LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA

Authors: Xiao-Long Cui, Ji Nie, Houxiang Zhu, Krissana Kowitwanich, Alana V. Beadell, Diana C. West-Szymanski, Zhou Zhang, Urszula Dougherty, Akushika Kwesi, Zifeng Deng, Yan Li, Danqing Meng, Kevin Roggin, Teresa Barry, Ryan Owyang, Ben Fefferman, Chang Zeng, Lu Gao, Carolyn W. T. Zhao, Yuri Malina, Jiangbo Wei, Melanie Weigert, Wenjun Kang, Ajay Goel, Brian C.-H. Chiu, Marc Bissonnette, Wei Zhang, Mengjie Chen, Chuan He

Source: Genome Biology, Vol 25, Iss 1, Pp 1-18 (2024)

Subject Terms: Linear amplification, Bisulfite sequencing, Low-input DNA, Cell-free DNA, Cancer detection, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/5bb50822efdf457baaf29b14934cc113

Comparison of EM-seq and PBAT methylome library methods for low-input DNA

Authors: Yanan Han, Galina Yurevna Zheleznyakova, Yanara Marincevic-Zuniga, Majid Pahlevan Kakhki, Amanda Raine, Maria Needhamsen, Maja Jagodic

Source: Epigenetics, Vol 17, Iss 10, Pp 1195-1204 (2022)

Subject Terms: low input dna, methylome, em-seq, pbat, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1559-2294; https://doaj.org/toc/1559-2308

Access URL: https://doaj.org/article/452abb58e35a4e1a873635961ec6d97d

Cell-free DNA methylome profiling by MBD-seq with ultra-low input

Authors: Jinyong Huang, Alex C. Soupir, Liang Wang

Source: Epigenetics, Vol 17, Iss 3, Pp 239-252 (2022)

Subject Terms: liquid biopsies, cfdna, mbd-seq, methylome, low input dna, next-generation sequencing, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1559-2294; https://doaj.org/toc/1559-2308

Access URL: https://doaj.org/article/3752cb521d4a41b0949a160a1d78c9c2

Population Genomics of Pooled Samples: Unveiling Symbiont Infrapopulation Diversity and Host–Symbiont Coevolution

Authors: Alix E. Matthews, Than J. Boves, Katie L. Percy, Wendy M. Schelsky, Asela J. Wijeratne

Source: Life, Vol 13, Iss 10, p 2054 (2023)

Subject Terms: Astigmata, diversity, ectosymbionts, feather mites, high-throughput sequencing, low-input DNA, Science

File Description: electronic resource

Relation: https://www.mdpi.com/2075-1729/13/10/2054; https://doaj.org/toc/2075-1729

Access URL: https://doaj.org/article/b2672804bfad4965a7097f453b2f9344

Advances in Single Molecule, Real-Time (SMRT) Sequencing

Authors: Ameur, Adam, Hestand, Matthew S.

Subject Terms: QH301-705.5, QR1-502, Q1-390, Cladobotryum protrusum, allele-specific analysis, low-input DNA, full length RNAseq, de novo genome assembly, de novo assembly, human reference genome, Tricoplusia ni, PacBio single molecule real-time sequencing, secondary metabolite, protein isoforms, bone marrow cell subpopulations, DNA methylation, mycoparasite, human whole-genome sequencing, GRCh38, SMRT sequencing, cytochrome P450 enzyme (CYP), mRNA isoforms, next generation sequencing, cobweb disease, Swedish population, mosquito, long-read SMRT sequencing, whole genome sequencing, terpenoid, insect genome, optical mapping, Gloeostereum incarnatum, population sequencing, statistical methods, gene expression, single molecule real-time sequencing, PacBio, Biology, life sciences

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/40355
https://mdpi.com/books/pdfview/book/1798

Detection of mixed-strain infections by FACS and ultra-low input genome sequencing

Authors: Mária Džunková, Andrés Moya, Xinhua Chen, Ciaran Kelly, Giuseppe D’Auria

Source: Gut Microbes, Vol 11, Iss 3, Pp 305-309 (2020)

Subject Terms: facs-seq, c. difficile, mixed-strain infection, low-input dna sequencing, epidemiology, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/d759c2d6c75f467bad59947b6efa3c04

A MBD-seq protocol for large-scale methylome-wide studies with (very) low amounts of DNA

Authors: Karolina A. Aberg, Robin F. Chan, Andrey A. Shabalin, Min Zhao, Gustavo Turecki, Nicklas Heine Staunstrup, Anna Starnawska, Ole Mors, Lin Y. Xie, Edwin JCG van den Oord

Source: Epigenetics, Vol 12, Iss 9, Pp 743-750 (2017)

Subject Terms: blood spots, lab-technical optimization, low-input dna, methyl-cpg binding domain sequencing, methylome-wide association study, methylome-wide coverage, whole-genome bisulfite sequencing, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1559-2294; https://doaj.org/toc/1559-2308

Access URL: https://doaj.org/article/97145fdd83d9488bb768c3b9fc166d09

The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research

Authors: Anna K. Childers, Scott M. Geib, Sheina B. Sim, Monica F. Poelchau, Brad S. Coates, Tyler J. Simmonds, Erin D. Scully, Timothy P. L. Smith, Christopher P. Childers, Renee L. Corpuz, Kevin Hackett, Brian Scheffler

Source: Insects, Vol 12, Iss 7, p 626 (2021)

Subject Terms: Arthropoda, pests, invasive pests, genome sequencing, long-read sequencing, low-input DNA, Science

File Description: electronic resource

Relation: https://www.mdpi.com/2075-4450/12/7/626; https://doaj.org/toc/2075-4450

Access URL: https://doaj.org/article/05011e2bae05449fafe7d043f6f46d35

Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue

Authors: Tanjina Kader, David L. Goode, Stephen Q. Wong, Jacquie Connaughton, Simone M. Rowley, Lisa Devereux, David Byrne, Stephen B. Fox, Gisela Mir Arnau, Richard W. Tothill, Ian G. Campbell, Kylie L. Gorringe

Source: Genome Medicine, Vol 8, Iss 1, Pp 1-13 (2016)

Subject Terms: Low coverage whole genome sequencing (LC WGS), Low-input DNA, Copy number, Formalin-fixed paraffin-embedded (FFPE), Next generation sequencing, Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13073-016-0375-z; https://doaj.org/toc/1756-994X

Access URL: https://doaj.org/article/a1e287102c684541ac509932e3a44016

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics

Authors: Christian Rinke, Serene Low, Ben J. Woodcroft, Jean-Baptiste Raina, Adam Skarshewski, Xuyen H. Le, Margaret K. Butler, Roman Stocker, Justin Seymour, Gene W. Tyson, Philip Hugenholtz

Source: PeerJ, Vol 4, p e2486 (2016)

Subject Terms: Nextera XT, 100 fg, Low input DNA library, Picogram, Reagent contamination, Low biomass, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/2486.pdf; https://peerj.com/articles/2486/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/454b85ebe8b84875a55ee53148eeb875

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