Advancing Brain Tumor Analysis: Curating a High-Quality MRI Dataset for Deep Learning-Based Molecular Marker Profiling

Authors: Reddy, Divya D., Saadat, Niloufar, Holcomb, James M., Wagner, Benjamin C., Truong, Nghi C., Bowerman, Jason, Hatanpaa, Kimmo J., Patel, Toral R, Pinho, Marco C., Madhuranthakam, Ananth J, Yogananda, Chandan Ganesh Bangalore, Maldjian, Joseph A.

Source: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) CVPRW Computer Vision and Pattern Recognition Workshops (CVPRW), 2024 IEEE/CVF Conference on. :2373-2379 Jun, 2024

Relation: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)

Federated Learning Enables Big Data for Rare Cancer Boundary Detection

Authors: Pati, Sarthak, Baid, Ujjwal, Edwards, Brandon, Sheller, Micah, Wang, Shih-Han, Reina, G Anthony, Foley, Patrick, Gruzdev, Alexey, Karkada, Deepthi, Davatzikos, Christos, Sako, Chiharu, Ghodasara, Satyam, Bilello, Michel, Mohan, Suyash, Vollmuth, Philipp, Brugnara, Gianluca, Preetha, Chandrakanth J, Sahm, Felix, Maier-Hein, Klaus, Zenk, Maximilian, Bendszus, Martin, Wick, Wolfgang, Calabrese, Evan, Rudie, Jeffrey, Villanueva-Meyer, Javier, Cha, Soonmee, Ingalhalikar, Madhura, Jadhav, Manali, Pandey, Umang, Saini, Jitender, Garrett, John, Larson, Matthew, Jeraj, Robert, Currie, Stuart, Frood, Russell, Fatania, Kavi, Huang, Raymond Y, Chang, Ken, Balana, Carmen, Capellades, Jaume, Puig, Josep, Trenkler, Johannes, Pichler, Josef, Necker, Georg, Haunschmidt, Andreas, Meckel, Stephan, Shukla, Gaurav, Liem, Spencer, Alexander, Gregory S, Lombardo, Joseph, Palmer, Joshua D, Flanders, Adam E, Dicker, Adam P, Sair, Haris I, Jones, Craig K, Venkataraman, Archana, Jiang, Meirui, So, Tiffany Y, Chen, Cheng, Heng, Pheng Ann, Dou, Qi, Kozubek, Michal, Lux, Filip, Michálek, Jan, Matula, Petr, Keřkovský, Miloš, Kopřivová, Tereza, Dostál, Marek, Vybíhal, Václav, Vogelbaum, Michael A, Mitchell, J Ross, Farinhas, Joaquim, Maldjian, Joseph A, Yogananda, Chandan Ganesh Bangalore, Pinho, Marco C, Reddy, Divya, Holcomb, James, Wagner, Benjamin C, Ellingson, Benjamin M, Cloughesy, Timothy F, Raymond, Catalina, Oughourlian, Talia, Hagiwara, Akifumi, Wang, Chencai, To, Minh-Son, Bhardwaj, Sargam, Chong, Chee, Agzarian, Marc, Falcão, Alexandre Xavier, Martins, Samuel B, Teixeira, Bernardo C A, Sprenger, Flávia, Menotti, David, Lucio, Diego R, LaMontagne, Pamela, Marcus, Daniel, Wiestler, Benedikt, Kofler, Florian, Ezhov, Ivan, Metz, Marie, Jain, Rajan, Lee, Matthew, Lui, Yvonne W, McKinley, Richard, Slotboom, Johannes, Radojewski, Piotr, Meier, Raphael, Wiest, Roland, Murcia, Derrick, Fu, Eric, Haas, Rourke, Thompson, John, Ormond, David Ryan, Badve, Chaitra, Sloan, Andrew E, Vadmal, Vachan, Waite, Kristin, Colen, Rivka