Building up a genomic surveillance platform for SARS-CoV-2 in the middle of a pandemic: a true North–South collaboration

Authors: Fyezah Jehan, Patrick Ayscue, Waqasuddin Khan, Furqan Kabir, Imran Nisar, Allison Black, Samiah Kanwar, Fatima Aziz, Sahrish Muneer, Adil Kalam, Mehdia Nadeem Rajab Ali, Nadia Ansari, Manu Vanaerschot, Vida Ahyong, Liz Fahsbender, Katrina Kalantar, Abigail Glascock, Juliana Gil, Cristina Tato

Source: BMJ Global Health, Vol 8, Iss 11 (2023)

Subject Terms: Medicine (General), R5-920, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://gh.bmj.com/content/8/11/e012589.full; https://doaj.org/toc/2059-7908

Access URL: https://doaj.org/article/104801a489db4920b20e82f9fb7acc4b

Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries

Authors: Celine Perier, Emmanuel Nasinghe, Isabelle Charles, Leoson Junior Ssetaba, Vida Ahyong, Derek Bangs, P. Robert Beatty, Nadine Czudnochowski, Amy Diallo, Eli Dugan, Jacqueline M. Fabius, Hildy Fong Baker, Jackson Gardner, Stephen Isaacs, Birungi Joanah, Katrina Kalantar, David Kateete, Matt Knight, Maria Krasilnikov, Nevan J. Krogan, Chaz Langelier, Eric Lee, Lucy M. Li, Daniel Licht, Katie Lien, Zilose Lyons, Gerald Mboowa, Ivan Mwebaza, Savannah Mwesigwa, Geraldine Nalwadda, Robert Nichols, Maria Elena Penaranda, Sarah Petnic, Maira Phelps, Stephen J. Popper, Michael Rape, Arthur Reingold, Richard Robbins, Oren S. Rosenberg, David F. Savage, Samuel Schildhauer, Matthew L. Settles, Ivan Sserwadda, Sarah Stanley, Cristina M. Tato, Alexandra Tsitsiklis, Erik Van Dis, Manu Vanaerschot, Joanna Vinden, Jeffery S. Cox, Moses L. Joloba, Julia Schaletzky

Source: Global Health Action, Vol 15, Iss 1 (2022)

Subject Terms: capacity strengthening, africa, uganda, research, infectious diseases, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/1654-9880

Access URL: https://doaj.org/article/a7c38009f6404c1d8f6807180da59309

The antimalarial efficacy and mechanism of resistance of the novel chemotype DDD01034957

Authors: Celia Miguel-Blanco, James M. Murithi, Ernest Diez Benavente, Fiona Angrisano, Katarzyna A. Sala, Donelly A. van Schalkwyk, Manu Vanaerschot, Frank Schwach, Matthew J. Fuchter, Oliver Billker, Colin J. Sutherland, Susana G. Campino, Taane G. Clark, Andrew M. Blagborough, David A. Fidock, Esperanza Herreros, Francisco Javier Gamo, Jake Baum, Michael J. Delves

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-9 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/900b4a91fa834a71a9fd17eeaf2b6009

Luna Virus and Helminths in Wild Mastomys natalensis in Two Contrasting Habitats in Zambia: Risk Factors and Evidence of Virus Dissemination in Semen

Authors: Samuel Munalula Munjita, Given Moonga, Andrew Nalishuwa Mukubesa, Joseph Ndebe, Benjamin Mubemba, Manu Vanaerschot, Cristina Tato, John Tembo, Nathan Kapata, Simbarashe Chitanga, Katendi Changula, Mashiro Kajihara, Walter Muleya, Ayato Takada, Elisabeth Fichet-Calvet, Alimuddin Zumla, Hirofumi Sawa, Matthew Bates, Sody Munsaka, Edgar Simulundu

Source: Pathogens, Vol 11, Iss 11, p 1345 (2022)

Subject Terms: metagenomics, semen, foetus, reads, prevalence, risk factors, Medicine

File Description: electronic resource

Relation: https://www.mdpi.com/2076-0817/11/11/1345; https://doaj.org/toc/2076-0817

Access URL: https://doaj.org/article/9cd7c933c28e4fb7ab9f2610d4e98932

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.

