Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

Authors: Ana Paula Zotta Mota, Georgios D. Koutsovoulos, Laetitia Perfus-Barbeoch, Evelin Despot-Slade, Karine Labadie, Jean-Marc Aury, Karine Robbe-Sermesant, Marc Bailly-Bechet, Caroline Belser, Arthur Péré, Corinne Rancurel, Djampa K. Kozlowski, Rahim Hassanaly-Goulamhoussen, Martine Da Rocha, Benjamin Noel, Nevenka Meštrović, Patrick Wincker, Etienne G. J. Danchin

Source: Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e48f9917fe904af48ea48b5abfb6148a

Discovery and multimerization of cross-reactive single-domain antibodies against SARS-like viruses to enhance potency and address emerging SARS-CoV-2 variants

Authors: Scott A. Hollingsworth, Cameron L. Noland, Karin Vroom, Anasuya Saha, Miranda Sam, Qinshan Gao, Haihong Zhou, David U. Grandy, Sujata Singh, Zhiyun Wen, Christopher Warren, Xiaohong Shirley Ma, Daniel Malashock, Jennifer Galli, Gwenny Go, Michael Eddins, Todd Mayhood, Karthik Sathiyamoorthy, Arthur Fridman, Fahimeh Raoufi, Yacob Gomez-Llorente, Andrea Patridge, Yinyan Tang, Shi-Juan Chen, Marc Bailly, Chengjie Ji, Laura J. Kingsley, Alan C. Cheng, Bernhard H. Geierstanger, Daniel M. Gorman, Lan Zhang, Kalyan Pande

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-15 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/a9d7ab42a9cb4a6cb05bac47eef92301

A machine learning strategy for the identification of key in silico descriptors and prediction models for IgG monoclonal antibody developability properties

Authors: Andrew B. Waight, David Prihoda, Rojan Shrestha, Kevin Metcalf, Marc Bailly, Marco Ancona, Talal Widatalla, Zachary Rollins, Alan C Cheng, Danny A. Bitton, Laurence Fayadat-Dilman

Source: mAbs, Vol 15, Iss 1 (2023)

Subject Terms: Biophysical, computational, descriptors, developability, IgG1, machine learning, Therapeutics. Pharmacology, RM1-950, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://doaj.org/toc/1942-0862; https://doaj.org/toc/1942-0870

Access URL: https://doaj.org/article/b097c809663e4798a43b8ba6b107fe06

Improvement of eukaryotic protein predictions from soil metagenomes

Authors: Carole Belliardo, Georgios D. Koutsovoulos, Corinne Rancurel, Mathilde Clément, Justine Lipuma, Marc Bailly-Bechet, Etienne G. J. Danchin

Source: Scientific Data, Vol 9, Iss 1, Pp 1-14 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/25fac91adecb49c387550abcc28752c8

AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers.

Authors: Georgios D Koutsovoulos, Solène Granjeon Noriot, Marc Bailly-Bechet, Etienne G J Danchin, Corinne Rancurel

Source: PLoS Computational Biology, Vol 18, Iss 11, p e1010686 (2022)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/5ddc7343411e49eaadaf1d607c4f1deb

Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest

Authors: Djampa K. L. Kozlowski, Rahim Hassanaly‐Goulamhoussen, Martine Da Rocha, Georgios D. Koutsovoulos, Marc Bailly‐Bechet, Etienne G. J. Danchin

Source: Evolutionary Applications, Vol 14, Iss 7, Pp 1844-1866 (2021)

Subject Terms: bioinformatics/phyloinformatics, contemporary evolution, evolution of sex, genomics/proteomics, host–parasite interactions, hybridization, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/58db17ac8a6e48d995b51931b09a696a

Hexamerization of Anti-SARS CoV IgG1 Antibodies Improves Neutralization Capacity

Authors: Kalyan Pande, Scott A. Hollingsworth, Miranda Sam, Qinshan Gao, Sujata Singh, Anasuya Saha, Karin Vroom, Xiaohong Shirley Ma, Tres Brazell, Dan Gorman, Shi-Juan Chen, Fahimeh Raoufi, Marc Bailly, David Grandy, Karthik Sathiyamoorthy, Lan Zhang, Rob Thompson, Alan C. Cheng, Laurence Fayadat-Dilman, Bernhard H. Geierstanger, Laura J. Kingsley

Source: Frontiers in Immunology, Vol 13 (2022)

Subject Terms: hexamer-enhancing IgG1 mutations, SARS-CoV, viral neutralization, complement, C1q binding, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2022.864775/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/145d782d89b84e8a8997fe9cccda8169

ZMYM3: a new candidate gene in nonobstructive azoospermia?

