Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data

Authors: Zengmiao Wang, Peng Yang, Ruixue Wang, Luca Ferretti, Lele Zhao, Shan Pei, Xiaoli Wang, Lei Jia, Daitao Zhang, Yonghong Liu, Ziyan Liu, Quanyi Wang, Christophe Fraser, Huaiyu Tian

Source: Nature Communications, Vol 15, Iss 1, Pp 1-8 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7c71c8a52227433da7b88edb56593322

In vitro phenotypic characterisation of two genotype I African swine fever viruses with genomic deletion isolated from Sardinian wild boars

Authors: Giulia Franzoni, Mariangela S. Fiori, Lorena Mura, Tania Carta, Antonello Di Nardo, Matteo Floris, Luca Ferretti, Susanna Zinellu, Pier Paolo Angioi, Anna Maria Sechi, Francesca Carusillo, Diego Brundu, Manlio Fadda, Riccardo Bazzardi, Monica Giammarioli, Stefano Cappai, Silvia Dei Giudici, Annalisa Oggiano

Source: Veterinary Research, Vol 55, Iss 1, Pp 1-12 (2024)

Subject Terms: African swine fever virus, wild boar, macrophages, cytokines, genomic deletion, sequencing, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: https://doaj.org/toc/1297-9716

Access URL: https://doaj.org/article/08ef31019eaf42168eca98915cc71372

Plant Viruses, Viroids and Phytoplasmas: Insight into Evolutionary, Pathogenicity, and Epidemiology Studies

Authors: Luca Ferretti, Anna Taglienti

Source: Plants, Vol 14, Iss 4, p 551 (2025)

Subject Terms: n/a, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/14/4/551; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/ba8a9b7f305844c093e04b065c78ef12

An Evaluation of Organic Biostimulants as a Tool for the Sustainable Management of Viral Infections in Zucchini Plants

Authors: Carla Libia Corrado, Livia Donati, Anna Taglienti, Luca Ferretti, Francesco Faggioli, Massimo Reverberi, Sabrina Bertin

Source: Horticulturae, Vol 10, Iss 11, p 1176 (2024)

Subject Terms: zucchini yellow mosaic virus, potyvirus, Cucurbitaceae, plant fitness, plant defence pathways, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.mdpi.com/2311-7524/10/11/1176; https://doaj.org/toc/2311-7524

Access URL: https://doaj.org/article/00d67f7a6cdf4671958ced688867bb90

Canine Distemper Virus in Sardinia, Italy: Detection and Phylogenetic Analysis in Foxes

Authors: Elisabetta Coradduzza, Fiori Mariangela Stefania, Davide Pintus, Luca Ferretti, Alice Ledda, Gian Simone Chessa, Angela Maria Rocchigiani, Giada Lostia, Renata Rossi, Maria Giovanna Cancedda, Simona Macciocu, Marcella Cherchi, Daniele Denurra, Antonio Pintore, Roberto Bechere, Flavia Pudda, Marco Muzzeddu, Maria Antonietta Dettori, Angelo Ruiu, Paolo Briguglio, Ciriaco Ligios, Giantonella Puggioni

Source: Animals, Vol 14, Iss 21, p 3134 (2024)

Subject Terms: canine morbillivirus, Vulpes vulpes ichnusae, lineage, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/14/21/3134; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/3e35bc73c6f9412a9f72505166452f35

Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year

Authors: Michelle Kendall, Daphne Tsallis, Chris Wymant, Andrea Di Francia, Yakubu Balogun, Xavier Didelot, Luca Ferretti, Christophe Fraser

Source: Nature Communications, Vol 14, Iss 1, Pp 1-10 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/1aa54d2708754ae6a3d8e45134e89526

Correction: Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Authors: Helen R Fryer, Tanya Golubchik, Matthew Hall, Christophe Fraser, Robert Hinch, Luca Ferretti, Laura Thomson, Anel Nurtay, Lorenzo Pellis, Thomas House, George MacIntyre-Cockett, Amy Trebes, David Buck, Paolo Piazza, Angie Green, Lorne J Lonie, Darren Smith, Matthew Bashton, Matthew Crown, Andrew Nelson, Clare M McCann, Mohammed Adnan Tariq, Claire J Elstob, Rui Nunes Dos Santos, Zack Richards, Xin Xhang, Joseph Hawley, Mark R Lee, Priscilla Carrillo-Barragan, Isobel Chapman, Sarah Harthern-Flint, COVID-19 Genomics UK (COG-UK) consortium, David Bonsall, Katrina A Lythgoe

Source: PLoS Pathogens, Vol 19, Iss 10, p e1011706 (2023)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1011706&type=printable; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/34a741634d014981b3874599a314d832