Authors: Emily D Crawford, Irene Acosta, Vida Ahyong, Erika C Anderson, Shaun Arevalo, Daniel Asarnow, Shannon Axelrod, Patrick Ayscue, Camillia S Azimi, Caleigh M Azumaya, Stefanie Bachl, Iris Bachmutsky, Aparna Bhaduri, Jeremy Bancroft Brown, Joshua Batson, Astrid Behnert, Ryan M Boileau, Saumya R Bollam, Alain R Bonny, David Booth, Michael Jerico B Borja, David Brown, Bryan Buie, Cassandra E Burnett, Lauren E Byrnes, Katelyn A Cabral, Joana P Cabrera, Saharai Caldera, Gabriela Canales, Gloria R Castañeda, Agnes Protacio Chan, Christopher R Chang, Arthur Charles-Orszag, Carly Cheung, Unseng Chio, Eric D Chow, Y Rose Citron, Allison Cohen, Lillian B Cohn, Charles Chiu, Mitchel A Cole, Daniel N Conrad, Angela Constantino, Andrew Cote, Tre'Jon Crayton-Hall, Spyros Darmanis, Angela M Detweiler, Rebekah L Dial, Shen Dong, Elias M Duarte, David Dynerman, Rebecca Egger, Alison Fanton, Stacey M Frumm, Becky Xu Hua Fu, Valentina E Garcia, Julie Garcia, Christina Gladkova, Miriam Goldman, Rafael Gomez-Sjoberg, M Grace Gordon, James C R Grove, Shweta Gupta, Alexis Haddjeri-Hopkins, Pierce Hadley, John Haliburton, Samantha L Hao, George Hartoularos, Nadia Herrera, Melissa Hilberg, Kit Ying E Ho, Nicholas Hoppe, Shayan Hosseinzadeh, Conor J Howard, Jeffrey A Hussmann, Elizabeth Hwang, Danielle Ingebrigtsen, Julia R Jackson, Ziad M Jowhar, Danielle Kain, James Y S Kim, Amy Kistler, Oriana Kreutzfeld, Jessie Kulsuptrakul, Andrew F Kung, Charles Langelier, Matthew T Laurie, Lena Lee, Kun Leng, Kristoffer E Leon, Manuel D Leonetti, Sophia R Levan, Sam Li, Aileen W Li, Jamin Liu, Heidi S Lubin, Amy Lyden, Jennifer Mann, Sabrina Mann, Gorica Margulis, Diana M Marquez, Bryan P Marsh, Calla Martyn, Elizabeth E McCarthy, Aaron McGeever, Alexander F Merriman, Lauren K Meyer, Steve Miller, Megan K Moore, Cody T Mowery, Tanzila Mukhtar, Lusajo L Mwakibete, Noelle Narez, Norma F Neff, Lindsay A Osso, Diter Oviedo, Suping Peng, Maira Phelps, Kiet Phong, Peter Picard, Lindsey M Pieper, Neha Pincha, Angela Oliveira Pisco, Angela Pogson, Sergei Pourmal, Robert R Puccinelli, Andreas S Puschnik, Elze Rackaityte, Preethi Raghavan, Madhura Raghavan, James Reese, Joseph M Replogle, Hanna Retallack, Helen Reyes, Donald Rose, Marci F Rosenberg, Estella Sanchez-Guerrero, Sydney M Sattler, Laura Savy, Stephanie K See, Kristin K Sellers, Paula Hayakawa Serpa, Maureen Sheehy, Jonathan Sheu, Sukrit Silas, Jessica A Streithorst, Jack Strickland, Doug Stryke, Sara Sunshine, Peter Suslow, Renaldo Sutanto, Serena Tamura, Michelle Tan, Jiongyi Tan, Alice Tang, Cristina M Tato, Jack C Taylor, Iliana Tenvooren, Erin M Thompson, Edward C Thornborrow, Eric Tse, Tony Tung, Marc L Turner, Victoria S Turner, Rigney E Turnham, Mary J Turocy, Trisha V Vaidyanathan, Ilia D Vainchtein, Manu Vanaerschot, Sara E Vazquez, Anica M Wandler, Anne Wapniarski, James T Webber, Zara Y Weinberg, Alexandra Westbrook, Allison W Wong, Emily Wong, Gajus Worthington, Fang Xie, Albert Xu, Terrina Yamamoto, Ying Yang, Fauna Yarza, Yefim Zaltsman, Tina Zheng, Joseph L DeRisi

Source: PLoS Pathogens, Vol 16, Iss 10, p e1008966 (2020)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/3bbb68a359bd42bc9db996dc6d89e140

Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids

Authors: Bart Cuypers, Malgorzata A. Domagalska, Pieter Meysman, Géraldine de Muylder, Manu Vanaerschot, Hideo Imamura, Franck Dumetz, Thomas Wolf Verdonckt, Peter J. Myler, Gowthaman Ramasamy, Kris Laukens, Jean-Claude Dujardin

Source: Scientific Reports, Vol 7, Iss 1, Pp 1-11 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/42bf4dbddfc34561be9f8377912ded62

Genomes of Leishmania parasites directly sequenced from patients with visceral leishmaniasis in the Indian subcontinent.

