Multiple strategies association revealed functional candidate FASN gene for fatty acid composition in cattle

Authors: Bo Zhu, Tianzhen Wang, Qunhao Niu, Zezhao Wang, El Hamidi Hay, Lei Xu, Yan Chen, Lupei Zhang, Xue Gao, Huijiang Gao, Yang Cao, Yumin Zhao, Lingyang Xu, Junya Li

Source: Communications Biology, Vol 8, Iss 1, Pp 1-12 (2025)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/96b6ca19283c4db880c2a87e3a219740

Integrating multi-layered biological priors to improve genomic prediction accuracy in beef cattle

Authors: Zhida Zhao, Qunhao Niu, Jiayuan Wu, Tianyi Wu, Xueyuan Xie, Zezhao Wang, Lupei Zhang, Huijiang Gao, Xue Gao, Lingyang Xu, Bo Zhu, Junya Li

Source: Biology Direct, Vol 19, Iss 1, Pp 1-16 (2024)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1745-6150

Access URL: https://doaj.org/article/d7a984ac7b494153bdae66fef7bd10e5

Evaluation of genomic mating approach based on genetic algorithms for long-term selection in Huaxi cattle

Authors: Yuanqing Wang, Bo Zhu, Jing Wang, Lupei Zhang, Lingyang Xu, Yan Chen, Zezhao Wang, Huijiang Gao, Junya Li, Xue Gao

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-12 (2024)

Subject Terms: Simulation, Genomic mating, Genetic algorithms, Genetic gain, Huaxi cattle, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/df6e5c5b7fbb4d3f96cf81788f569a49

Case Report: Primary catastrophic antiphospholipid syndrome in a pediatric patient with cerebral venous sinus thrombosis as the first manifestation

Authors: Lingyang Xu, Jing Wu, Haidong Wang, Baowang Yang

Source: Frontiers in Pediatrics, Vol 12 (2024)

Subject Terms: case report, primary catastrophic antiphospholipid antibody syndrome, multiple thrombus, children, cerebral venous sinus thrombosis, Pediatrics, RJ1-570

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fped.2024.1491095/full; https://doaj.org/toc/2296-2360

Access URL: https://doaj.org/article/33429c7ec35b400f828d7dd9f0d6de07

Prescreening of large-effect markers with multiple strategies improves the accuracy of genomic prediction

Authors: Keanning Li, Bingxing An, Mang Liang, Tianpeng Chang, Tianyu Deng, Lili Du, Sheng Cao, Yueying Du, Hongyan Li, Lingyang Xu, Lupei Zhang, Xue Gao, Junya LI, Huijiang Gao

Source: Journal of Integrative Agriculture, Vol 23, Iss 5, Pp 1634-1643 (2024)

Subject Terms: multi-omics data, features prescreening, eQTL mapping, Huaxi cattle, genomic selection, Agriculture (General), S1-972

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2095311923004458; https://doaj.org/toc/2095-3119

Access URL: https://doaj.org/article/174d1302262e4897b4aa7669990028b7

Comparative Analysis of Genomic Prediction for Production Traits Using Genomic Annotation and a Genome-Wide Association Study at Sequencing Levels in Beef Cattle

Authors: Zhida Zhao, Qunhao Niu, Tianyi Wu, Feng Liu, Zezhao Wang, Huijiang Gao, Junya Li, Bo Zhu, Lingyang Xu

Source: Agriculture, Vol 14, Iss 12, p 2255 (2024)

Subject Terms: whole-genome sequencing, biological priors, genomic prediction, beef cattle, Agriculture (General), S1-972

File Description: electronic resource

Relation: https://www.mdpi.com/2077-0472/14/12/2255; https://doaj.org/toc/2077-0472

Access URL: https://doaj.org/article/5645f2f4a2af4ed5b76ef0e7303141e4

Genome-Wide Scans for Selection Signatures in Ningxia Angus Cattle Reveal Genetic Variants Associated with Economic and Adaptive Traits

Authors: Haiqi Yin, Yuan Feng, Yu Wang, Qiufei Jiang, Juan Zhang, Jie Zhao, Yafei Chen, Yaxuan Wang, Ruiqi Peng, Yahui Wang, Tong Zhao, Caihong Zheng, Lingyang Xu, Xue Gao, Huijiang Gao, Junya Li, Zezhao Wang, Lupei Zhang

Source: Animals, Vol 15, Iss 1, p 58 (2024)