R, Pei, Linmin, Ak, Murat, Srinivasan, Ashok, Bapuraj, J Rajiv, Rao, Arvind, Wang, Nicholas, Yoshiaki, Ota, Moritani, Toshio, Turk, Sevcan, Lee, Joonsang, Prabhudesai, Snehal, Morón, Fanny, Mandel, Jacob, Kamnitsas, Konstantinos, Glocker, Ben, Dixon, Luke V M, Williams, Matthew, Zampakis, Peter, Panagiotopoulos, Vasileios, Tsiganos, Panagiotis, Alexiou, Sotiris, Haliassos, Ilias, Zacharaki, Evangelia I, Moustakas, Konstantinos, Kalogeropoulou, Christina, Kardamakis, Dimitrios M, Choi, Yoon Seong, Lee, Seung-Koo, Chang, Jong Hee, Ahn, Sung Soo, Luo, Bing, Poisson, Laila, Wen, Ning, Tiwari, Pallavi, Verma, Ruchika, Bareja, Rohan, Yadav, Ipsa, Chen, Jonathan, Kumar, Neeraj, Smits, Marion, van der Voort, Sebastian R, Alafandi, Ahmed, Incekara, Fatih, Wijnenga, Maarten MJ, Kapsas, Georgios, Gahrmann, Renske, Schouten, Joost W, Dubbink, Hendrikus J, Vincent, Arnaud JPE, Bent, Martin J van den, French, Pim J, Klein, Stefan, Yuan, Yading, Sharma, Sonam, Tseng, Tzu-Chi, Adabi, Saba, Niclou, Simone P, Keunen, Olivier, Hau, Ann-Christin, Vallières, Martin, Fortin, David, Lepage, Martin, Landman, Bennett, Ramadass, Karthik, Xu, Kaiwen, Chotai, Silky, Chambless, Lola B, Mistry, Akshitkumar, Thompson, Reid C, Gusev, Yuriy, Bhuvaneshwar, Krithika, Sayah, Anousheh, Bencheqroun, Camelia, Belouali, Anas, Madhavan, Subha, Booth, Thomas C, Chelliah, Alysha, Modat, Marc, Shuaib, Haris, Dragos, Carmen, Abayazeed, Aly, Kolodziej, Kenneth, Hill, Michael, Abbassy, Ahmed, Gamal, Shady, Mekhaimar, Mahmoud, Qayati, Mohamed, Reyes, Mauricio, Park, Ji Eun, Yun, Jihye, Kim, Ho Sung, Mahajan, Abhishek, Muzi, Mark, Benson, Sean, Beets-Tan, Regina G H, Teuwen, Jonas, Herrera-Trujillo, Alejandro, Trujillo, Maria, Escobar, William, Abello, Ana, Bernal, Jose, Gómez, Jhon, Choi, Joseph, Baek, Stephen, Kim, Yusung, Ismael, Heba, Allen, Bryan, Buatti, John M, Kotrotsou, Aikaterini, Li, Hongwei, Weiss, Tobias, Weller, Michael, Bink, Andrea, Pouymayou, Bertrand, Shaykh, Hassan F, Saltz, Joel, Prasanna, Prateek, Shrestha, Sampurna, Mani, Kartik M, Payne, David, Kurc, Tahsin, Pelaez, Enrique, Franco-Maldonado, Heydy, Loayza, Francis, Quevedo, Sebastian, Guevara, Pamela, Torche, Esteban, Mendoza, Cristobal, Vera, Franco, Ríos, Elvis, López, Eduardo, Velastin, Sergio A, Ogbole, Godwin, Oyekunle, Dotun, Odafe-Oyibotha, Olubunmi, Osobu, Babatunde, Shu'aibu, Mustapha, Dorcas, Adeleye, Soneye, Mayowa, Dako, Farouk, Simpson, Amber L, Hamghalam, Mohammad, Peoples, Jacob J, Hu, Ricky, Tran, Anh, Cutler, Danielle, Moraes, Fabio Y, Boss, Michael A, Gimpel, James, Veettil, Deepak Kattil, Schmidt, Kendall, Bialecki, Brian, Marella, Sailaja, Price, Cynthia, Cimino, Lisa, Apgar, Charles, Shah, Prashant, Menze, Bjoern, Barnholtz-Sloan, Jill S, Martin, Jason, Bakas, Spyridon