Authors: Malgorzata A Domagalska, Hideo Imamura, Mandy Sanders, Frederik Van den Broeck, Narayan Raj Bhattarai, Manu Vanaerschot, Ilse Maes, Erika D'Haenens, Keshav Rai, Suman Rijal, Matthew Berriman, James A Cotton, Jean-Claude Dujardin

Source: PLoS Neglected Tropical Diseases, Vol 13, Iss 12, p e0007900 (2019)

Subject Terms: Arctic medicine. Tropical medicine, RC955-962, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0007900&type=printable; https://doaj.org/toc/1935-2727; https://doaj.org/toc/1935-2735

Access URL: https://doaj.org/article/78e0f372d4d44df99c6f7c978ea13d57

Single locus genotyping to track Leishmania donovani in the Indian subcontinent: Application in Nepal.

Authors: Keshav Rai, Narayan Raj Bhattarai, Manu Vanaerschot, Hideo Imamura, Gebreyohans Gebru, Basudha Khanal, Suman Rijal, Marleen Boelaert, Chiranjib Pal, Prahlad Karki, Jean-Claude Dujardin, Gert Van der Auwera

Source: PLoS Neglected Tropical Diseases, Vol 11, Iss 3, p e0005420 (2017)

Subject Terms: Arctic medicine. Tropical medicine, RC955-962, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5348045?pdf=render; https://doaj.org/toc/1935-2727; https://doaj.org/toc/1935-2735

Access URL: https://doaj.org/article/58e1db1fcb7a47318836a178753d1931

Macromolecular biosynthetic parameters and metabolic profile in different life stages of Leishmania braziliensis: Amastigotes as a functionally less active stage.

Authors: Marlene Jara, Maya Berg, Guy Caljon, Geraldine de Muylder, Bart Cuypers, Denis Castillo, Ilse Maes, María Del Carmen Orozco, Manu Vanaerschot, Jean-Claude Dujardin, Jorge Arevalo

Source: PLoS ONE, Vol 12, Iss 7, p e0180532 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5526552?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/c467290aa8514aea8cef91c0da24d142

Evidence of multiple bacterial, viral, and parasitic infectious disease agents in Mastomys natalensis rodents in riverine areas in selected parts of Zambia

Authors: Samuel Munalula Munjita, Annie Kalonda, Benjamin Mubemba, Manu Vanaerschot, Cristina Tato, Lusajo Mwakibete, John Tembo, Simbarashe Chitanga, Katendi Changula, Masahiro Kajihara, Walter Muleya, Hirofumi Sawa, Ayato Takada, Matthew Bates, Sody Munsaka, Edgar Simulundu

Source: Infection Ecology & Epidemiology, Vol 15, Iss 1 (2025)

Subject Terms: Semen, Rodents, Hotspots, Zoonoses, Riverine areas, Zambia, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/2000-8686

Access URL: https://doaj.org/article/28398b5dd95c4459b5a4bcc0daf31bf4

Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent

Authors: Hideo Imamura, Tim Downing, Frederik Van den Broeck, Mandy J Sanders, Suman Rijal, Shyam Sundar, An Mannaert, Manu Vanaerschot, Maya Berg, Géraldine De Muylder, Franck Dumetz, Bart Cuypers, Ilse Maes, Malgorzata Domagalska, Saskia Decuypere, Keshav Rai, Surendra Uranw, Narayan Raj Bhattarai, Basudha Khanal, Vijay Kumar Prajapati, Smriti Sharma, Olivia Stark, Gabriele Schönian, Harry P De Koning, Luca Settimo, Benoit Vanhollebeke, Syamal Roy, Bart Ostyn, Marleen Boelaert, Louis Maes, Matthew Berriman, Jean-Claude Dujardin, James A Cotton

Source: eLife, Vol 5 (2016)

Subject Terms: leishmania donovani, genomics, evolution, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/12613; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/3bf46ac4e98d432082a2d1782417edae

Relapse after Treatment with Miltefosine for Visceral Leishmaniasis Is Associated with Increased Infectivity of the Infecting Leishmania donovani Strain

Authors: Keshav Rai, Bart Cuypers, Narayan Raj Bhattarai, Surendra Uranw, Maya Berg, Bart Ostyn, Jean-Claude Dujardin, Suman Rijal, Manu Vanaerschot

Source: mBio, Vol 4, Iss 5 (2013)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/0acc5575c4354d92b00579755b729bc4