Subject Terms: Angus cattle, whole-genome resequencing, selection signatures, iHS, immune-related gene, economic trait, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/15/1/58; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/ef2f79005f664d3b95fe4a0f3b3ef09e

Multi‐trait genomic predictions using GBLUP and Bayesian mixture prior model in beef cattle

Authors: Zezhao Wang, Haoran Ma, Hongwei Li, Lei Xu, Hongyan Li, Bo Zhu, El Hamidi Hay, Lingyang Xu, Junya Li

Source: Animal Research and One Health, Vol 1, Iss 1, Pp 17-29 (2023)

Subject Terms: Bayesian method, beef cattle, GBLUP, multi‐trait genomic predictions, Animal culture, SF1-1100, Animal biochemistry, QP501-801

File Description: electronic resource

Relation: https://doaj.org/toc/2835-5075

Access URL: https://doaj.org/article/898ddb4d941645c69017b9212a5c2bc7

The eQTL colocalization and transcriptome-wide association study identify potentially causal genes responsible for economic traits in Simmental beef cattle

Authors: Wentao Cai, Yapeng Zhang, Tianpeng Chang, Zezhao Wang, Bo Zhu, Yan Chen, Xue Gao, Lingyang Xu, Lupei Zhang, Huijiang Gao, Jiuzhou Song, Junya Li

Source: Journal of Animal Science and Biotechnology, Vol 14, Iss 1, Pp 1-17 (2023)

Subject Terms: Cattle, Colocalization, eQTL mapping, GWAS, TWAS, Animal culture, SF1-1100, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: https://doaj.org/toc/2049-1891

Access URL: https://doaj.org/article/60e768276d924a22a9cfa7154e2a9003

Genome-Wide Gene–Environment Interaction Analysis Identifies Novel Candidate Variants for Growth Traits in Beef Cattle

Authors: Tianyu Deng, Keanning Li, Lili Du, Mang Liang, Li Qian, Qingqing Xue, Shiyuan Qiu, Lingyang Xu, Lupei Zhang, Xue Gao, Xianyong Lan, Junya Li, Huijiang Gao

Source: Animals, Vol 14, Iss 11, p 1695 (2024)

Subject Terms: genotype-by-environment interaction, robust estimator, cattle, gene-based analysis, gene-set analysis, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/14/11/1695; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/e1253c5ef77f45fdb9df57ff62c542a7

Genomic prediction of carcass traits using different haplotype block partitioning methods in beef cattle

Authors: Hongwei Li, Zezhao Wang, Lei Xu, Qian Li, Han Gao, Haoran Ma, Wentao Cai, Yan Chen, Xue Gao, Lupei Zhang, Huijiang Gao, Bo Zhu, Lingyang Xu, Junya Li

Source: Evolutionary Applications, Vol 15, Iss 12, Pp 2028-2042 (2022)

Subject Terms: Bayesian models, beef cattle, GBLUP, haplotype, linkage disequilibrium, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/c714b3dfec1c4313b865473e29e146a9

Incorporating kernelized multi-omics data improves the accuracy of genomic prediction

Authors: Mang Liang, Bingxing An, Tianpeng Chang, Tianyu Deng, Lili Du, Keanning Li, Sheng Cao, Yueying Du, Lingyang Xu, Lupei Zhang, Xue Gao, Junya Li, Huijiang Gao

Source: Journal of Animal Science and Biotechnology, Vol 13, Iss 1, Pp 1-10 (2022)

Subject Terms: BLUP, Cosine kernel, Genomic prediction, Transcriptome, Animal culture, SF1-1100, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: https://doaj.org/toc/2049-1891

Access URL: https://doaj.org/article/166382f0fcab4ba79de31f7559573a7f

Comparative transcriptomic analysis reveals region-specific expression patterns in different beef cuts

Authors: Tianliu Zhang, Tianzhen Wang, Qunhao Niu, Xu Zheng, Haipeng Li, Xue Gao, Yan Chen, Huijiang Gao, Lupei Zhang, George E. Liu, Junya Li, Lingyang Xu

Source: BMC Genomics, Vol 23, Iss 1, Pp 1-11 (2022)

Subject Terms: Meat quality, Region-specific expressed gene, Co-expression, Region-specific module, Beef cut, Cattle, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/8f7c508155244269b2ae441aa3af7cf9

A draft genome of Drung cattle reveals clues to its chromosomal fusion and environmental adaptation