Subject Terms: Computer Science - Machine Learning, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/2204.10836

A Deep Learning Pipeline for Automatic Skull Stripping and Brain Segmentation

Authors: Yogananda, Chandan Ganesh Bangalore, Wagner, Benjamin C., Murugesan, Gowtham K., Madhuranthakam, Ananth, Maldjian, Joseph A.

Source: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019) Biomedical Imaging (ISBI 2019), 2019 IEEE 16th International Symposium on. :727-731 Apr, 2019

Relation: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI)

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results

Authors: Mehta, Raghav, Filos, Angelos, Baid, Ujjwal, Sako, Chiharu, McKinley, Richard, Rebsamen, Michael, Datwyler, Katrin, Meier, Raphael, Radojewski, Piotr, Murugesan, Gowtham Krishnan, Nalawade, Sahil, Ganesh, Chandan, Wagner, Ben, Yu, Fang F., Fei, Baowei, Madhuranthakam, Ananth J., Maldjian, Joseph A., Daza, Laura, Gomez, Catalina, Arbelaez, Pablo, Dai, Chengliang, Wang, Shuo, Reynaud, Hadrien, Mo, Yuan-han, Angelini, Elsa, Guo, Yike, Bai, Wenjia, Banerjee, Subhashis, Pei, Lin-min, AK, Murat, Rosas-Gonzalez, Sarahi, Zemmoura, Ilyess, Tauber, Clovis, Vu, Minh H., Nyholm, Tufve, Lofstedt, Tommy, Ballestar, Laura Mora, Vilaplana, Veronica, McHugh, Hugh, Talou, Gonzalo Maso, Wang, Alan, Patel, Jay, Chang, Ken, Hoebel, Katharina, Gidwani, Mishka, Arun, Nishanth, Gupta, Sharut, Aggarwal, Mehak, Singh, Praveer, Gerstner, Elizabeth R., Kalpathy-Cramer, Jayashree, Boutry, Nicolas, Huard, Alexis, Vidyaratne, Lasitha, Rahman, Md Monibor, Iftekharuddin, Khan M., Chazalon, Joseph, Puybareau, Elodie, Tochon, Guillaume, Ma, Jun, Cabezas, Mariano, Llado, Xavier, Oliver, Arnau, Valencia, Liliana, Valverde, Sergi, Amian, Mehdi, Soltaninejad, Mohammadreza, Myronenko, Andriy, Hatamizadeh, Ali, Feng, Xue, Dou, Quan, Tustison, Nicholas, Meyer, Craig, Shah, Nisarg A., Talbar, Sanjay, Weber, Marc-Andre, Mahajan, Abhishek, Jakab, Andras, Wiest, Roland, Fathallah-Shaykh, Hassan M., Nazeri, Arash, Milchenko1, Mikhail, Marcus, Daniel, Kotrotsou, Aikaterini, Colen, Rivka, Freymann, John, Kirby, Justin, Davatzikos, Christos, Menze, Bjoern, Bakas, Spyridon, Gal, Yarin, Arbel, Tal

Source: Machine.Learning.for.Biomedical.Imaging. 1 (2022)

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2112.10074

Federated Learning for Brain Tumor Segmentation Using MRI and Transformers
7th International brain lesion workshop, MICCAI

Authors: Nalawade, Sahil, Ganesh, Chandan, Wagner, Ben, Reddy, Divya, Das, Yudhajit, Yu, Fang F., Fei, Baowei, Madhuranthakam, Ananth J., Maldjian, Joseph A.

Source: Lecture notes in computer science. 12963:444-454

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN607723927&indx=1&recIds=ETOCCN607723927

Disparity Autoencoders for Multi-class Brain Tumor Segmentation
7th International brain lesion workshop, MICCAI

Authors: Yogananda, Chandan Ganesh Bangalore, Das, Yudhajit, Wagner, Benjamin C., Nalawade, Sahil S., Reddy, Divya, Holcomb, James, Pinho, Marco C., Fei, Baowei, Madhuranthakam, Ananth J., Maldjian, Joseph A.

Source: Lecture notes in computer science. 12963:116-124

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN607723641&indx=1&recIds=ETOCCN607723641

Changes in resting state MRI networks from a single season of football distinguishes controls, low, and high head impact exposure

Authors: Murugesan, Gowtham, Famili, Afarin, Davenport, Elizabeth, Wagner, Ben, Urban, Jillian, Kelley, Mireille, Jones, Derek, Whitlow, Christopher, Stitzel, Joel, Maldjian, Joseph, Montillo, Albert

Source: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017) Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on. :464-467 Apr, 2017

Relation: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017)

ELectronic Archimedes spiral Neural Network (ELANN)

Authors: Holcomb, James M., Maldjian, Joseph A., Xi, Yin, O'Suilleabhain, Padraig E., Louis, Elan D., Shah, Bhavya R.

Source: In Parkinsonism and Related Disorders October 2023 115

Novidades em radiologia: arterial spin labeling, a perfusão por RM sem contraste

Authors: Gonçalves, Fabrício Guimarães, Maldjian, Joseph A.

Source: Radiologia Brasileira. February 2011 44(1)

File Description: text/html

Access URL: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-39842011000100003

Multidimensional and Multiresolution Ensemble Networks for Brain Tumor Segmentation
6th International workshop on Brainlesion, online

Authors: Murugesan, Gowtham Krishnan, Nalawade, Sahil, Ganesh, Chandan, Wagner, Ben, Yu, Fang F., Fei, Baowei, Madhuranthakam, Ananth J., Maldjian, Joseph A.

Source: Lecture notes in computer science. 12658:448-457

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606802399&indx=1&recIds=ETOCCN606802399

Cumulative strain-based metrics for predicting subconcussive head impact exposure—related imaging changes in a cohort of American youth football players

Authors: Miller, Logan E., Urban, Jillian E., Espeland, Mark A., Walkup, Michael P., Holcomb, James M., Davenport, Elizabeth M., Powers, Alexander K., Whitlow, Christopher T., Maldjian, Joseph A., Stitzel, Joel D.

Source: Journal of neurosurgery.Pediatrics. 29(4):387-396

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN628907017&indx=1&recIds=ETOCRN628907017

The striatal matrix compartment is expanded in autism spectrum disorder.