LC-MS METABOLOMICS FROM STUDY DESIGN TO DATA-ANALYSIS – USING A VERSATILE PATHOGEN AS A TEST CASE

Authors: Maya Berg, Manu Vanaerschot, Andris Jankevics, Bart Cuypers, Rainer Breitling, Jean-Claude Dujardin

Source: Computational and Structural Biotechnology Journal, Vol 4, Iss 5 (2013)

Subject Terms: mass spectrometry, HILIC, Leishmania, unicellular trypanosomatid parasites, global molecular profiles, systems biology, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037014600453; https://doaj.org/toc/2001-0370

Access URL: https://doaj.org/article/7b3e5a4dcbed40588924fdf202926d2c

Molecular mechanisms of drug resistance in natural Leishmania populations vary with genetic background.

Authors: Saskia Decuypere, Manu Vanaerschot, Kirstyn Brunker, Hideo Imamura, Sylke Müller, Basudha Khanal, Suman Rijal, Jean-Claude Dujardin, Graham H Coombs

Source: PLoS Neglected Tropical Diseases, Vol 6, Iss 2, p e1514 (2012)

Subject Terms: Arctic medicine. Tropical medicine, RC955-962, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22389733/?tool=EBI; https://doaj.org/toc/1935-2727; https://doaj.org/toc/1935-2735

Access URL: https://doaj.org/article/3cc11c779a5c45b59e37c9791843ce84

Treatment of visceral leishmaniasis: model-based analyses on the spread of antimony-resistant L. donovani in Bihar, India.

Authors: Anette Stauch, Hans-Peter Duerr, Jean-Claude Dujardin, Manu Vanaerschot, Shyam Sundar, Martin Eichner

Source: PLoS Neglected Tropical Diseases, Vol 6, Iss 12, p e1973 (2012)

Subject Terms: Arctic medicine. Tropical medicine, RC955-962, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0001973&type=printable; https://doaj.org/toc/1935-2727; https://doaj.org/toc/1935-2735

Access URL: https://doaj.org/article/62ec8d86c62842f5bb5b0aabce23e483

Comparative gene expression analysis throughout the life cycle of Leishmania braziliensis: diversity of expression profiles among clinical isolates.

Authors: Vanessa Adaui, Denis Castillo, Mirko Zimic, Andres Gutierrez, Saskia Decuypere, Manu Vanaerschot, Simonne De Doncker, Kathy Schnorbusch, Ilse Maes, Gert Van der Auwera, Louis Maes, Alejandro Llanos-Cuentas, Jorge Arevalo, Jean-Claude Dujardin

Source: PLoS Neglected Tropical Diseases, Vol 5, Iss 5, p e1021 (2011)

Subject Terms: Arctic medicine. Tropical medicine, RC955-962, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3091834?pdf=render; https://doaj.org/toc/1935-2727; https://doaj.org/toc/1935-2735

Access URL: https://doaj.org/article/0d8d4b05b6604de8b2fca0cdc569c873

Antimonial resistance in Leishmania donovani is associated with increased in vivo parasite burden.

Authors: Manu Vanaerschot, Simonne De Doncker, Suman Rijal, Louis Maes, Jean-Claude Dujardin, Saskia Decuypere

Source: PLoS ONE, Vol 6, Iss 8, p e23120 (2011)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3148249?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/573a869d4a294f1da1f9307a31b94d90

Linking in vitro and in vivo survival of clinical Leishmania donovani strains.

Authors: Manu Vanaerschot, Ilse Maes, Meriem Ouakad, Vanessa Adaui, Louis Maes, Simonne De Doncker, Suman Rijal, François Chappuis, Jean-Claude Dujardin, Saskia Decuypere

Source: PLoS ONE, Vol 5, Iss 8, p e12211 (2010)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2923181?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/177d362d47474f8c86e9dae481d79609

Investigation of acute encephalitis syndrome with implementation of metagenomic next generation sequencing in Nepal.

Authors: Rajeev, Shrestha, Nishan, Katuwal, Dipesh, Tamrakar, M, Tato Cristina, Manu, Vanaerschot, Vida, Ahyong, Juliana, Gil, Surendra Kumar, Madhup, Binod, Gupta, Runa, Jha

Source: BMC Infectious Diseases; 7/24/2024, Vol. 24 Issue 1, p1-11, 11p

Subject Terms: NUCLEOTIDE sequencing, METAGENOMICS, JAPANESE B encephalitis, ENTEROVIRUS diseases, ENCEPHALITIS, VACCINATION coverage, FREEZE-thaw cycles

Geographic Terms: NEPAL

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