Identification of a specific APOE transcript and functional elements associated with Alzheimer’s disease

Authors: Qiang Chen, Luis Aguirre, Guoming Liang, Huanhuan Zhao, Tao Dong, Felix Borrego, Itziar de Rojas, Qichan Hu, Christopher Reyes, Ling-Yan Su, Bao Zhang, James D. Lechleiter, Harald H. H. Göring, Philip L. De Jager, Joel E. Kleinman, Thomas M. Hyde, Pan P. Li, Agustín Ruiz, Daniel R. Weinberger, Sudha Seshadri, Liang Ma

Source: Molecular Neurodegeneration, Vol 19, Iss 1, Pp 1-18 (2024)

Subject Terms: APOE, Alzheimer’s disease, Transcript, Postmortem brain, SNP, Neurology. Diseases of the nervous system, RC346-429, Geriatrics, RC952-954.6

File Description: electronic resource

Relation: https://doaj.org/toc/1750-1326

Access URL: https://doaj.org/article/5374844758ed40dc95d178d7f3ae89ee

Antarctic Space Weather Data Managed by IPS Radio and Space Services of Australia

Authors: K Wang, D Neudegg, C Yuile, M Terkildsen, R Marshall, M Hyde, G Patterson, C Thomson, A Kelly, Y Tian

Source: Data Science Journal, Vol 13 (2014)

Subject Terms: Antarctic, Space weather, Ionospheric, Magnetometer, Riometer, Data management, AWK, jqPlot, Science (General), Q1-390

File Description: electronic resource

Relation: http://datascience.codata.org/articles/25; https://doaj.org/toc/1683-1470

Access URL: https://doaj.org/article/5789d796be304fd7980acbce9bb6d51d

Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus

Authors: Kynon J. M. Benjamin, Ria Arora, Arthur S. Feltrin, Geo Pertea, Hunter H. Giles, Joshua M. Stolz, Laura D’Ignazio, Leonardo Collado-Torres, Joo Heon Shin, William S. Ulrich, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Apuã C. M. Paquola, Jennifer A. Erwin

Source: Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/47464cd135894227b475555e891742ed

Dopamine signaling enriched striatal gene set predicts striatal dopamine synthesis and physiological activity in vivo

Authors: Leonardo Sportelli, Daniel P. Eisenberg, Roberta Passiatore, Enrico D’Ambrosio, Linda A. Antonucci, Jasmine S. Bettina, Qiang Chen, Aaron L. Goldman, Michael D. Gregory, Kira Griffiths, Thomas M. Hyde, Joel E. Kleinman, Antonio F. Pardiñas, Madhur Parihar, Teresa Popolizio, Antonio Rampino, Joo Heon Shin, Mattia Veronese, William S. Ulrich, Caroline F. Zink, Alessandro Bertolino, Oliver D. Howes, Karen F. Berman, Daniel R. Weinberger, Giulio Pergola

Source: Nature Communications, Vol 15, Iss 1, Pp 1-19 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/bdf3671448254ff98814912fb8b64f61

Human archetypal pluripotent stem cells differentiate into trophoblast stem cells via endogenous BMP5/7 induction without transitioning through naive state

Authors: Ethan Tietze, Andre Rocha Barbosa, Bruno Araujo, Veronica Euclydes, Bailey Spiegelberg, Hyeon Jin Cho, Yong Kyu Lee, Yanhong Wang, Alejandra McCord, Alan Lorenzetti, Arthur Feltrin, Joyce van de Leemput, Pasquale Di Carlo, Gianluca Ursini, Kynon J. Benjamin, Helena Brentani, Joel E. Kleinman, Thomas M. Hyde, Daniel R. Weinberger, Ronald McKay, Joo Heon Shin, Tomoyo Sawada, Apua C. M. Paquola, Jennifer A. Erwin

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-15 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/6bb7441979f6437cb464f3a0916c266a

Predicting lameness in dairy cattle using untargeted liquid chromatography–mass spectrometry-based metabolomics and machine learning

Authors: Laura V. Randall, Dong-Hyun Kim, Salah M.A. Abdelrazig, Nicola J. Bollard, Heather Hemingway-Arnold, Robert M. Hyde, Jake S. Thompson, Martin J. Green

Source: Journal of Dairy Science, Vol 106, Iss 10, Pp 7033-7042 (2023)

Subject Terms: liquid chromatography–mass spectrometry-based metabolomics, machine learning, lameness, dairy cattle, Dairy processing. Dairy products, SF250.5-275, Dairying, SF221-250