Plant Genetic Resources for Food and Agriculture: The Role and Contribution of CREA (Italy) within the National Program RGV-FAO

Authors: Patrizia Vaccino, Maurizio Antonetti, Carlotta Balconi, Andrea Brandolini, Silvia Cappellozza, Angelo Raffaele Caputo, Andrea Carboni, Marco Caruso, Andrea Copetta, Giovanbattista de Dato, Pasquale De Vita, Giancarlo Fascella, Luca Ferretti, Nadia Ficcadenti, Pietro Fusani, Massimo Gardiman, Daniela Giovannini, Jessica Giovinazzi, Angela Iori, Rita Leogrande, Vincenzo Montalbano, Maria Antonietta Palombi, Luciano Pecetti, Enzo Perri, Milena Petriccione, Tea Sala, Paolo Storchi, Alessandro Tondelli, Pasquale Tripodi, Nino Virzì, Ignazio Verde

Source: Agronomy, Vol 14, Iss 6, p 1263 (2024)

Subject Terms: agrobiodiversity, plant germplasm, characterization, conservation, genotyping, phenotyping, Agriculture

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4395/14/6/1263; https://doaj.org/toc/2073-4395

Access URL: https://doaj.org/article/dff24685b157494c90a6d5946b675b8c

First Molecular Characterisation of Porcine Parvovirus 7 (PPV7) in Italy

Authors: Silvia Dei Giudici, Lorena Mura, Piero Bonelli, Luca Ferretti, Salwa Hawko, Giulia Franzoni, Pier Paolo Angioi, Anna Ladu, Graziella Puggioni, Elisabetta Antuofermo, Maria Luisa Sanna, Giovanni Pietro Burrai, Annalisa Oggiano

Source: Viruses, Vol 16, Iss 6, p 932 (2024)

Subject Terms: parvovirus, pigs, PPV7, Italy, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/16/6/932; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/1d8357fa93e84729a9264d582ef59fa5

Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Authors: Helen R Fryer, Tanya Golubchik, Matthew Hall, Christophe Fraser, Robert Hinch, Luca Ferretti, Laura Thomson, Anel Nurtay, Lorenzo Pellis, Thomas House, George MacIntyre-Cockett, Amy Trebes, David Buck, Paolo Piazza, Angie Green, Lorne J Lonie, Darren Smith, Matthew Bashton, Matthew Crown, Andrew Nelson, Clare M McCann, Mohammed Adnan Tariq, Claire J Elstob, Rui Nunes Dos Santos, Zack Richards, Xin Xhang, Joseph Hawley, Mark R Lee, Priscilla Carrillo-Barragan, Isobel Chapman, Sarah Harthern-Flint, COVID-19 Genomics UK (COG-UK) consortium, David Bonsall, Katrina A Lythgoe

Source: PLoS Pathogens, Vol 19, Iss 8, p e1011461 (2023)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1011461&type=printable; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/88e48725cc0d4fceb3aa9902b74fd193

A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data

Authors: Mahan Ghafari, Oliver J. Watson, Ariel Karlinsky, Luca Ferretti, Aris Katzourakis

Source: Nature Communications, Vol 13, Iss 1, Pp 1-9 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/02c54ef3cc9542b19f3f07d86d69d92f

Establishment and a comparative transcriptomic analysis of a male-specific cell line from the African malaria mosquito Anopheles gambiae

Authors: Elzbieta Krzywinska, Luca Ferretti, Jaroslaw Krzywinski

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-8 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/5245fe2944944010b9ed251facba1df6

Interpreting the pervasive observation of U-shaped Site Frequency Spectra.

Authors: Fabian Freund, Elise Kerdoncuff, Sebastian Matuszewski, Marguerite Lapierre, Marcel Hildebrandt, Jeffrey D Jensen, Luca Ferretti, Amaury Lambert, Timothy B Sackton, Guillaume Achaz

Source: PLoS Genetics, Vol 19, Iss 3, p e1010677 (2023)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/ccb0b82497cf45238c957dfd688c8606

A chromosome-level reference genome and pangenome for barn swallow population genomics

Authors: Simona Secomandi, Guido R. Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Abueg, Jennifer Balacco, Manuela Caprioli, William Chow, Claudio Ciofi, Joanna Collins, Olivier Fedrigo, Luca Ferretti, Arkarachai Fungtammasan, Bettina Haase, Kerstin Howe, Woori Kwak, Gianluca Lombardo, Patrick Masterson, Graziella Messina, Anders P. Møller, Jacquelyn Mountcastle, Timothy A. Mousseau, Joan Ferrer Obiol, Anna Olivieri, Arang Rhie, Diego Rubolini, Marielle Saclier, Roscoe Stanyon, David Stucki, Françoise Thibaud-Nissen, James Torrance, Antonio Torroni, Kristina Weber, Roberto Ambrosini, Andrea Bonisoli-Alquati, Erich D. Jarvis, Luca Gianfranceschi, Giulio Formenti

