Molecular Evolutionary Analyses of the Spike Protein Gene and Spike Protein in the SARS-CoV-2 Omicron Subvariants

Authors: Norika Nagasawa, Ryusuke Kimura, Mao Akagawa, Tatsuya Shirai, Mitsuru Sada, Kaori Okayama, Yuka Sato-Fujimoto, Makoto Saito, Mayumi Kondo, Kazuhiko Katayama, Akihide Ryo, Makoto Kuroda, Hirokazu Kimura

Source: Microorganisms, Vol 11, Iss 9, p 2336 (2023)

Subject Terms: SARS-CoV-2 Omicron subvariants, evolution, spike protein gene, conformational epitope, receptor-binding domain (RBD), vaccine evasion, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/9/2336; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/8728f7d88448447f8dd6a77c4d21213d

Molecular Evolutionary Analyses of the Pseudomonas-Derived Cephalosporinase Gene

Authors: Tatsuya Shirai, Mao Akagawa, Miho Makino, Manami Ishii, Ayaka Arai, Norika Nagasawa, Mitsuru Sada, Ryusuke Kimura, Kaori Okayama, Taisei Ishioka, Haruyuki Ishii, Shinichiro Hirai, Akihide Ryo, Haruyoshi Tomita, Hirokazu Kimura

Source: Microorganisms, Vol 11, Iss 3, p 635 (2023)

Subject Terms: Pseudomonas aeruginosa, PDC, evolution, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/3/635; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/45a6945b25bd44bf9e1cd2b06483dfc4

Detailed Molecular Interactions between Respiratory Syncytial Virus Fusion Protein and the TLR4/MD-2 Complex In Silico

Authors: Mao Akagawa, Tatsuya Shirai, Mitsuru Sada, Norika Nagasawa, Mayumi Kondo, Makoto Takeda, Koo Nagasawa, Ryusuke Kimura, Kaori Okayama, Yuriko Hayashi, Toshiyuki Sugai, Takeshi Tsugawa, Haruyuki Ishii, Hisashi Kawashima, Kazuhiko Katayama, Akihide Ryo, Hirokazu Kimura

Source: Viruses, Vol 14, Iss 11, p 2382 (2022)

Subject Terms: respiratory syncytial virus, Toll-like receptor 4, myeloid differentiation factor-2, in silico, docking simulation, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/11/2382; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/d167ac91160a426ba0477bb359765584

Molecular Evolution of the Pseudomonas aeruginosa DNA Gyrase gyrA Gene

Authors: Mitsuru Sada, Hirokazu Kimura, Norika Nagasawa, Mao Akagawa, Kaori Okayama, Tatsuya Shirai, Soyoka Sunagawa, Ryusuke Kimura, Takeshi Saraya, Haruyuki Ishii, Daisuke Kurai, Takeshi Tsugawa, Atsuyoshi Nishina, Haruyoshi Tomita, Mitsuaki Okodo, Shinichiro Hirai, Akihide Ryo, Taisei Ishioka, Koichi Murakami

Source: Microorganisms, Vol 10, Iss 8, p 1660 (2022)

Subject Terms: Pseudomonas aeruginosa, gyrase A gene, selective pressure, quinolone resistance, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/10/8/1660; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/9df7d726392a4c89bf2dac1cec76f460