Reaction-conditioned De Novo Enzyme Design with GENzyme

Authors: Hua, Chenqing, Lu, Jiarui, Liu, Yong, Zhang, Odin, Tang, Jian, Ying, Rex, Jin, Wengong, Wolf, Guy, Precup, Doina, Zheng, Shuangjia

Subject Terms: Quantitative Biology - Biomolecules, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2411.16694

Structure Language Models for Protein Conformation Generation

Authors: Lu, Jiarui, Chen, Xiaoyin, Lu, Stephen Zhewen, Shi, Chence, Guo, Hongyu, Bengio, Yoshua, Tang, Jian

Subject Terms: Quantitative Biology - Biomolecules, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2410.18403

ToolSandbox: A Stateful, Conversational, Interactive Evaluation Benchmark for LLM Tool Use Capabilities

Authors: Lu, Jiarui, Holleis, Thomas, Zhang, Yizhe, Aumayer, Bernhard, Nan, Feng, Bai, Felix, Ma, Shuang, Ma, Shen, Li, Mengyu, Yin, Guoli, Wang, Zirui, Pang, Ruoming

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2408.04682

Apple Intelligence Foundation Language Models

Authors: Gunter, Tom, Wang, Zirui, Wang, Chong, Pang, Ruoming, Narayanan, Andy, Zhang, Aonan, Zhang, Bowen, Chen, Chen, Chiu, Chung-Cheng, Qiu, David, Gopinath, Deepak, Yap, Dian Ang, Yin, Dong, Nan, Feng, Weers, Floris, Yin, Guoli, Huang, Haoshuo, Wang, Jianyu, Lu, Jiarui, Peebles, John, Ye, Ke, Lee, Mark, Du, Nan, Chen, Qibin, Keunebroek, Quentin, Wiseman, Sam, Evans, Syd, Lei, Tao, Rathod, Vivek, Kong, Xiang, Du, Xianzhi, Li, Yanghao, Wang, Yongqiang, Gao, Yuan, Ahmed, Zaid, Xu, Zhaoyang, Lu, Zhiyun, Rashid, Al, Jose, Albin Madappally, Doane, Alec, Bencomo, Alfredo, Vanderby, Allison, Hansen, Andrew, Jain, Ankur, Anupama, Anupama Mann, Kamal, Areeba, Wu, Bugu, Brum, Carolina, Maalouf, Charlie, Erdenebileg, Chinguun, Dulhanty, Chris, Moritz, Dominik, Kang, Doug, Jimenez, Eduardo, Ladd, Evan, Shi, Fangping, Bai, Felix, Chu, Frank, Hohman, Fred, Kotek, Hadas, Coleman, Hannah Gillis, Li, Jane, Bigham, Jeffrey, Cao, Jeffery, Lai, Jeff, Cheung, Jessica, Shan, Jiulong, Zhou, Joe, Li, John, Qin, Jun, Singh, Karanjeet, Vega, Karla, Zou, Kelvin, Heckman, Laura, Gardiner, Lauren, Bowler, Margit, Cordell, Maria, Cao, Meng, Hay, Nicole, Shahdadpuri, Nilesh, Godwin, Otto, Dighe, Pranay, Rachapudi, Pushyami, Tantawi, Ramsey, Frigg, Roman, Davarnia, Sam, Shah, Sanskruti, Guha, Saptarshi, Sirovica, Sasha, Ma, Shen, Ma, Shuang, Wang, Simon, Kim, Sulgi, Jayaram, Suma, Shankar, Vaishaal, Paidi, Varsha, Kumar, Vivek, Wang, Xin, Zheng, Xin, Cheng, Walker, Shrager, Yael, Ye, Yang, Tanaka, Yasu, Guo, Yihao, Meng, Yunsong, Luo, Zhao Tang, Ouyang, Zhi, Aygar, Alp, Wan, Alvin, Walkingshaw, Andrew, Lin, Antonie, Farooq, Arsalan, Ramerth, Brent, Reed, Colorado, Bartels, Chris, Chaney, Chris, Riazati, David, Yang, Eric Liang, Feldman, Erin, Hochstrasser, Gabriel, Seguin, Guillaume, Belousova, Irina, Pelemans, Joris, Yang, Karen, Vahid, Keivan Alizadeh, Cao, Liangliang, Najibi, Mahyar, Zuliani, Marco, Horton, Max, Cho, Minsik, Bhendawade, Nikhil, Dong, Patrick, Maj, Piotr, Agrawal, Pulkit, Shan, Qi, Fu, Qichen, Poston, Regan, Xu, Sam, Liu, Shuangning, Rao, Sushma, Heeramun, Tashweena, Merth, Thomas, Rayala, Uday, Cui, Victor, Sridhar, Vivek Rangarajan, Zhang, Wencong, Zhang, Wenqi, Wu, Wentao, Zhou, Xingyu, Liu, Xinwen, Zhao, Yang, Xia, Yin, Ren, Zhile, Ren, Zhongzheng

