The absence of telomerase leads to immune response and tumor regression in zebrafish melanoma

Authors: Lopes-Bastos, Bruno ^{1, 2}, Nabais, Joana ², Ferreira, Tânia ², Allavena, Giulia ¹, El Maï, Mounir ^{1, 2}, Bird, Malia ¹, Targen, Seniye ¹, Tattini, Lorenzo ¹, Kang, Da ³, Yue, Jia-Xing ³, Liti, Gianni ¹, Carvalho, Tânia G. ⁴, Godinho Ferreira, Miguel ^{1, 2, 5, ∗}

Source: In Cell Reports 24 December 2024 43(12)

Gain- and loss-of-function alleles within signaling pathways lead to phenotypic diversity among individuals

Authors: Vandermeulen, Matthew D. ¹, Khaiwal, Sakshi ², Rubio, Gabriel ¹, Liti, Gianni ², Cullen, Paul J. ^{1, 3, ∗}

Source: In iScience 18 October 2024 27(10)

How genomics can help biodiversity conservation

Authors: Aghayan, Sargis A., Alioto, Tyler S., Almudi, Isabel, Alvarez, Nadir, Alves, Paulo C., Amorim do Rosario, Isabel R., Antunes, Agostinho, Arribas, Paula, Baldrian, Petr, Bertorelle, Giorgio, Böhne, Astrid, Bonisoli-Alquati, Andrea, Boštjančić, Ljudevit L., Boussau, Bastien, Breton, Catherine M., Buzan, Elena, Campos, Paula F., Carreras, Carlos, Castro, L. FIlipe C., Chueca, Luis J., Čiampor, Fedor, Conti, Elena, Cook-Deegan, Robert, Croll, Daniel, Cunha, Mónica V., Delsuc, Frédéric, Dennis, Alice B., Dimitrov, Dimitar, Faria, Rui, Favre, Adrien, Fedrigo, Olivier D., Fernández, Rosa, Ficetola, Gentile Francesco, Flot, Jean-François, Gabaldón, Toni, Agius, Dolores R., Giani, Alice M., Gilbert, M. Thomas P., Grebenc, Tine, Guschanski, Katerina, Guyot, Romain, Hausdorf, Bernhard, Hawlitschek, Oliver, Heintzman, Peter D., Heinze, Berthold, Hiller, Michael, Husemann, Martin, Iannucci, Alessio, Irisarri, Iker, Jakobsen, Kjetill S., Klinga, Peter, Kloch, Agnieszka, Kratochwil, Claudius F., Kusche, Henrik, Layton, Kara K.S., Leonard, Jennifer A., Lerat, Emmanuelle, Liti, Gianni, Manousaki, Tereza, Marques-Bonet, Tomas, Matos-Maraví, Pável, Matschiner, Michael, Maumus, Florian, Mc Cartney, Ann M., Meiri, Shai, Melo-Ferreira, José, Mengual, Ximo, Monaghan, Michael T., Montagna, Matteo, Mysłajek, Robert W., Neiber, Marco T., Nicolas, Violaine, Novo, Marta, Ozretić, Petar, Palero, Ferran, Pârvulescu, Lucian, Pascual, Marta, Paulo, Octávio S., Pavlek, Martina, Pegueroles, Cinta, Pellissier, Loïc, Pesole, Graziano, Primmer, Craig R., Riesgo, Ana, Rüber, Lukas, Rubolini, Diego, Salvi, Daniele, Seehausen, Ole, Seidel, Matthias, Studer, Bruno, Theodoridis, Spyros, Thines, Marco, Urban, Lara, Vasemägi, Anti, Vella, Adriana, Vella, Noel, Vernes, Sonja C., Vernesi, Cristiano, Vieites, David R., Wheat, Christopher W., Wörheide, Gert, Wurm, Yannick, Zammit, Gabrielle, Theissinger, Kathrin, Fernandes, Carlos, Formenti, Giulio, Bista, Iliana, Berg, Paul R., Bleidorn, Christoph, Bombarely, Aureliano, Crottini, Angelica, Gallo, Guido R., Godoy, José A., Jentoft, Sissel, Malukiewicz, Joanna, Mouton, Alice, Oomen, Rebekah A., Paez, Sadye, Palsbøll, Per J., Pampoulie, Christophe, Ruiz-López, María J., Secomandi, Simona, Svardal, Hannes, Theofanopoulou, Constantina, de Vries, Jan, Waldvogel, Ann-Marie, Zhang, Guojie, Jarvis, Erich D., Bálint, Miklós, Ciofi, Claudio, Waterhouse, Robert M., Mazzoni, Camila J., Höglund, Jacob