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S002203022300423X; https://doaj.org/toc/0022-0302

Access URL: https://doaj.org/article/e0e426bf9c5243e4bba6f5d6c92922d4

Implementing a cirrhosis order set in a tertiary healthcare system: a theory-informed formative evaluation

Authors: A. M. Hyde, E. Johnson, T. Luig, D. Schroeder, M. Carbonneau, D. Campbell-Scherer, P. Tandon

Source: BMC Health Services Research, Vol 23, Iss 1, Pp 1-12 (2023)

Subject Terms: Order set, Implementation, Formative evaluation, Implementation theory, Cirrhosis, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/1472-6963

Access URL: https://doaj.org/article/bd6288a4ff904f6d9a2c46fbd2245c0c

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

Authors: Lukas M Weber, Heena R Divecha, Matthew N Tran, Sang Ho Kwon, Abby Spangler, Kelsey D Montgomery, Madhavi Tippani, Rahul Bharadwaj, Joel E Kleinman, Stephanie C Page, Thomas M Hyde, Leonardo Collado-Torres, Kristen R Maynard, Keri Martinowich, Stephanie C Hicks

Source: eLife, Vol 12 (2024)

Subject Terms: locus coeruleus, norepinephrine, spatially-resolved transcriptomics, single-nucleus RNA-sequencing, postmortem human tissue, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/84628; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/5535bef8bfda4d938789135e8f5f9d86

SUFI: an automated approach to spectral unmixing of fluorescent multiplex images captured in mouse and post-mortem human brain tissues

Authors: Vijay Sadashivaiah, Madhavi Tippani, Stephanie C. Page, Sang Ho Kwon, Svitlana V. Bach, Rahul A. Bharadwaj, Thomas M. Hyde, Joel E. Kleinman, Andrew E. Jaffe, Kristen R. Maynard

Source: BMC Neuroscience, Vol 24, Iss 1, Pp 1-20 (2023)

Subject Terms: Linear unmixing, Multispectral imaging, Spectral unmixing, Automatic unmixing, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571, Neurophysiology and neuropsychology, QP351-495

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2202

Access URL: https://doaj.org/article/0dfa134e9c79402a844b850026892a27

Investigating trait variability of gene co-expression network architecture in brain by controlling for genomic risk of schizophrenia.

Authors: Eugenia Radulescu, Qiang Chen, Giulio Pergola, Pasquale Di Carlo, Shizhong Han, Joo Heon Shin, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger

Source: PLoS Genetics, Vol 19, Iss 10, p e1010989 (2023)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1010989&type=printable; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/5b4e1686789a4b1b9371751ae2a7254d

Chronic traumatic encephalopathy neuropathologic change is uncommon in men who played amateur American football

Authors: Grant L. Iverson, Pouya Jamshidi, Amanda O. Fisher-Hubbard, Amy Deep-Soboslay, Thomas M. Hyde, Joel E. Kleinman, Joyce L. deJong, Claire E. Shepherd, Lili-Naz Hazrati, Rudolph J. Castellani

Source: Frontiers in Neurology, Vol 14 (2023)

Subject Terms: neuropathology, tau, suicide, autopsy, depression, Neurology. Diseases of the nervous system, RC346-429

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fneur.2023.1143882/full; https://doaj.org/toc/1664-2295

Access URL: https://doaj.org/article/857b1001775f471c9183059d1508598a

The effect of environmental temperature on average daily gain in preweaned calves: A randomized controlled trial and Bayesian analysis

Authors: Robert M. Hyde, Martin J. Green, Chris Hudson, Peter M. Down

Source: Journal of Dairy Science, Vol 105, Iss 4, Pp 3430-3439 (2022)

Subject Terms: average daily gain, calf, heat, jacket, temperature, Dairy processing. Dairy products, SF250.5-275, Dairying, SF221-250

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022030222000601; https://doaj.org/toc/0022-0302

Access URL: https://doaj.org/article/12ea06d901c74776be48a5d3858cf91f

Improving growth rates in preweaning calves on dairy farms: A randomized controlled trial

Authors: Robert M. Hyde, Martin J. Green, Chris Hudson, Peter M. Down

Source: Journal of Dairy Science, Vol 105, Iss 1, Pp 782-792 (2022)

Subject Terms: randomized controlled trial, calf health, daily live weight gain, average daily gain, Dairy processing. Dairy products, SF250.5-275, Dairying, SF221-250

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022030221009991; https://doaj.org/toc/0022-0302