Subject Terms: Computer Science - Artificial Intelligence, Computer Science - Computation and Language, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2407.21075

MMAU: A Holistic Benchmark of Agent Capabilities Across Diverse Domains

Authors: Yin, Guoli, Bai, Haoping, Ma, Shuang, Nan, Feng, Sun, Yanchao, Xu, Zhaoyang, Ma, Shen, Lu, Jiarui, Kong, Xiang, Zhang, Aonan, Yap, Dian Ang, zhang, Yizhe, Ahnert, Karsten, Kamath, Vik, Berglund, Mathias, Walsh, Dominic, Gindele, Tobias, Wiest, Juergen, Lai, Zhengfeng, Wang, Xiaoming, Shan, Jiulong, Cao, Meng, Pang, Ruoming, Wang, Zirui

Subject Terms: Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2407.18961

WATCH: A Workflow to Assess Treatment Effect Heterogeneity in Drug Development for Clinical Trial Sponsors

Authors: Sechidis, Konstantinos, Sun, Sophie, Chen, Yao, Lu, Jiarui, Zhang, Cong, Baillie, Mark, Ohlssen, David, Vandemeulebroecke, Marc, Hemmings, Rob, Ruberg, Stephen, Bornkamp, Björn

Source: Pharmaceutical Statistics 2025

Subject Terms: Statistics - Applications

Access URL: http://arxiv.org/abs/2405.00859

Enhancing Signal Integrity at Bend Discontinuities in High-speed Differential Lines Based on Dispersion Characteristics of CRLH-TL

Authors: Lu, Jiarui, Kayano, Yoshiki

Source: 2023 Asia-Pacific Microwave Conference (APMC) Microwave Conference (APMC), 2023 Asia-Pacific. :80-82 Dec, 2023

Relation: 2023 Asia-Pacific Microwave Conference (APMC)

MMIDR: Teaching Large Language Model to Interpret Multimodal Misinformation via Knowledge Distillation

Authors: Wang, Longzheng, Xu, Xiaohan, Zhang, Lei, Lu, Jiarui, Xu, Yongxiu, Xu, Hongbo, Tang, Minghao, Zhang, Chuang

Subject Terms: Computer Science - Computation and Language

Access URL: http://arxiv.org/abs/2403.14171

Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations

Authors: Lu, Jiarui, Zhang, Zuobai, Zhong, Bozitao, Shi, Chence, Tang, Jian

Subject Terms: Quantitative Biology - Biomolecules, Computer Science - Machine Learning, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2402.10433

ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation

Authors: Zhang, Zuobai, Lu, Jiarui, Chenthamarakshan, Vijil, Lozano, Aurélie, Das, Payel, Tang, Jian

Subject Terms: Quantitative Biology - Biomolecules, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2402.07955

Structure-Informed Protein Language Model

Authors: Zhang, Zuobai, Lu, Jiarui, Chenthamarakshan, Vijil, Lozano, Aurélie, Das, Payel, Tang, Jian

Subject Terms: Quantitative Biology - Biomolecules, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2402.05856

Can Large Language Models Understand Context?