Source: In Trends in Genetics July 2023 39(7):545-559

Evolution of yeast hybrids by aborted meiosis

Authors: Mozzachiodi, Simone ^*, Liti, Gianni ^*

Source: In Current Opinion in Genetics & Development December 2022 77

An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia.

Authors: Peña, Tomas A.^1,2, Villarreal, Pablo^1,2, Agier, Nicolas³, De Chiara, Matteo⁴, Barría, Tomas¹, Urbina, Kamila^1,5, Villarroel, Carlos A.⁶, Santos, Ana R. O.⁷, Rosa, Carlos A.⁷, Nespolo, Roberto F.^2,5,8,9, Liti, Gianni⁴, Fischer, Gilles³, Cubillos, Francisco A.^1,2,5, francisco.cubillos.r@usach.cl

Source: PLoS Genetics; 9/6/2024, Vol. 20 Issue 9, p1-24, 24p

Yeasts from temperate forests

Authors: Mozzachiodi, Simone, Bai, Feng‐Yan, Baldrian, Petr, Bell, Graham, Boundy‐Mills, Kyria, Buzzini, Pietro, Čadež, Neža, Cubillos, Francisco A., Dashko, Sofia, Dimitrov, Roumen, Fisher, Kaitlin J., Gibson, Brian, Gouliamova, Dilnora, Greig, Duncan, Heistinger, Lina, Hittinger, Chris Todd, Jecmenica, Marina, Koufopanou, Vassiliki, Landry, Christian R., Mašínová, Tereza, Naumova, Elena S., Opulente, Dana, Peña, Jacqueline J., Petrovič, Uroš, Tsai, Isheng Jason, Turchetti, Benedetta, Villarreal, Pablo, Yurkov, Andrey, Liti, Gianni, Boynton, Primrose

Source: Yeast. 39(1-2):4-24

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100143452890.0x000001&indx=1&recIds=ETOCvdc_100143452890.0x000001

ScRAPdb: an integrated pan-omics database for the Saccharomyces cerevisiae reference assembly panel.

Authors: Miao, Zepu, Ren, Yifan, Tarabini, Andrea, Yang, Ludong, Li, Huihui, Ye, Chang, Liti, Gianni, Fischer, Gilles, Li, Jing, Yue, Jia-Xing

