Soybean genomics research community strategic plan: A vision for 2024–2028

Authors: Robert M. Stupar, Anna M. Locke, Doug K. Allen, Minviluz G. Stacey, Jianxin Ma, Jackie Weiss, Rex T. Nelson, Matthew E. Hudson, Trupti Joshi, Zenglu Li, Qijian Song, Joseph R. Jedlicka, Gustavo C. MacIntosh, David Grant, Wayne A. Parrott, Tom E. Clemente, Gary Stacey, Yong‐qiang Charles An, Jose Aponte‐Rivera, Madan K. Bhattacharyya, Ivan Baxter, Kristin D. Bilyeu, Jacqueline D. Campbell, Steven B. Cannon, Steven J. Clough, Shaun J. Curtin, Brian W. Diers, Anne E. Dorrance, Jason D. Gillman, George L. Graef, C. Nathan Hancock, Karen A. Hudson, David L. Hyten, Aardra Kachroo, Jenny Koebernick, Marc Libault, Aaron J. Lorenz, Adam L. Mahan, Jon M. Massman, Michaela McGinn, Khalid Meksem, Jack K. Okamuro, Kerry F. Pedley, Katy Martin Rainey, Andrew M. Scaboo, Jeremy Schmutz, Bao‐Hua Song, Adam D. Steinbrenner, Benjamin B. Stewart‐Brown, Katalin Toth, Dechun Wang, Lisa Weaver, Bo Zhang, Michelle A. Graham, Jamie A. O'Rourke

Source: The Plant Genome, Vol 17, Iss 4, Pp n/a-n/a (2024)

Subject Terms: Plant culture, SB1-1110, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1940-3372

Access URL: https://doaj.org/article/08dfc7cb8a48474ea726ace4880170df

Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research

Authors: Muskan Kapoor, Enrique Sapena Ventura, Amy Walsh, Alexey Sokolov, Nancy George, Sunita Kumari, Nicholas J. Provart, Benjamin Cole, Marc Libault, Timothy Tickle, Wesley C. Warren, James E. Koltes, Irene Papatheodorou, Doreen Ware, Peter W. Harrison, Christine Elsik, Galabina Yordanova, Tony Burdett, Christopher K. Tuggle

Source: Frontiers in Genetics, Vol 15 (2024)

Subject Terms: single-cell RNA-seq, metadata, HCA data portal, data ingestion portal, FAANG, data submission standards, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2024.1460351/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/133bd036ce5c49aa9b32e0629a9046ce

A strategy for identification and characterization of genic mutations using a temperature‐sensitive chlorotic soybean mutant as an example

Authors: C. Nathan Hancock, Tetandianocee Germany, Priscilla Redd, Jack Timmons, Jeffery Lipford, Samantha Burns, Sergio Alan Cervantes‐Perez, Marc Libault, Wenhao Shen, Yong‐qiang Charles An, Lisa Kanizay, Melinda Yerka, Wayne A. Parrott

Source: Plant Direct, Vol 8, Iss 11, Pp n/a-n/a (2024)

Subject Terms: chloroplast, genome resequencing, mutation, oxidoreductase, virescent, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/2475-4455

Access URL: https://doaj.org/article/637170f46ea34dad81aa4a45db4d8ebc

Editorial: Cellular heterogeneity in plants

Authors: Kengo Morohashi, Amir H. Ahkami, Jeremy E. Coate, Marc Libault

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: cellular heterogeneity, cell types, cell states, development, biotic and abiotic stress, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1417460/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/ea33d2f7bf3042d28d7d25e18631ce3f

The evolving definition of plant cell type

Authors: Sahand Amini, Jeffrey J. Doyle, Marc Libault

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: cell type, cell state, cell transition, cellular heterogeneity, single-cell technology, cell lineage, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1271070/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/2fc476729df34ca18b411277ad6de350

Editorial: New insights into mechanisms of epigenetic modifiers in plant growth and development, volume II

Authors: Ming Luo, Tomasz Jacek Sarnowski, Marc Libault, Gabino Ríos, Jean-Benoit Charron, Nitin Mantri, Shoudong Zhang