Authors: Zhu, Yilun, Moniz, Joel Ruben Antony, Bhargava, Shruti, Lu, Jiarui, Piraviperumal, Dhivya, Li, Site, Zhang, Yuan, Yu, Hong, Tseng, Bo-Hsiang

Subject Terms: Computer Science - Computation and Language

Access URL: http://arxiv.org/abs/2402.00858

Unsupervised Discovery of Steerable Factors When Graph Deep Generative Models Are Entangled

Authors: Liu, Shengchao, Wang, Chengpeng, Lu, Jiarui, Nie, Weili, Wang, Hanchen, Li, Zhuoxinran, Zhou, Bolei, Tang, Jian

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2401.17123

MARRS: Multimodal Reference Resolution System

Authors: Ates, Halim Cagri, Bhargava, Shruti, Li, Site, Lu, Jiarui, Maddula, Siddhardha, Moniz, Joel Ruben Antony, Nalamalapu, Anil Kumar, Nguyen, Roman Hoang, Ozyildirim, Melis, Patel, Alkesh, Piraviperumal, Dhivya, Renkens, Vincent, Samal, Ankit, Tran, Thy, Tseng, Bo-Hsiang, Yu, Hong, Zhang, Yuan, Zou, Rong

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2311.01650

STEER: Semantic Turn Extension-Expansion Recognition for Voice Assistants

Authors: Zhang, Leon Liyang, Lu, Jiarui, Moniz, Joel Ruben Antony, Kulkarni, Aditya, Piraviperumal, Dhivya, Tran, Tien Dung, Tzou, Nicholas, Yu, Hong

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2310.16990

Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasets

Authors: Beaini, Dominique, Huang, Shenyang, Cunha, Joao Alex, Li, Zhiyi, Moisescu-Pareja, Gabriela, Dymov, Oleksandr, Maddrell-Mander, Samuel, McLean, Callum, Wenkel, Frederik, Müller, Luis, Mohamud, Jama Hussein, Parviz, Ali, Craig, Michael, Koziarski, Michał, Lu, Jiarui, Zhu, Zhaocheng, Gabellini, Cristian, Klaser, Kerstin, Dean, Josef, Wognum, Cas, Sypetkowski, Maciej, Rabusseau, Guillaume, Rabbany, Reihaneh, Tang, Jian, Morris, Christopher, Koutis, Ioannis, Ravanelli, Mirco, Wolf, Guy, Tossou, Prudencio, Mary, Hadrien, Bois, Therence, Fitzgibbon, Andrew, Banaszewski, Błażej, Martin, Chad, Masters, Dominic

Subject Terms: Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2310.04292

Probing the Multi-turn Planning Capabilities of LLMs via 20 Question Games

Authors: Zhang, Yizhe, Lu, Jiarui, Jaitly, Navdeep

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Human-Computer Interaction, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2310.01468

Intelligent Assistant Language Understanding On Device

Authors: Aas, Cecilia, Abdelsalam, Hisham, Belousova, Irina, Bhargava, Shruti, Cheng, Jianpeng, Daland, Robert, Driesen, Joris, Flego, Federico, Guigue, Tristan, Johannsen, Anders, Lal, Partha, Lu, Jiarui, Moniz, Joel Ruben Antony, Perkins, Nathan, Piraviperumal, Dhivya, Pulman, Stephen, Séaghdha, Diarmuid Ó, Sun, David Q., Torr, John, Del Vecchio, Marco, Wacker, Jay, Williams, Jason D., Yu, Hong

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2308.03905

Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling

Authors: Lu, Jiarui, Zhong, Bozitao, Zhang, Zuobai, Tang, Jian

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Machine Learning, Quantitative Biology - Biomolecules

Access URL: http://arxiv.org/abs/2306.03117

5IDER: Unified Query Rewriting for Steering, Intent Carryover, Disfluencies, Entity Carryover and Repair

Authors: Lu, Jiarui, Tseng, Bo-Hsiang, Moniz, Joel Ruben Antony, Li, Site, Zhu, Xueyun, Yu, Hong, Akbacak, Murat

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2306.01855