Authors: Morgane Le Beulze, Nelly Swierkowski-Blanchard, Farah Ghieh, Joanne Fortemps, Carole Gerault, Valérie Serazin, Anne Louboutin-Sanchez, Marc Bailly, François Vialard

Source: Asian Journal of Andrology, Vol 25, Iss 5, Pp 648-649 (2023)

Subject Terms: Diseases of the genitourinary system. Urology, RC870-923

File Description: electronic resource

Relation: http://www.ajandrology.com/article.asp?issn=1008-682X;year=2023;volume=25;issue=5;spage=648;epage=649;aulast=; https://doaj.org/toc/1008-682X; https://doaj.org/toc/1745-7262

Access URL: https://doaj.org/article/2192aa3514b24652826bcde121e0e1ec

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest

Authors: Georgios D. Koutsovoulos, Eder Marques, Marie‐Jeanne Arguel, Laurent Duret, Andressa C. Z. Machado, Regina M. D. G. Carneiro, Djampa K. Kozlowski, Marc Bailly‐Bechet, Philippe Castagnone‐Sereno, Erika V. S. Albuquerque, Etienne G. J. Danchin

Source: Evolutionary Applications, Vol 13, Iss 2, Pp 442-457 (2020)

Subject Terms: agricultural pest, clonal evolution, host races, Meloidogyne incognita, parallel adaptation, population genomics, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/786f6ebb6aa748ae85e9d3cf5a6e2a34

Sequencing the Genome of Indian Flying Fox, Natural Reservoir of Nipah Virus, Using Hybrid Assembly and Conservative Secondary Scaffolding

Authors: Julien Fouret, Frédéric G. Brunet, Martin Binet, Noémie Aurine, Francois Enchéry, Séverine Croze, Marie Guinier, Abdelghafar Goumaidi, Doris Preininger, Jean-Nicolas Volff, Marc Bailly-Bechet, Joël Lachuer, Branka Horvat, Catherine Legras-Lachuer

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: hybrid genome assembly, Nipah virus, Pteropus medius, Pteropus giganteus, secondary scaffolding, bats, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.01807/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/0b5640989cbc46aa8ff154c268c7e7a0

SPINK2 deficiency causes infertility by inducing sperm defects in heterozygotes and azoospermia in homozygotes

Authors: Zine‐Eddine Kherraf, Marie Christou‐Kent, Thomas Karaouzene, Amir Amiri‐Yekta, Guillaume Martinez, Alexandra S Vargas, Emeline Lambert, Christelle Borel, Béatrice Dorphin, Isabelle Aknin‐Seifer, Michael J Mitchell, Catherine Metzler‐Guillemain, Jessica Escoffier, Serge Nef, Mariane Grepillat, Nicolas Thierry‐Mieg, Véronique Satre, Marc Bailly, Florence Boitrelle, Karin Pernet‐Gallay, Sylviane Hennebicq, Julien Fauré, Serge P Bottari, Charles Coutton, Pierre F Ray, Christophe Arnoult

Source: EMBO Molecular Medicine, Vol 9, Iss 8, Pp 1132-1149 (2017)

Subject Terms: azoospermia, exome sequencing, genetics, infertility, spermatogenesis, Medicine (General), R5-920, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1757-4676; https://doaj.org/toc/1757-4684

Access URL: https://doaj.org/article/acfdace776ce4e4b925803c814b43c54

Predicting Antibody Developability Profiles Through Early Stage Discovery Screening

