Source attribution of human Campylobacter infection: a multi-country model in the European Union

Authors: Cecilie Thystrup, Maja Lykke Brinch, Clementine Henri, Lapo Mughini-Gras, Eelco Franz, Kinga Wieczorek, Montserrat Gutierrez, Deirdre M. Prendergast, Geraldine Duffy, Catherine M. Burgess, Declan Bolton, Julio Alvarez, Vicente Lopez-Chavarrias, Thomas Rosendal, Lurdes Clemente, Ana Amaro, Aldert L. Zomer, Katrine Grimstrup Joensen, Eva Møller Nielsen, Gaia Scavia, Magdalena Skarżyńska, Miguel Pinto, Mónica Oleastro, Wonhee Cha, Amandine Thépault, Katell Rivoal, Martine Denis, Marianne Chemaly, Tine Hald

Source: Frontiers in Microbiology, Vol 16 (2025)

Subject Terms: source attribution, foodborne disease, campylobacteriosis, machine learning, European union, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2025.1519189/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/0a73a109105941199cedd6ac01e30423

First comparative genomic characterization of the MSSA ST398 lineage detected in aquaculture and other reservoirs

Authors: Vanessa Salgueiro, Vera Manageiro, Narcisa M. Bandarra, Eugénia Ferreira, Lurdes Clemente, Manuela Caniça

Source: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: Staphylococcus aureus, ST398, WGS, animals, humans, resistome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1035547/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/757d7296325c4aa38ad06c366464dfcf

Genetic Diversity of Salmonella enterica subsp. enterica Serovar Enteritidis from Human and Non-Human Sources in Portugal

Authors: Célia Leão, Leonor Silveira, Ana Usié, Joana Gião, Lurdes Clemente, Patricia Themudo, Ana Amaro, Angela Pista

Source: Pathogens, Vol 13, Iss 2, p 112 (2024)

Subject Terms: salmonellosis, foodborne, pathogenicity, one health, WGS, Medicine

File Description: electronic resource

Relation: https://www.mdpi.com/2076-0817/13/2/112; https://doaj.org/toc/2076-0817

Access URL: https://doaj.org/article/dce523f77a9f4fc5ab700edb8d850151

Building an International One Health Strain Level Database to Characterise the Epidemiology of AMR Threats: ESBL—AmpC Producing E. coli as An Example—Challenges and Perspectives

Authors: Sara Perestrelo, Ana Amaro, Michael S. M. Brouwer, Lurdes Clemente, Ana Sofia Ribeiro Duarte, Annemarie Kaesbohrer, Renata Karpíšková, Vicente Lopez-Chavarrias, Dearbháile Morris, Deirdre Prendergast, Angela Pista, Leonor Silveira, Magdalena Skarżyńska, Rosemarie Slowey, Kees T. Veldman, Magdalena Zając, Catherine Burgess, Julio Alvarez

Source: Antibiotics, Vol 12, Iss 3, p 552 (2023)

Subject Terms: Escherichia coli, extended-spectrum beta-lactamase (ESBL), AmpC beta-lactamase (AmpC), One Health, monitoring, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/12/3/552; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/c0d2d07b48e5413c957a3f94e19ba493

Emergence and Clonal Spread of CTX-M-65-Producing Escherichia coli From Retail Meat in Portugal

Authors: Célia Leão, Lurdes Clemente, Laura Moura, Anne Mette Seyfarth, Inge M. Hansen, Rene S. Hendriksen, Ana Amaro

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: Escherichia coli, retail meat, ESBL, WGS, CTX-M-65, chromosome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.653595/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/954ff0b04d544cb7aea3bc106b7f7eb8

Emergence of Cfr-Mediated Linezolid Resistance among Livestock-Associated Methicillin-Resistant Staphylococcus aureus (LA-MRSA) from Healthy Pigs in Portugal

Authors: Célia Leão, Lurdes Clemente, Maria Cara d’Anjo, Teresa Albuquerque, Ana Amaro

Source: Antibiotics, Vol 11, Iss 10, p 1439 (2022)

Subject Terms: LA-MRSA, pigs, linezolid resistance, cfr gene, WGS, ST398, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/11/10/1439; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/9bdcdc804d59408b9f68e39586dd18bd

Antibiotic Susceptibility Profiles and Resistance Mechanisms to β-Lactams and Polymyxins of Escherichia coli from Broilers Raised under Intensive and Extensive Production Systems

