description: electronic resource

Relation: http://scripts.iucr.org/cgi-bin/paper?S2052252521008125; https://doaj.org/toc/2052-2525

Access URL: https://doaj.org/article/fbdbd2a5c401447a974071c858ead28e

Effect of X-ray free-electron laser-induced shockwaves on haemoglobin microcrystals delivered in a liquid jet

Authors: Marie Luise Grünbein, Alexander Gorel, Lutz Foucar, Sergio Carbajo, William Colocho, Sasha Gilevich, Elisabeth Hartmann, Mario Hilpert, Mark Hunter, Marco Kloos, Jason E. Koglin, Thomas J. Lane, Jim Lewandowski, Alberto Lutman, Karol Nass, Gabriela Nass Kovacs, Christopher M. Roome, John Sheppard, Robert L. Shoeman, Miriam Stricker, Tim van Driel, Sharon Vetter, R. Bruce Doak, Sébastien Boutet, Andrew Aquila, Franz Josef Decker, Thomas R. M. Barends, Claudiu Andrei Stan, Ilme Schlichting

Source: Nature Communications, Vol 12, Iss 1, Pp 1-11 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/b9fa088215e4467aa2714fbb4e537fb1

Structural dynamics in proteins induced by and probed with X-ray free-electron laser pulses

Authors: Karol Nass, Alexander Gorel, Malik M. Abdullah, Andrew V. Martin, Marco Kloos, Agostino Marinelli, Andrew Aquila, Thomas R. M. Barends, Franz-Josef Decker, R. Bruce Doak, Lutz Foucar, Elisabeth Hartmann, Mario Hilpert, Mark S. Hunter, Zoltan Jurek, Jason E. Koglin, Alexander Kozlov, Alberto A. Lutman, Gabriela Nass Kovacs, Christopher M. Roome, Robert L. Shoeman, Robin Santra, Harry M. Quiney, Beata Ziaja, Sébastien Boutet, Ilme Schlichting

Source: Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/9afb811b5338411fb4f4557becfc7546

Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin

Authors: Gabriela Nass Kovacs, Jacques-Philippe Colletier, Marie Luise Grünbein, Yang Yang, Till Stensitzki, Alexander Batyuk, Sergio Carbajo, R. Bruce Doak, David Ehrenberg, Lutz Foucar, Raphael Gasper, Alexander Gorel, Mario Hilpert, Marco Kloos, Jason E. Koglin, Jochen Reinstein, Christopher M. Roome, Ramona Schlesinger, Matthew Seaberg, Robert L. Shoeman, Miriam Stricker, Sébastien Boutet, Stefan Haacke, Joachim Heberle, Karsten Heyne, Tatiana Domratcheva, Thomas R. M. Barends, Ilme Schlichting

Source: Nature Communications, Vol 10, Iss 1, Pp 1-17 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/a086ef8dd24c43efbb5f1448e1c960cf

Megahertz data collection from protein microcrystals at an X-ray free-electron laser

Authors: Marie Luise Grünbein, Johan Bielecki, Alexander Gorel, Miriam Stricker, Richard Bean, Marco Cammarata, Katerina Dörner, Lars Fröhlich, Elisabeth Hartmann, Steffen Hauf, Mario Hilpert, Yoonhee Kim, Marco Kloos, Romain Letrun, Marc Messerschmidt, Grant Mills, Gabriela Nass Kovacs, Marco Ramilli, Christopher M. Roome, Tokushi Sato, Matthias Scholz, Michel Sliwa, Jolanta Sztuk-Dambietz, Martin Weik, Britta Weinhausen, Nasser Al-Qudami, Djelloul Boukhelef, Sandor Brockhauser, Wajid Ehsan, Moritz Emons, Sergey Esenov, Hans Fangohr, Alexander Kaukher, Thomas Kluyver, Max Lederer, Luis Maia, Maurizio Manetti, Thomas Michelat, Astrid Münnich, Florent Pallas, Guido Palmer, Gianpietro Previtali, Natascha Raab, Alessandro Silenzi, Janusz Szuba, Sandhya Venkatesan, Krzysztof Wrona, Jun Zhu, R. Bruce Doak, Robert L. Shoeman, Lutz Foucar, Jacques-Philippe Colletier, Adrian P. Mancuso, Thomas R. M. Barends, Claudiu A. Stan, Ilme Schlichting