Source: Cell Reports, Vol 42, Iss 1, Pp 111992- (2023)

Subject Terms: CP: Molecular biology, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124723000037; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/e8b540fa7cef4bd6910b5bfb40b81e7f

Carlavirus Species Infecting Hop Plants in Italy: Molecular Identification and Phylogenetic Analyses of the Detected Isolates

Authors: Marta Luigi, Livia Donati, Renato Sciarroni, Andrea Gentili, Anna Taglienti, Antonio Tiberini, Francesco Faggioli, Luca Ferretti

Source: Plants, Vol 12, Iss 19, p 3514 (2023)

Subject Terms: hop carlaviruses, detection, RT-PCR, sequencing, Italy, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/12/19/3514; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/94ca634937a04719a5b5426a061d4bcc

On the origin and diversification of Podolian cattle breeds: testing scenarios of European colonization using genome-wide SNP data

Authors: Gabriele Senczuk, Salvatore Mastrangelo, Paolo Ajmone-Marsan, Zsolt Becskei, Paolo Colangelo, Licia Colli, Luca Ferretti, Taki Karsli, Hovirag Lancioni, Emiliano Lasagna, Donata Marletta, Christian Persichilli, Baldassare Portolano, Francesca M. Sarti, Elena Ciani, Fabio Pilla

Source: Genetics Selection Evolution, Vol 53, Iss 1, Pp 1-16 (2021)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/6206a4de85ac49c9be2a25d1018f8f72

The worldwide spread of Aedes albopictus: New insights from mitogenomes

Authors: Vincenza Battaglia, Vincenzo Agostini, Elisabetta Moroni, Giulia Colombo, Gianluca Lombardo, Nicola Rambaldi Migliore, Paolo Gabrieli, Maria Garofalo, Stella Gagliardi, Ludvik M. Gomulski, Luca Ferretti, Ornella Semino, Anna R. Malacrida, Giuliano Gasperi, Alessandro Achilli, Antonio Torroni, Anna Olivieri

Source: Frontiers in Genetics, Vol 13 (2022)

Subject Terms: Aedes albopictus spread, MtDNA variation, haplogroups, sources of adventive populations, mitogenome, phylogeny, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.931163/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/62beba604d7e486ab52dbdb063625e6c

In vivo Antiphytoviral Activity of Essential Oils and Hydrosols From Origanum vulgare, Thymus vulgaris, and Rosmarinus officinalis to Control Zucchini Yellow Mosaic Virus and Tomato Leaf Curl New Delhi Virus in Cucurbita pepo L.

Authors: Anna Taglienti, Livia Donati, Luca Ferretti, Laura Tomassoli, Filippo Sapienza, Manuela Sabatino, Gaia Di Massimo, Simona Fiorentino, Valerio Vecchiarelli, Paolo Nota, Rino Ragno

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: essential oil, hydrosol, plant virus, antiphytoviral, defense response, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.840893/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/8f1131db5d814b64b4194878e5584e75

Development, Validation, and Application of Reverse Transcription Real-Time and Droplet Digital PCR Assays for the Detection of the Potyviruses Watermelon Mosaic Virus and Zucchini Yellow Mosaic Virus in Cucurbits

Authors: Marta Luigi, Ariana Manglli, Carla Libia Corrado, Antonio Tiberini, Elisa Costantini, Luca Ferretti, Laura Tomassoli, Sabrina Bertin

Source: Plants, Vol 12, Iss 12, p 2364 (2023)

Subject Terms: virus detection, virus quantification, analytical sensitivity, analytical specificity, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/12/12/2364; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/ffef8ec083a047a285e21c4f63c79655

In Vivo Antiphytoviral and Aphid Repellency Activity of Essential Oils and Hydrosols from Mentha suaveolens and Foeniculum vulgare to Control Zucchini Yellow Mosaic Virus and Its Vector Aphis gossypii

Authors: Anna Taglienti, Livia Donati, Immacolata Dragone, Luca Ferretti, Andrea Gentili, Fabrizio Araniti, Filippo Sapienza, Roberta Astolfi, Simona Fiorentino, Valerio Vecchiarelli, Claudia Papalini, Rino Ragno, Sabrina Bertin

Source: Plants, Vol 12, Iss 5, p 1078 (2023)

Subject Terms: essential oil, hydrosol, plant virus, aphid vector, antiphytoviral, repellency, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/12/5/1078; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/a13b7baf5d694cbcb888fcee308207ae