Authors: Mariana Ferreira, Célia Leão, Lurdes Clemente, Teresa Albuquerque, Ana Amaro

Source: Microorganisms, Vol 10, Iss 10, p 2044 (2022)

Subject Terms: antibiotic resistance, Escherichia coli, broiler production systems, ESBL/AmpC β-lactamases, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/10/10/2044; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/85f883cecc644a759b7291df0c7c6d7d

Antimicrobial Susceptibility of Enterococcus Isolates from Cattle and Pigs in Portugal: Linezolid Resistance Genes optrA and poxtA

Authors: Joana Gião, Célia Leão, Teresa Albuquerque, Lurdes Clemente, Ana Amaro

Source: Antibiotics, Vol 11, Iss 5, p 615 (2022)

Subject Terms: Enterococcus spp., pigs, cattle, Linezolid resistance, optrA gene, WGS, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/11/5/615; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/14164ff999264e2195c353d18ccfadaa

Prevalence and Characterization of ESBL/AmpC Producing Escherichia coli from Fresh Meat in Portugal

Authors: Lurdes Clemente, Célia Leão, Laura Moura, Teresa Albuquerque, Ana Amaro

Source: Antibiotics, Vol 10, Iss 11, p 1333 (2021)

Subject Terms: antimicrobial resistance, Escherichia coli, meat, ESBL/AmpC, mcr genes, PMQR, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/10/11/1333; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/23e011e878894df19c122ef090afb90f

Genetic Relatedness and Diversity of Staphylococcus aureus from Different Reservoirs: Humans and Animals of Livestock, Poultry, Zoo, and Aquaculture

Authors: Vanessa Salgueiro, Vera Manageiro, Narcisa M. Bandarra, Eugénia Ferreira, Lurdes Clemente, Manuela Caniça

Source: Microorganisms, Vol 8, Iss 9, p 1345 (2020)

Subject Terms: MRSA, ST398, Portugal, animals, human isolates, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/8/9/1345; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/d3c4e6276e93408ca5ed96d0d122688c

IncX4 Plasmid Carrying the New mcr-1.9 Gene Variant in a CTX-M-8-Producing Escherichia coli Isolate Recovered From Swine

Authors: Vera Manageiro, Lurdes Clemente, Raquel Romão, Catarina Silva, Luís Vieira, Eugénia Ferreira, Manuela Caniça

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: MCR-1.9, plasmid-mediated colistin resistance, IncX4, CTX-M-8, Portugal, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.00367/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/c3e5bef9358340f78cc9b8e9bf28d7b2

CTX-M-15–Producing Escherichia coli in Dolphin, Portugal

Authors: Vera Manageiro, Lurdes Clemente, Daniela Jones-Dias, Teresa Albuquerque, Eugénia Ferreira, Manuela Caniça

Source: Emerging Infectious Diseases, Vol 21, Iss 12, Pp 2249-2251 (2015)

Subject Terms: Escherichia coli, dolphin, CTX-M-15, fimH30, bacteria, Portugal, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/21/12/14-1963_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/d717e105032d4db98f9947f9c6116101

Draft genomic analysis of an avian multidrug resistant Morganella morganii isolate carrying qnrD1

Authors: Daniela Jones-Dias, Lurdes Clemente, Inês Barata Moura, Daniel Ataíde Sampaio, Teresa Albuquerque, Luís Vieira, Vera Manageiro, Manuela Caniça

Source: Frontiers in Microbiology, Vol 7 (2016)

Subject Terms: Morganella morganii, multidrug resistance, Plasmid, WGS, qnrD1, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.01660/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/db8d9ec63d7342879cccdd0bb98025cb

Salmonella Enteritidis isolate harboring multiple efflux pumps and pathogenicity factors, shows absence of O antigen polymerase gene

Authors: Daniela Jones-Dias, Lurdes Clemente, Conceicao Egas, Hugo Froufe, Daniel Ataíde Sampaio, Luís Vieira, Maria Fookes, Nicholas R. Thomson, Vera Manageiro, Manuela Caniça

Source: Frontiers in Microbiology, Vol 7 (2016)

Subject Terms: Epidemiology, Salmonella enteritidis, pathogenicity factors, MGE, Omphalitis, wzy deletion, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.01130/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/5632e8693fa848cc99a02b2e6bf92011