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: epigenetic, histone modification, DNA methyaltion, RNA, plant growth, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1213511/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/8e5069772ce044b3b3162d45c5ffe7c5

First Plant Cell Atlas symposium report

Authors: Selena L. Rice, Elena Lazarus, Christopher Anderton, Kenneth Birnbaum, Jennifer Brophy, Benjamin Cole, Diane Dickel, David Ehrhardt, Noah Fahlgren, Margaret Frank, Elizabeth Haswell, Shao‐shan Carol Huang, Samuel Leiboff, Marc Libault, Marisa S. Otegui, Nicholas Provart, R. Glen Uhrig, Seung Y. Rhee, The Plant Cell Atlas Consortium

Source: Plant Direct, Vol 6, Iss 6, Pp n/a-n/a (2022)

Subject Terms: data science, live imaging, plant cell atlas, proteomics, single‐cell sequencing, spatial transcriptomics, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/2475-4455

Access URL: https://doaj.org/article/ba749e52e5284348aa42eeff04a7cd84

Isolating and cryopreserving pig skin cells for single-cell RNA sequencing study

Authors: Li Han, Carlos P. Jara, Ou Wang, Yu Shi, Xinran Wu, Sandra Thibivilliers, Rafał K. Wóycicki, Mark A. Carlson, William H. Velander, Eliana P. Araújo, Marc Libault, Chi Zhang, Yuguo Lei

Source: PLoS ONE, Vol 17, Iss 2 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8853494/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/9b3774befa5d4332a4fed95f026d568f

Isolation of Plant Nuclei Compatible with Microfluidic Single-nucleus ATAC-sequencing

Authors: Sandra Thibivilliers, Dirk Anderson, Marc Libault

Source: Bio-Protocol, Vol 11, Iss 23 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://bio-protocol.org/en/bpdetail?id=4240&type=0; https://doaj.org/toc/2331-8325

Access URL: https://doaj.org/article/6ce68b68f9ab4deaa22a186d6804bba4

Vision, challenges and opportunities for a Plant Cell Atlas

Authors: Plant Cell Atlas Consortium, Suryatapa Ghosh Jha, Alexander T Borowsky, Benjamin J Cole, Noah Fahlgren, Andrew Farmer, Shao-shan Carol Huang, Purva Karia, Marc Libault, Nicholas J Provart, Selena L Rice, Maite Saura-Sanchez, Pinky Agarwal, Amir H Ahkami, Christopher R Anderton, Steven P Briggs, Jennifer AN Brophy, Peter Denolf, Luigi F Di Costanzo, Moises Exposito-Alonso, Stefania Giacomello, Fabio Gomez-Cano, Kerstin Kaufmann, Dae Kwan Ko, Sagar Kumar, Andrey V Malkovskiy, Naomi Nakayama, Toshihiro Obata, Marisa S Otegui, Gergo Palfalvi, Elsa H Quezada-Rodríguez, Rajveer Singh, R Glen Uhrig, Jamie Waese, Klaas Van Wijk, R Clay Wright, David W Ehrhardt, Kenneth D Birnbaum, Seung Y Rhee

Source: eLife, Vol 10 (2021)

Subject Terms: location-to-function, Plant Cell Atlas, translational research, 4D imaging, single-cell omics, science forum, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/66877; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/ec5bec0044f24450ace1f74df430f9ce

Enhancing Our Understanding of Plant Cell-to-Cell Interactions Using Single-Cell Omics

Authors: Sandra Thibivilliers, Marc Libault

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: transcriptomics, single-cell omics, multi-omics analyses, spatial transcriptomics, cell-to-cell interactions, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.696811/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/82c235ae18bb4768b2c1475ae6d241fe

Cell-Type-Specific Profiling of the Arabidopsis thaliana Membrane Protein-Encoding Genes

Authors: Sergio Alan Cervantes-Pérez, Marc Libault

Source: Membranes, Vol 12, Iss 9, p 874 (2022)

Subject Terms: Arabidopsis thaliana, plasma membrane proteins, single-cell transcriptomic, root cells, Chemical technology, TP1-1185, Chemical engineering, TP155-156

File Description: electronic resource

Relation: https://www.mdpi.com/2077-0375/12/9/874; https://doaj.org/toc/2077-0375

