A comparative analysis of planarian genomes reveals regulatory conservation in the face of rapid structural divergence

Authors: Mario Ivanković, Jeremias N. Brand, Luca Pandolfini, Thomas Brown, Martin Pippel, Andrei Rozanski, Til Schubert, Markus A. Grohme, Sylke Winkler, Laura Robledillo, Meng Zhang, Azzurra Codino, Stefano Gustincich, Miquel Vila-Farré, Shu Zhang, Argyris Papantonis, André Marques, Jochen C. Rink

Source: Nature Communications, Vol 15, Iss 1, Pp 1-21 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/6f8e70a27e1440d2888957da8b34e323

LINE-1 regulates cortical development by acting as long non-coding RNAs

Authors: Damiano Mangoni, Alessandro Simi, Pierre Lau, Alexandros Armaos, Federico Ansaloni, Azzurra Codino, Devid Damiani, Lavinia Floreani, Valerio Di Carlo, Diego Vozzi, Francesca Persichetti, Claudio Santoro, Luca Pandolfini, Gian Gaetano Tartaglia, Remo Sanges, Stefano Gustincich

Source: Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/66f2f44858894eb082807efecd36e486

SINEUP non-coding RNA activity depends on specific N6-methyladenosine nucleotides

Authors: Bianca Pierattini, Sabrina D’Agostino, Carlotta Bon, Omar Peruzzo, Andrej Alendar, Azzurra Codino, Gloria Ros, Francesca Persichetti, Remo Sanges, Piero Carninci, Claudio Santoro, Stefano Espinoza, Paola Valentini, Luca Pandolfini, Stefano Gustincich

Source: Molecular Therapy: Nucleic Acids, Vol 32, Iss , Pp 402-414 (2023)

Subject Terms: MT: Non-coding RNAs, SINEUP, lncRNA, RNA therapeutics, m6A, N6-methyladenosine, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2162253123000884; https://doaj.org/toc/2162-2531

Access URL: https://doaj.org/article/439e7dc3410e4a769903132bc7c5d494

Towards SINEUP-based therapeutics: Design of an in vitro synthesized SINEUP RNA

Authors: Paola Valentini, Bianca Pierattini, Elsa Zacco, Damiano Mangoni, Stefano Espinoza, Natalie A. Webster, Byron Andrews, Piero Carninci, Gian Gaetano Tartaglia, Luca Pandolfini, Stefano Gustincich

Source: Molecular Therapy: Nucleic Acids, Vol 27, Iss , Pp 1092-1102 (2022)

Subject Terms: SINEUPs, RNA modifications, in vitro transcription, RNA therapeutics, DJ-1, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2162253122000269; https://doaj.org/toc/2162-2531

Access URL: https://doaj.org/article/a464e6b7573848c49f5c81e1322c029f

RNA modifications detection by comparative Nanopore direct RNA sequencing

Authors: Adrien Leger, Paulo P. Amaral, Luca Pandolfini, Charlotte Capitanchik, Federica Capraro, Valentina Miano, Valentina Migliori, Patrick Toolan-Kerr, Theodora Sideri, Anton J. Enright, Konstantinos Tzelepis, Folkert J. van Werven, Nicholas M. Luscombe, Isaia Barbieri, Jernej Ule, Tomas Fitzgerald, Ewan Birney, Tommaso Leonardi, Tony Kouzarides

Source: Nature Communications, Vol 12, Iss 1, Pp 1-17 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/b763993df55a44c68f28be519d53614f

MicroRNAs regulatory networks governing the epigenetic landscape of MEN1 gastro‐entero‐pancreatic neuroendocrine tumor: A case report

Authors: Ettore Luzi, Luca Pandolfini, Simone Ciuffi, Francesca Marini, Federico Cremisi, Gabriella Nesi, Maria Luisa Brandi

Source: Clinical and Translational Medicine, Vol 11, Iss 4, Pp n/a-n/a (2021)

Subject Terms: Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/2001-1326

Access URL: https://doaj.org/article/b91c75839ad4433cafe6f7c4cdec62e7

The microRNA miR-21 Is a Mediator of FGF8 Action on Cortical COUP-TFI Translation

Authors: Marco Terrigno, Michele Bertacchi, Luca Pandolfini, Mario Baumgart, Mariantonietta Calvello, Alessandro Cellerino, Michèle Studer, Federico Cremisi

Source: Stem Cell Reports, Vol 11, Iss 3, Pp 756-769 (2018)

Subject Terms: Medicine (General), R5-920, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213671118303230; https://doaj.org/toc/2213-6711

Access URL: https://doaj.org/article/b11488878b02443ca5918eaa28bd7859

Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

Authors: Paulo P. Amaral, Tommaso Leonardi, Namshik Han, Emmanuelle Viré, Dennis K. Gascoigne, Raúl Arias-Carrasco, Magdalena Büscher, Luca Pandolfini, Anda Zhang, Stefano Pluchino, Vinicius Maracaja-Coutinho, Helder I. Nakaya, Martin Hemberg, Ramin Shiekhattar, Anton J. Enright, Tony Kouzarides

Source: Genome Biology, Vol 19, Iss 1, Pp 1-21 (2018)

Subject Terms: lncRNAs, Development, Chromatin architecture, Topology, Zinc finger, Cancer, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-018-1405-5; https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/ba55c45d1fc5416e815d876c54e498ef

Activin/Nodal Signaling Supports Retinal Progenitor Specification in a Narrow Time Window during Pluripotent Stem Cell Neuralization

Authors: Michele Bertacchi, Giuseppe Lupo, Luca Pandolfini, Simona Casarosa, Mara D’Onofrio, Roger A. Pedersen, William A. Harris, Federico Cremisi

Source: Stem Cell Reports, Vol 5, Iss 4, Pp 532-545 (2015)

Subject Terms: Medicine (General), R5-920, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213671115002453; https://doaj.org/toc/2213-6711

Access URL: https://doaj.org/article/3e650a27161a4010b717039edbea4010

Assessment of antibody library diversity through next generation sequencing and technical error compensation.

Authors: Marco Fantini, Luca Pandolfini, Simonetta Lisi, Michele Chirichella, Ivan Arisi, Marco Terrigno, Martina Goracci, Federico Cremisi, Antonino Cattaneo

Source: PLoS ONE, Vol 12, Iss 5, p e0177574 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5432181?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/ddd7fa5c0df64144835ff6ab16de9166

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