Authors: Yan Chen, Tianliu Zhang, Ming Xian, Rui Zhang, Weifei Yang, Baqi Su, Guoqiang Yang, Limin Sun, Wenkun Xu, Shangzhong Xu, Huijiang Gao, Lingyang Xu, Xue Gao, Junya Li

Source: Communications Biology, Vol 5, Iss 1, Pp 1-15 (2022)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/31d0e3daf82448e283519d9c87f70271

Genome-wide recombination map construction from single sperm sequencing in cattle

Authors: Liu Yang, Yahui Gao, Mingxun Li, Ki-Eun Park, Shuli Liu, Xiaolong Kang, Mei Liu, Adam Oswalt, Lingzhao Fang, Bhanu P. Telugu, Charles G. Sattler, Cong-jun Li, John B. Cole, Eyal Seroussi, Lingyang Xu, Lv Yang, Yang Zhou, Li Li, Hongping Zhang, Benjamin D. Rosen, Curtis P. Van Tassell, Li Ma, George E. Liu

Source: BMC Genomics, Vol 23, Iss 1, Pp 1-9 (2022)

Subject Terms: Cattle, Single sperm, Sequencing, Recombination, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/9ab818a422c04c138317307af6af7c34

Transcriptional atlas analysis from multiple tissues reveals the expression specificity patterns in beef cattle

Authors: Tianliu Zhang, Tianzhen Wang, Qunhao Niu, Lei Xu, Yan Chen, Xue Gao, Huijiang Gao, Lupei Zhang, George E. Liu, Junya Li, Lingyang Xu

Source: BMC Biology, Vol 20, Iss 1, Pp 1-19 (2022)

Subject Terms: Gene expression, Housekeeping genes, Co-expression network, Tissue-specific genes, Differentially expressed genes, Beef cattle, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/5b4416ddd3d3473399bc50d98eab5c41

Towards the detection of copy number variation from single sperm sequencing in cattle

Authors: Liu Yang, Yahui Gao, Adam Oswalt, Lingzhao Fang, Clarissa Boschiero, Mahesh Neupane, Charles G. Sattler, Cong-jun Li, Eyal Seroussi, Lingyang Xu, Lv Yang, Li Li, Hongping Zhang, Benjamin D. Rosen, Curtis P. Van Tassell, Yang Zhou, Li Ma, George E. Liu

Source: BMC Genomics, Vol 23, Iss 1, Pp 1-9 (2022)

Subject Terms: Cattle, Single sperm sequencing, Copy number variation, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/82049cb901164fdc84f79f39900211d4

Incorporating genome-wide and transcriptome-wide association studies to identify genetic elements of longissimus dorsi muscle in Huaxi cattle

Authors: Mang Liang, Bingxing An, Tianyu Deng, Lili Du, Keanning Li, Sheng Cao, Yueying Du, Lingyang Xu, Lupei Zhang, Xue Gao, Yang Cao, Yuming Zhao, Junya Li, Huijiang Gao

Source: Frontiers in Genetics, Vol 13 (2023)

Subject Terms: longissimus dorsi muscle, GWAS, TWAS, FCT, Huaxi cattle, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.982433/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/66d58d4f45264bdf89739bf97f6acf54

Genome-Wide Association Analysis Identifies the PMEL Gene Affecting Coat Color and Birth Weight in Simmental × Holstein

Authors: Jing Wang, Tingting Fan, Zhenwei Du, Lingyang Xu, Yan Chen, Lupei Zhang, Huijiang Gao, Junya Li, Yi Ma, Xue Gao

Source: Animals, Vol 13, Iss 24, p 3821 (2023)

Subject Terms: coat color, birth weight, Simmental × Holstein, GWAS, PMEL, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/13/24/3821; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/53662a4dcec4448c8209c46d68c4f6e9

Genetic Association Analysis of Copy Number Variations for Meat Quality in Beef Cattle

Authors: Jiayuan Wu, Tianyi Wu, Xueyuan Xie, Qunhao Niu, Zhida Zhao, Bo Zhu, Yan Chen, Lupei Zhang, Xue Gao, Xiaoyan Niu, Huijiang Gao, Junya Li, Lingyang Xu

Source: Foods, Vol 12, Iss 21, p 3986 (2023)

Subject Terms: copy number variation, association analysis, meat quality, beef cattle, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://www.mdpi.com/2304-8158/12/21/3986; https://doaj.org/toc/2304-8158

Access URL: https://doaj.org/article/fa5b62b74a03418b89c1a6a5637d5c24