PCa-Clf: A Classifier of Prostate Cancer Patients into Patients with Indolent and Aggressive Tumors Using Machine Learning.

Authors: Mamidi, Yashwanth Karthik Kumar¹, mamidiyashwanth20@gmail.com, Mamidi, Tarun Karthik Kumar^2,3, tmamidi@uab.edu, Kabir, Md Wasi Ul¹, mkabir3@uno.edu, Wu, Jiande⁴, jiandewu@lsuhsc.edu, Hoque, Md Tamjidul¹, thoque@uno.edu, Hicks, Chindo⁴, thoque@uno.edu

Source: Machine Learning & Knowledge Extraction; Dec2023, Vol. 5 Issue 4, p1302-1319, 18p

Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

Authors: Mamidi, Tarun Karthik Kumar, Wu, Jiande, Hicks, Chindo

Source: BMC cancer. 19(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100127175351.0x000001&indx=1&recIds=ETOCvdc_100127175351.0x000001

Interactions between Germline and Somatic Mutated Genes in Aggressive Prostate Cancer.

Authors: Mamidi, Tarun Karthik Kumar¹, Wu, Jiande¹, Hicks, Chindo¹

Source: Prostate Cancer (20903111). 3/17/2019, p1-11. 11p.

Subject Terms: *SOMATIC mutation, *PROSTATE cancer, *GERM cells, *GENES

Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project

Authors: Stenton, Sarah L., O’Leary, Melanie C., Lemire, Gabrielle, VanNoy, Grace E., DiTroia, Stephanie, Ganesh, Vijay S., Groopman, Emily, O’Heir, Emily, Mangilog, Brian, Osei-Owusu, Ikeoluwa, Pais, Lynn S., Serrano, Jillian, Singer-Berk, Moriel, Weisburd, Ben, Wilson, Michael W., Austin-Tse, Christina, Abdelhakim, Marwa, Althagafi, Azza, Babbi, Giulia, Bellazzi, Riccardo, Bovo, Samuele, Carta, Maria Giulia, Casadio, Rita, Coenen, Pieter-Jan, De Paoli, Federica, Floris, Matteo, Gajapathy, Manavalan, Hoehndorf, Robert, Jacobsen, Julius O. B., Joseph, Thomas, Kamandula, Akash, Katsonis, Panagiotis, Kint, Cyrielle, Lichtarge, Olivier, Limongelli, Ivan, Lu, Yulan, Magni, Paolo, Mamidi, Tarun Karthik Kumar, Martelli, Pier Luigi, Mulargia, Marta, Nicora, Giovanna, Nykamp, Keith, Pejaver, Vikas, Peng, Yisu, Pham, Thi Hong Cam, Podda, Maurizio S., Rao, Aditya, Rizzo, Ettore, Saipradeep, Vangala G., Savojardo, Castrense, Schols, Peter, Shen, Yang, Sivadasan, Naveen, Smedley, Damian, Soru, Dorian, Srinivasan, Rajgopal, Sun, Yuanfei, Sunderam, Uma, Tan, Wuwei, Tiwari, Naina, Wang, Xiao, Wang, Yaqiong, Williams, Amanda, Worthey, Elizabeth A., Yin, Rujie, You, Yuning, Zeiberg, Daniel, Zucca, Susanna, Bakolitsa, Constantina, Brenner, Steven E., Fullerton, Stephanie M., Radivojac, Predrag, Rehm, Heidi L., O’Donnell-Luria, Anne

Source: Human Genomics; December 2024, Vol. 18 Issue: 1

Unraveling the Genomic-Epigenomic Interaction Landscape in Triple Negative and Non-Triple Negative Breast Cancer.

Authors: Wu, Jiande¹ (AUTHOR) jwu2@lsuhsc.edu, Mamidi, Tarun Karthik Kumar² (AUTHOR) tmamidi@uab.edu, Zhang, Lu³ (AUTHOR) lz3@clemson.edu, Hicks, Chindo¹ (AUTHOR) chick3@lsuhsc.edu

Source: Cancers. Jun2020, Vol. 12 Issue 6, p1559. 1p.

Subject Terms: *BREAST tumors, *CELLULAR signal transduction, *GENE expression, *GENETIC techniques, *GENETIC mutation, *GENOMICS, *DNA methylation, *EPIGENOMICS

Deconvolution of the Genomic and Epigenomic Interaction Landscape of Triple-Negative Breast Cancer.

Authors: Wu, Jiande¹ (AUTHOR) jwu2@lsuhsc.edu, Mamidi, Tarun Karthik Kumar² (AUTHOR) tmamidi@uab.edu, Zhang, Lu³ (AUTHOR) lz3@clemson.edu, Hicks, Chindo¹ (AUTHOR) chick3@lsuhsc.edu

Source: Cancers. Nov2019, Vol. 11 Issue 11, p1692-1692. 1p.

Subject Terms: *HYPOTHESIS, *APOPTOSIS, *BREAST tumors, *CELLULAR signal transduction, *ESTROGEN, *GENE expression, *GERM cells, *PROTEINS, *GENOMICS, *BRCA genes, *DNA methylation, *EPIGENOMICS

Integrating Germline and Somatic Mutation Information for the Discovery of Biomarkers in Triple-Negative Breast Cancer.

Authors: Wu, Jiande, Mamidi, Tarun Karthik Kumar, Zhang, Lu, Hicks, Chindo

Source: International Journal of Environmental Research & Public Health; Mar2019, Vol. 16 Issue 6, p1055-1055, 1p