Authors: Marc Bailly, Carl Mieczkowski, Veronica Juan, Essam Metwally, Daniela Tomazela, Jeanne Baker, Makiko Uchida, Ester Kofman, Fahimeh Raoufi, Soha Motlagh, Yao Yu, Jihea Park, Smita Raghava, John Welsh, Michael Rauscher, Gopalan Raghunathan, Mark Hsieh, Yi-Ling Chen, Hang Thu Nguyen, Nhung Nguyen, Dan Cipriano, Laurence Fayadat-Dilman

Source: mAbs, Vol 12, Iss 1 (2020)

Subject Terms: Monoclonal antibodies, developability, protein analytics, biophysical properties, protein engineering, antibody discovery, Therapeutics. Pharmacology, RM1-950, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://doaj.org/toc/1942-0862; https://doaj.org/toc/1942-0870

Access URL: https://doaj.org/article/adb0a7cc163a47868054a9dee9dd053c

Treatment of SHIV-infected, ART-suppressed rhesus macaques with bispecific HIVxCD3 DART® molecules

Authors: Daniel M. Gorman, Ming-Tain Lai, Carolyn McHale, Meiqing Lu, Don Graham, Julie Strizki, Yanyan Zheng, Shirley Ma, Soha Moltagh, Marc Bailly, SuChun Hseih, Glareh Azadi, Yaoli Song, Fernando Ugarte, Romina Riener, Wendy Blumenschein, Daria Hazuda, Jeffery Nordstrom, Bonnie Howell

Source: Journal of Virus Eradication, Vol 5, Iss , Pp 22- (2019)

Subject Terms: Microbiology, QR1-502, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2055664020301278; https://doaj.org/toc/2055-6640

Access URL: https://doaj.org/article/f2198540a84f48a28c4ad2e3cd169728

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

Authors: Romain Blanc-Mathieu, Laetitia Perfus-Barbeoch, Jean-Marc Aury, Martine Da Rocha, Jérôme Gouzy, Erika Sallet, Cristina Martin-Jimenez, Marc Bailly-Bechet, Philippe Castagnone-Sereno, Jean-François Flot, Djampa K Kozlowski, Julie Cazareth, Arnaud Couloux, Corinne Da Silva, Julie Guy, Yu-Jin Kim-Jo, Corinne Rancurel, Thomas Schiex, Pierre Abad, Patrick Wincker, Etienne G J Danchin

Source: PLoS Genetics, Vol 13, Iss 6, p e1006777 (2017)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5465968?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/cbb373d2188d4d35a69f1ed7f6950bff

The biased nucleotide composition of HIV-1 triggers type I interferon response and correlates with subtype D increased pathogenicity.

Authors: Nicolas Vabret, Marc Bailly-Bechet, Valérie Najburg, Michaela Müller-Trutwin, Bernard Verrier, Frédéric Tangy

Source: PLoS ONE, Vol 7, Iss 4, p e33502 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3329495?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/9ab983b4c4ae43b29577393febb9f92d

Genetic polymorphisms influence the ovarian response to rFSH stimulation in patients undergoing in vitro fertilization programs with ICSI.

Authors: Radia Boudjenah, Denise Molina-Gomes, Antoine Torre, Marianne Bergere, Marc Bailly, Florence Boitrelle, Stéphane Taieb, Robert Wainer, Mohamed Benahmed, Philippe de Mazancourt, Jacqueline Selva, François Vialard

Source: PLoS ONE, Vol 7, Iss 6, p e38700 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3372493?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f53e5d01e620437bb152151e2aa2e9aa

Codon usage domains over bacterial chromosomes.

Authors: Marc Bailly-Bechet, Antoine Danchin, Mudassar Iqbal, Matteo Marsili, Massimo Vergassola

Source: PLoS Computational Biology, Vol 2, Iss 4, p e37 (2006)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC1447655?pdf=render; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/c2f9d329f96e41df98243cad0e553967

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Influence of the number of motile spermatozoa inseminated and of their morphology on the success of intrauterine insemination.

Authors: Robert Wainer, Martine Albert, Agnès Dorion, Marc Bailly, Marianne Bergère, Raoul Lombroso, Myriam Gombault, Jacqueline Selva

Source: Human Reproduction; Sep2004, Vol. 19 Issue 9, p2060-2065, 6p

Subject Terms: SPERMATOZOA, HUMAN artificial insemination, FOLLICLE-stimulating hormone, PREGNANCY

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