Access URL: https://doaj.org/article/5dd0e15229a940648edb360742ca253d

Editorial: New Insights Into Mechanisms of Epigenetic Modifiers in Plant Growth and Development

Authors: Ming Luo, Gabino Ríos, Tomasz Jacek Sarnowski, Shoudong Zhang, Nitin Mantri, Jean-Benoit Charron, Marc Libault

Source: Frontiers in Plant Science, Vol 10 (2020)

Subject Terms: epigenetic regulation, plant development, histone modification, chromatin modification, DNA methylation, small RNAs, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2019.01661/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/1757dccc3704451cbc81c9cd08a53d9b

Transcriptional Reprogramming of Legume Genomes: Perspective and Challenges Associated With Single-Cell and Single Cell-Type Approaches During Nodule Development

Authors: Marc Libault

Source: Frontiers in Plant Science, Vol 9 (2018)

Subject Terms: legume, nodulation, root hair, single cell-type single-cell, transcriptome, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2018.01600/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/d4489de08f844b03a9b4cfdbc025a4f4

Biological and Cellular Functions of the Microdomain-Associated FWL/CNR Protein Family in Plants

Authors: Sandra Thibivilliers, Andrew Farmer, Marc Libault

Source: Plants, Vol 9, Iss 3, p 377 (2020)

Subject Terms: fwl/cnd, microdomains, plasma membrane, legume nodulation, plant development, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/9/3/377; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/9af1f2d88a2240df88e551fd0a9f1a0e

miR172 Regulates Soybean Nodulation

Authors: Zhe Yan, Md Shakhawat Hossain, Jun Wang, Oswaldo Valdés-López, Yan Liang, Marc Libault, Lijuan Qiu, Gary Stacey

Source: Molecular Plant-Microbe Interactions, Vol 26, Iss 12, Pp 1371-1377 (2013)

Subject Terms: Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/2314f7681d3541d78d7993255534c65c

A Dual-Targeted Soybean Protein Is Involved in Bradyrhizobium japonicum Infection of Soybean Root Hair and Cortical Cells

Authors: Marc Libault, Manjula Govindarajulu, R. Howard Berg, Yee Tsuey Ong, Kari Puricelli, Christopher G. Taylor, Dong Xu, Gary Stacey

Source: Molecular Plant-Microbe Interactions, Vol 24, Iss 9, Pp 1051-1060 (2011)

Subject Terms: Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/a33aa0b9c5304e7d8e3e4290cd5d17a9

Transcription Profiling of Soybean Nodulation by Bradyrhizobium japonicum

Authors: Laurent Brechenmacher, Moon-Young Kim, Marisol Benitez, Min Li, Trupti Joshi, Bernarda Calla, Mei Phing Lee, Marc Libault, Lila O. Vodkin, Dong Xu, Suk-Ha Lee, Steven J. Clough, Gary Stacey

Source: Molecular Plant-Microbe Interactions, Vol 21, Iss 5, Pp 631-645 (2008)

Subject Terms: rhizobium, Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/6635bf71b053468ba8fb4033d803b7d9

Identification of 118 Arabidopsis Transcription Factor and 30 Ubiquitin-Ligase Genes Responding to Chitin, a Plant-Defense Elicitor

Authors: Marc Libault, Jinrong Wan, Tomasz Czechowski, Michael Udvardi, Gary Stacey

Source: Molecular Plant-Microbe Interactions, Vol 20, Iss 8, Pp 900-911 (2007)

Subject Terms: PAMP, Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/7fb19aa4d179465da99c974a248cf05c

Plant Single Cell Type Systems Biology

Authors: Marc Libault, Sixue Chen

Subject Terms: QK1-989, Q1-390, single cell types, root hair, molecular phenotype, omic analyses, guard cell, Systems Biology, Trichome, plant reproduction, Botany and plant sciences

File Description: image/jpeg

Relation: Frontiers Research Topics

Access URL: https://directory.doabooks.org/handle/20.500.12854/56359
http://www.frontiersin.org/books/Plant_Single_Cell_Type_Systems_Biology/977#nogo
http://journal.frontiersin.org/researchtopic/3343/plant-single-cell-type-systems-biology