Source: Nucleic Acids Research; 1/6/2025, Vol. 53 Issue D1, pD852-D863, 12p

The era of reference genomes in conservation genomics

Authors: Formenti, Giulio, Theissinger, Kathrin, Fernandes, Carlos, Bista, Iliana, Bombarely, Aureliano, Bleidorn, Christoph, Čiampor, Fedor, Ciofi, Claudio, Crottini, Angelica, Godoy, José A., Hoglund, Jacob, Malukiewicz, Joanna, Mouton, Alice, Oomen, Rebekah A., Paez, Sadye, Palsbøll, Per, Pampoulie, Christophe, Ruiz-López, María José, Svardal, Hannes, Theofanopoulou, Constantina, de Vries, Jan, Waldvogel, Ann-Marie, Zhang, Goujie, Mazzoni, Camila J., Jarvis, Erich, Bálint, Miklós, Aghayan, Sargis A., Alioto, Tyler S., Almudi, Isabel, Alvarez, Nadir, Alves, Paulo C., Amorim, Isabel R., Antunes, Agostinho, Arribas, Paula, Baldrian, Petr, Berg, Paul R., Bertorelle, Giorgio, Böhne, Astrid, Bonisoli-Alquati, Andrea, Boštjančić, Ljudevit L., Boussau, Bastien, Breton, Catherine M., Buzan, Elena, Campos, Paula F., Carreras, Carlos, Castro, L. FIlipe, Chueca, Luis J., Conti, Elena, Cook-Deegan, Robert, Croll, Daniel, Cunha, Mónica V., Delsuc, Frédéric, Dennis, Alice B., Dimitrov, Dimitar, Faria, Rui, Favre, Adrien, Fedrigo, Olivier D., Fernández, Rosa, Ficetola, Gentile Francesco, Flot, Jean-François, Gabaldón, Toni, Galea Agius, Dolores R., Gallo, Guido R., Giani, Alice M., Gilbert, M. Thomas P., Grebenc, Tine, Guschanski, Katerina, Guyot, Romain, Hausdorf, Bernhard, Hawlitschek, Oliver, Heintzman, Peter D., Heinze, Berthold, Hiller, Michael, Husemann, Martin, Iannucci, Alessio, Irisarri, Iker, Jakobsen, Kjetill S., Jentoft, Sissel, Klinga, Peter, Kloch, Agnieszka, Kratochwil, Claudius F., Kusche, Henrik, Layton, Kara K.S., Leonard, Jennifer A., Lerat, Emmanuelle, Liti, Gianni, Manousaki, Tereza, Marques-Bonet, Tomas, Matos-Maraví, Pável, Matschiner, Michael, Maumus, Florian, Mc Cartney, Ann M., Meiri, Shai, Melo-Ferreira, José, Mengual, Ximo, Monaghan, Michael T., Montagna, Matteo, Mysłajek, Robert W., Neiber, Marco T., Nicolas, Violaine, Novo, Marta, Ozretić, Petar, Palero, Ferran, Pârvulescu, Lucian, Pascual, Marta, Paulo, Octávio S., Pavlek, Martina, Pegueroles, Cinta, Pellissier, Loïc, Pesole, Graziano, Primmer, Craig R., Riesgo, Ana, Rüber, Lukas, Rubolini, Diego, Salvi, Daniele, Seehausen, Ole, Seidel, Matthias, Secomandi, Simona, Studer, Bruno, Theodoridis, Spyros, Thines, Marco, Urban, Lara, Vasemägi, Anti, Vella, Adriana, Vella, Noel, Vernes, Sonja C., Vernesi, Cristiano, Vieites, David R., Waterhouse, Robert M., Wheat, Christopher W., Wörheide, Gert, Wurm, Yannick, Zammit, Gabrielle, Höglund, Jacob, Palsbøll, Per J., Ruiz-López, María J., Zhang, Guojie, Jarvis, Erich D.

Source: In Trends in Ecology & Evolution March 2022 37(3):197-202

Meiotic Cells Counteract Programmed Retrotransposon Activation via RNA-Binding Translational Repressor Assemblies

Authors: Laureau, Raphaelle, Dyatel, Annie, Dursuk, Gizem, Brown, Samantha, Adeoye, Hannah, Yue, Jia-Xing, De Chiara, Matteo, Harris, Anthony, Ünal, Elçin, Liti, Gianni, Adams, Ian R., Berchowitz, Luke E.

Source: In Developmental Cell 11 January 2021 56(1):22-35

The budding yeast life cycle: More complex than anticipated?

Authors: Fischer, Gilles, Liti, Gianni, Llorente, Bertrand

Source: Yeast. 38(1):5-11

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100114754368.0x000001&indx=1&recIds=ETOCvdc_100114754368.0x000001

Telomeres are shorter in wild Saccharomyces cerevisiae isolates than in domesticated ones.