Access URL: https://doaj.org/article/aee81c626e0a442abe0d60f57a01b840

VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data

Authors: Madhavi Tippani, Heena R. Divecha, Joseph L. Catallini, Sang H. Kwon, Lukas M. Weber, Abby Spangler, Andrew E. Jaffe, Thomas M. Hyde, Joel E. Kleinman, Stephanie C. Hicks, Keri Martinowich, Leonardo Collado-Torres, Stephanie C. Page, Kristen R. Maynard

Source: Biological Imaging, Vol 3 (2023)

Subject Terms: hematoxylin and eosin, immunofluorescence, MATLAB, segmentation, spatially resolved transcriptomics, Visium, Visium-Spatial Proteogenomics, Biology (General), QH301-705.5, Medical technology, R855-855.5

File Description: electronic resource

Relation: https://www.cambridge.org/core/product/identifier/S2633903X23000235/type/journal_article; https://doaj.org/toc/2633-903X

Access URL: https://doaj.org/article/7340b1102c004b1bb09838cdf6156fe8

Personal Reflections on the Life of Hans Jørgen Gottlieb Gundersen

Authors: John F. Bertram, Luis M. Cruz-Orive, Stephen M. Evans, Dallas M. Hyde, Terry Mayhew, Matthias Ochs, Yong Tang, Jens Randel Nyengaard

Source: Image Analysis and Stereology, Vol 40, Iss 2, Pp 49-61 (2021)

Subject Terms: hans jørgen gottlieb gundersen, Medicine (General), R5-920, Mathematics, QA1-939

File Description: electronic resource

Relation: https://www.ias-iss.org/ojs/IAS/article/view/2596; https://doaj.org/toc/1580-3139; https://doaj.org/toc/1854-5165

Access URL: https://doaj.org/article/4a8ffa5daef547398722f1aaf72e845d

MCP-1/CCR2 axis inhibition sensitizes the brain microenvironment against melanoma brain metastasis progression

Authors: Sabina Pozzi, Anna Scomparin, Dikla Ben-Shushan, Eilam Yeini, Paula Ofek, Alessio D. Nahmad, Shelly Soffer, Ariel Ionescu, Antonella Ruggiero, Adi Barzel, Henry Brem, Thomas M. Hyde, Iris Barshack, Sanju Sinha, Eytan Ruppin, Tomer Weiss, Asaf Madi, Eran Perlson, Inna Slutsky, Helena F. Florindo, Ronit Satchi-Fainaro

Source: JCI Insight, Vol 7, Iss 17 (2022)

Subject Terms: Oncology, Therapeutics, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2379-3708

Access URL: https://doaj.org/article/7d80f87848d14503bacd860b5076b699

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Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex

Authors: Kira A. Perzel Mandell, Amanda J. Price, Richard Wilton, Leonardo Collado-Torres, Ran Tao, Nicholas J. Eagles, Alexander S. Szalay, Thomas M. Hyde, Daniel R. Weinberger, Joel E. Kleinman, Andrew E. Jaffe

Source: Epigenetics, Vol 16, Iss 1, Pp 1-13 (2021)

Subject Terms: dna methylation, brain development, prenatal development, whole-genome bisulfite sequencing, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1559-2294; https://doaj.org/toc/1559-2308

Access URL: https://doaj.org/article/9d2f67fe0cdb440683b79a5c5544e87c

Predictors of multimorbidity among the Kurdish population living in the Northwest of Iran

Authors: N. Aminisani, L. Rastgou, S. M. Shamshirgaran, P. Sarbakhsh, S. Ghaderi, M. Hyde

Source: BMC Public Health, Vol 20, Iss 1, Pp 1-8 (2020)

Subject Terms: Multimorbidity, Prevalence, Ethnic groups, Diabetes mellitus, Chronic disease, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12889-020-09214-2; https://doaj.org/toc/1471-2458

Access URL: https://doaj.org/article/892f40a3bc8e4f24b59145ced2ccf35c

Differential expression of NPAS4 in the dorsolateral prefrontal cortex following opioid overdose

Authors: David W. Sosnowski, Andrew E. Jaffe, Ran Tao, Amy Deep-Soboslay, Chang Shu, Sarven Sabunciyan, Joel E. Kleinman, Thomas M. Hyde, Brion S. Maher

Source: Drug and Alcohol Dependence Reports, Vol 3, Iss , Pp 100040- (2022)

Subject Terms: Medicine

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S277272462200018X; https://doaj.org/toc/2772-7246

Access URL: https://doaj.org/article/40d7dc8891164eaaa2850a7f37ad1c2f