Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ

Authors: Long, Yongkang, Zhang, Bin, Tian, Shuye, Chan, Jia Jia, Zhou, Juexiao, Li, Zhongxiao, Li, Yisheng, An, Zheng, Liao, Xingyu, Wang, Yu

Source: Genome research. 33(4):644-657

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632437157&indx=1&recIds=ETOCRN632437157

Annotating TSSs in Multiple Cell Types Based on DNA Sequence and RNA-seq Data via DeeReCT-TSS

Authors: Zhou, Juexiao, Zhang, Bin, Li, Haoyang, Zhou, Longxi, Li, Zhongxiao, Long, Yongkang, Han, Wenkai, Wang, Mengran, Cui, Huanhuan, Li, Jingjing, Chen, Wei, Gao, Xin

Source: In Genomics, Proteomics & Bioinformatics October 2022 20(5):959-973

DeeReCT-APA: Prediction of Alternative Polyadenylation Site Usage Through Deep Learning

Authors: Li, Zhongxiao, Li, Yisheng, Zhang, Bin, Li, Yu, Long, Yongkang, Zhou, Juexiao, Zou, Xudong, Zhang, Min, Hu, Yuhui, Chen, Wei, Gao, Xin

Source: Genomics proteomics & bioinformatics. 20(3):483-495

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184059409.0x000001&indx=1&recIds=ETOCvdc_100184059409.0x000001

Recessive, Deleterious Variants in SMG8 Expand the Role of Nonsense-Mediated Decay in Developmental Disorders in Humans

Authors: Alzahrani, Fatema, Kuwahara, Hiroyuki, Long, Yongkang, Al-Owain, Mohammed, Tohary, Mohamed, AlSayed, Moeenaldeen, Mahnashi, Mohammed, Fathi, Lana, Alnemer, Maha, Al-Hamed, Mohamed H., Lemire, Gabrielle, Boycott, Kym M., Hashem, Mais, Han, Wenkai, Al-Maawali, Almundher, Al Mahrizi, Feisal, Al-Thihli, Khalid, Gao, Xin, Alkuraya, Fowzan S.

Source: American journal of human genetics. 107(6):1178-1185

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100115514286.0x000001&indx=1&recIds=ETOCvdc_100115514286.0x000001

A deep learning framework to predict binding preference of RNA constituents on protein surface

Authors: Lam, Jordy, Li, Yu, Zhu, Lizhe, Umarov, Ramzan, Jiang, Hanlun, Héliou, Amélie, Sheong, Fu, Liu, Tianyun, Long, Yongkang, Li, Yunfei, Fang, Liang, Altman, Russ, Chen, Wei, Huang, Xuhui, Gao, Xin

Source: Nature communications. 10(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190883139.0x000001&indx=1&recIds=ETOCvdc_100190883139.0x000001

Integrative multi-omics analysis of a colon cancer cell line with heterogeneous Wnt activity revealed RUNX2 as an epigenetic regulator of EMT

Authors: Yi, Hongyang, Li, Guipeng, Long, Yongkang, Liang, Weizheng, Cui, Huanhuan, Zhang, Bin, Tan, Ying, Li, Yunfei, Shen, Luochen, Deng, Daqi, Tang, Yisen, Mao, Chenyu, Tian, Shuye, Cai, Yunting, Zhu, Qionghua, Hu, Yuhui, Chen, Wei, Fang, Liang

Source: Oncogene; July 2020, Vol. 39 Issue: 28 p5152-5164, 13p

Annotating TSSs in Multiple Cell Types Based on DNA Sequence and RNA-seq Data via DeeReCT-TSS

Authors: Zhou, Juexiao, Zhang, Bin, Li, Haoyang, Zhou, Longxi, Li, Zhongxiao, Long, Yongkang, Han, Wenkai, Wang, Mengran, Cui, Huanhuan, Li, Jingjing, Chen, Wei, Gao, Xin

Source: Genomics Proteomics and Bioinformatics; 20230101, Issue: Preprints