Authors: D’Angiolo, Melania¹, Jia-Xing Yue^1,2, De Chiara, Matteo¹, Barré, Benjamin P.^1,3, Giraud Panis, Marie-Josèphe¹, Gilson, Eric^1,4, eric.gilson@unice.fr, Liti, Gianni¹, gianni.liti@unice.fr

Source: Genetics; Mar2023, Vol. 223 Issue 3, p1-14, 14p

Building pangenome graphs

Authors: Garrison, Erik, Guarracino, Andrea, Heumos, Simon, Villani, Flavia, Bao, Zhigui, Tattini, Lorenzo, Hagmann, Jörg, Vorbrugg, Sebastian, Marco-Sola, Santiago, Kubica, Christian, Ashbrook, David G., Thorell, Kaisa, Rusholme-Pilcher, Rachel L., Liti, Gianni, Rudbeck, Emilio, Golicz, Agnieszka A., Nahnsen, Sven, Yang, Zuyu, Mwaniki, Moses Njagi, Nobrega, Franklin L., Wu, Yi, Chen, Hao, de Ligt, Joep, Sudmant, Peter H., Huang, Sanwen, Weigel, Detlef, Soranzo, Nicole, Colonna, Vincenza, Williams, Robert W., Prins, Pjotr

Source: Nature Methods; November 2024, Vol. 21 Issue: 11 p2008-2012, 5p

Genome instability footprint under rapamycin and hydroxyurea treatments.

Authors: Li, Jing^1,2, Stenberg, Simon³, Yue, Jia-Xing^1,2, Mikhalev, Ekaterina⁴, Thompson, Dawn⁴, Warringer, Jonas³, Liti, Gianni², gianni.liti@cnrs.fr

Source: PLoS Genetics; 11/06/2023, Vol. 19 Issue 11, p1-23, 23p

Accurate Tracking of the Mutational Landscape of Diploid Hybrid Genomes

Authors: Tattini, Lorenzo, Tellini, Nicolò, Mozzachiodi, Simone, D'Angiolo, Melania, Loeillet, Sophie, Nicolas, Alain, Liti, Gianni

Source: Molecular biology and evolution. 36(12):2861-2877

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100096837097.0x000001&indx=1&recIds=ETOCvdc_100096837097.0x000001

André Goffeau's imprinting on second generation yeast 'genomologists'

Authors: Fairhead, Cécile, Fischer, Gilles, Liti, Gianni, Neuvéglise, Cécile, Schacherer, Joseph

Source: Yeast. 36(4):167-175

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100090587891.0x000001&indx=1&recIds=ETOCvdc_100090587891.0x000001

Editorial overview: evolutionary genetics: how a tiny model system enables big discoveries

Authors: Landry, Christian R, Liti, Gianni

Source: Current opinion in genetics & development. 77

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184125177.0x000001&indx=1&recIds=ETOCvdc_100184125177.0x000001

Clonal Heterogeneity Influences the Fate of New Adaptive Mutations

Authors: Vázquez-García, Ignacio, Salinas, Francisco, Li, Jing, Fischer, Andrej, Barré, Benjamin, Hallin, Johan, Bergström, Anders, Alonso-Perez, Elisa, Warringer, Jonas, Mustonen, Ville, Liti, Gianni

Source: In Cell Reports 17 October 2017 21(3):732-744

Sequence Diversity, Reproductive Isolation and Species Concepts in Saccharomyces.

Authors: Liti, Gianni, Barton, David B. H., Louis, Edward J.

Source: Genetics; October 2006, Vol. 174 Issue 2, p839-850, 12p

Natural proteome diversity links aneuploidy tolerance to protein turnover.

Authors: Muenzner, Julia, Trébulle, Pauline, Agostini, Federica, Zauber, Henrik, Messner, Christoph B., Steger, Martin, Kilian, Christiane, Lau, Kate, Barthel, Natalie, Lehmann, Andrea, Textoris-Taube, Kathrin, Caudal, Elodie, Egger, Anna-Sophia, Amari, Fatma, De Chiara, Matteo, Demichev, Vadim, Gossmann, Toni I., Mülleder, Michael, Liti, Gianni, Schacherer, Joseph

Source: Nature; Jun2024, Vol. 630 Issue 8015, p149-157, 9p

Ancient and recent origins of shared polymorphisms in yeast.

Authors: Tellini, Nicolò, De Chiara, Matteo, Mozzachiodi, Simone, Tattini, Lorenzo, Vischioni, Chiara, Naumova, Elena S., Warringer, Jonas, Bergström, Anders, Liti, Gianni

Source: Nature Ecology & Evolution; Apr2024, Vol. 8 Issue 4, p761-776, 16p