Authors: Waugh, Jeff L., Hassan, Asim O. A., Funk, Adrian T., Maldjian, Joseph A.

Source: Journal of Neurodevelopmental Disorders; 2/15/2025, Vol. 17 Issue 1, p1-18, 18p

Subject Terms: AUTISM spectrum disorders, DIFFUSION tensor imaging, MEDICAL sciences, AUTISM, NEUROSCIENCES

A Novel Hierarchical Level Set with AR-boost for White Matter Lesion Segmentation in Diabetes

Authors: Saha, Baidya N., Natarajan, Sriraam, Kota, Gopi, Whitlow, Christopher T., Bowden, Donald, Divers, Jasmin, Freedman, Barry I., Maldjian, Joseph A.

Source: 2012 11th International Conference on Machine Learning and Applications Machine Learning and Applications (ICMLA), 2012 11th International Conference on. 1:90-95 Dec, 2012

Relation: 2012 Eleventh International Conference on Machine Learning and Applications (ICMLA)

A Machine Learning Pipeline for Three-Way Classification of Alzheimer Patients from Structural Magnetic Resonance Images of the Brain

Authors: Natarajan, Sriraam, Joshi, Saket, Saha, Baidya N., Edwards, Adam, Khot, Tushar, Moody, Elizabeth, Kersting, Kristian, Whitlow, Christopher T., Maldjian, Joseph A.

Source: 2012 11th International Conference on Machine Learning and Applications Machine Learning and Applications (ICMLA), 2012 11th International Conference on. 1:203-208 Dec, 2012

Relation: 2012 Eleventh International Conference on Machine Learning and Applications (ICMLA)

Fully Automated Brain Tumor Segmentation and Survival Prediction of Gliomas Using Deep Learning and MRI
5th Brain-lesion (International workshop)

Authors: Yogananda, Chandan Ganesh Bangalore, Wagner, Ben, Nalawade, Sahil S., Murugesan, Gowtham K., Pinho, Marco C., Fei, Baowei, Madhuranthakam, Ananth J., Maldjian, Joseph A.

Source: Lecture notes in computer science. 11993:99-112

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606166483&indx=1&recIds=ETOCCN606166483

Multidimensional and Multiresolution Ensemble Networks for Brain Tumor Segmentation
5th Brain-lesion (International workshop)

Authors: Murugesan, Gowtham Krishnan, Nalawade, Sahil, Ganesh, Chandan, Wagner, Ben, Yu, Fang F., Fei, Baowei, Madhuranthakam, Ananth J., Maldjian, Joseph A.

Source: Lecture notes in computer science. 11993:148-157

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606166525&indx=1&recIds=ETOCCN606166525

MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks

Authors: Treacher, Alex H., Garg, Prabhat, Davenport, Elizabeth, Godwin, Ryan, Proskovec, Amy, Bezerra, Leonardo Guimaraes, Murugesan, Gowtham, Wagner, Ben, Whitlow, Christopher T., Stitzel, Joel D., Maldjian, Joseph A., Montillo, Albert A.

Source: In NeuroImage 1 November 2021 241

Analysis of longitudinal head impact exposure and white matter integrity in returning youth football players

Authors: Kelley, Mireille E., Urban, Jillian E., Jones, Derek A., Davenport, Elizabeth M., Miller, Logan E., Snively, Beverly M., Powers, Alexander K., Whitlow, Christopher T., Maldjian, Joseph A., Stitzel, Joel D.

Source: Journal of neurosurgery.Pediatrics. 28(2):196-205

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN627168225&indx=1&recIds=ETOCRN627168225

Mapping default mode connectivity alterations following a single season of subconcussive impact exposure in youth football

Authors: DeSimone, Jesse C., Davenport, Elizabeth M., Urban, Jillian, Xi, Yin, Holcomb, James M., Kelley, Mireille E., Whitlow, Christopher T., Powers, Alexander K., Stitzel, Joel D., Maldjian, Joseph A.

Source: Human brain mapping. 42(8):2529-2545

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100121162135.0x000001&indx=1&recIds=ETOCvdc_100121162135.0x000001

Regional White Matter Diffusion Changes Associated with the Cumulative Tensile Strain and Strain Rate in Nonconcussed Youth Football Players

Authors: Holcomb, James M., Fisicaro, Ryan A., Miller, Logan E., Yu, Fang F., Davenport, Elizabeth M., Xi, Yin, Urban, Jillian E., Wagner, Ben C., Powers, Alexander K., Whitlow, Christopher T., Stitzel, Joel D., Maldjian, Joseph A.

Source: Journal of neurotrauma. 38(19):2763-2771

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131299085.0x000001&indx=1&recIds=ETOCvdc_100131299085.0x000001