Source: Nature Communications, Vol 9, Iss 1, Pp 1-9 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/473d514376484a52977674b25aeaab4e

Multi-wavelength anomalous diffraction de novo phasing using a two-colour X-ray free-electron laser with wide tunability

Authors: Alexander Gorel, Koji Motomura, Hironobu Fukuzawa, R. Bruce Doak, Marie Luise Grünbein, Mario Hilpert, Ichiro Inoue, Marco Kloos, Gabriela Kovácsová, Eriko Nango, Karol Nass, Christopher M. Roome, Robert L. Shoeman, Rie Tanaka, Kensuke Tono, Yasumasa Joti, Makina Yabashi, So Iwata, Lutz Foucar, Kiyoshi Ueda, Thomas R. M. Barends, Ilme Schlichting

Source: Nature Communications, Vol 8, Iss 1, Pp 1-8 (2017)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/44d615b724fa4a20b4208d2dc0106a3d

Viscous hydrophilic injection matrices for serial crystallography

Authors: Gabriela Kovácsová, Marie Luise Grünbein, Marco Kloos, Thomas R. M. Barends, Ramona Schlesinger, Joachim Heberle, Wolfgang Kabsch, Robert L. Shoeman, R. Bruce Doak, Ilme Schlichting

Source: IUCrJ, Vol 4, Iss 4, Pp 400-410 (2017)

Subject Terms: high-throughput serial crystallography, room-temperature crystallography, microcrystal injection, XFEL, high-viscosity extrusion, Crystallography, QD901-999

File Description: electronic resource

Relation: http://scripts.iucr.org/cgi-bin/paper?S2052252517005140; https://doaj.org/toc/2052-2525

Access URL: https://doaj.org/article/6328d4fa858149478ab0c0ff8fb3de4a

Observation of shock-induced protein crystal damage during megahertz serial femtosecond crystallography

Authors: Marie L. Grünbein, Lutz Foucar, Alexander Gorel, Mario Hilpert, Marco Kloos, Karol Nass, Gabriela Nass Kovacs, Christopher M. Roome, Robert L. Shoeman, Miriam Stricker, Sergio Carbajo, William Colocho, Sasha Gilevich, Mark Hunter, Jim Lewandowski, Alberto Lutman, Jason E. Koglin, Thomas J. Lane, Tim van Driel, John Sheppard, Sharon L. Vetter, James L. Turner, R. Bruce Doak, Thomas R. M. Barends, Sébastien Boutet, Andrew L. Aquila, Franz-Josef Decker, Ilme Schlichting, Claudiu A. Stan

Source: Physical Review Research, Vol 3, Iss 1, p 013046 (2021)

Subject Terms: Physics, QC1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2643-1564

Access URL: https://doaj.org/article/8b27b095f6c64f77b4ffba5cf65f1a7b

Shock Damage Analysis in Serial Femtosecond Crystallography Data Collected at MHz X-ray Free-Electron Lasers

Authors: Alexander Gorel, Marie Luise Grünbein, Richard Bean, Johan Bielecki, Mario Hilpert, Michele Cascella, Jacques-Philippe Colletier, Hans Fangohr, Lutz Foucar, Elisabeth Hartmann, Mark S. Hunter, Henry Kirkwood, Marco Kloos, Romain Letrun, Thomas Michelat, Robert L. Shoeman, Jolanta Sztuk-Dambietz, Guillaume Tetreau, Herbert Zimmermann, Adrian P. Mancuso, Thomas R.M. Barends, R. Bruce Doak, Claudiu Andrei Stan, Ilme Schlichting

Source: Crystals, Vol 10, Iss 12, p 1145 (2020)

Subject Terms: X-ray free-electron laser, serial femtosecond crystallography, shock wave, protein crystallography, Crystallography, QD901-999

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4352/10/12/1145; https://doaj.org/toc/2073-4352

Access URL: https://doaj.org/article/fd9e1d338b5347578e33696daddf4656