Isolated Channel Vision Transformers: From Single-Channel Pretraining to Multi-Channel Finetuning

Authors: Lian, Wenyi, Lindblad, Joakim, Micke, Patrick, Sladoje, Nataša

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2503.09826

UpStory: the Uppsala Storytelling dataset

Authors: Fraile, Marc, Calvo-Barajas, Natalia, Apeiron, Anastasia Sophia, Varni, Giovanna, Lindblad, Joakim, Sladoje, Nataša, Castellano, Ginevra

Subject Terms: Computer Science - Human-Computer Interaction, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2407.04352

Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection

Authors: Lian, Wenyi, Lindblad, Joakim, Stark, Christina Runow, Hirsch, Jan-Michaél, Sladoje, Nataša

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2407.01869

Contrastive Learning of Equivariant Image Representations for Multimodal Deformable Registration

Authors: Nordling, Love, Ofverstedt, Johan, Lindblad, Joakim, Sladoje, Natasa

Source: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2023 IEEE 20th International Symposium on. :1-5 Apr, 2023

Relation: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)

End-to-end Multiple Instance Learning with Gradient Accumulation

Authors: Andersson, Axel, Koriakina, Nadezhda, Sladoje, Natasa, Lindblad, Joakim

Source: 2022 IEEE International Conference on Big Data (Big Data) Big Data (Big Data), 2022 IEEE International Conference on. :2742-2746 Dec, 2022

Relation: 2022 IEEE International Conference on Big Data (Big Data)

Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community

Authors: Zhang, Chong, Gaignard, Alban, Kalas, Matus, Levet, Florian, Delestro, Felipe, Lindblad, Joakim, Sladoje, Natasa, Plantard, Laure, Latour, Alain, Haase, Robert, Martins, Gabriel, Sampaio, Paula, Scholz, Leandro, taggers, NEUBIAS, Tosi, Sébastien, Miura, Kota, Colombelli, Julien, Paul-Gilloteaux, Perrine

Subject Terms: Quantitative Biology - Quantitative Methods, 68U10, 65D18, I.4, H.1, J.3

Access URL: http://arxiv.org/abs/2312.11256

Roadmap on Deep Learning for Microscopy

Authors: Volpe, Giovanni, Wählby, Carolina, Tian, Lei, Hecht, Michael, Yakimovich, Artur, Monakhova, Kristina, Waller, Laura, Sbalzarini, Ivo F., Metzler, Christopher A., Xie, Mingyang, Zhang, Kevin, Lenton, Isaac C. D., Rubinsztein-Dunlop, Halina, Brunner, Daniel, Bai, Bijie, Ozcan, Aydogan, Midtvedt, Daniel, Wang, Hao, Sladoje, Nataša, Lindblad, Joakim, Smith, Jason T., Ochoa, Marien, Barroso, Margarida, Intes, Xavier, Qiu, Tong, Yu, Li-Yu, You, Sixian, Liu, Yongtao, Ziatdinov, Maxim A., Kalinin, Sergei V., Sheridan, Arlo, Manor, Uri, Nehme, Elias, Goldenberg, Ofri, Shechtman, Yoav, Moberg, Henrik K., Langhammer, Christoph, Špačková, Barbora, Helgadottir, Saga, Midtvedt, Benjamin, Argun, Aykut, Thalheim, Tobias, Cichos, Frank, Bo, Stefano, Hubatsch, Lars, Pineda, Jesus, Manzo, Carlo, Bachimanchi, Harshith, Selander, Erik, Homs-Corbera, Antoni, Fränzl, Martin, de Haan, Kevin, Rivenson, Yair, Korczak, Zofia, Adiels, Caroline Beck, Mijalkov, Mite, Veréb, Dániel, Chang, Yu-Wei, Pereira, Joana B., Matuszewski, Damian, Kylberg, Gustaf, Sintorn, Ida-Maria, Caicedo, Juan C., Cimini, Beth A, Bell, Muyinatu A. Lediju, Saraiva, Bruno M., Jacquemet, Guillaume, Henriques, Ricardo, Ouyang, Wei, Le, Trang, Gómez-de-Mariscal, Estibaliz, Sage, Daniel, Muñoz-Barrutia, Arrate, Lindqvist, Ebba Josefson, Bergman, Johanna

Subject Terms: Physics - Optics, Electrical Engineering and Systems Science - Image and Video Processing, Physics - Applied Physics, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2303.03793

Can representation learning for multimodal image registration be improved by supervision of intermediate layers?

Authors: Wetzer, Elisabeth, Lindblad, Joakim, Sladoje, Nataša

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2303.00403

The Effect of Within-Bag Sampling on End-to-End Multiple Instance Learning

Authors: Koriakina, Nadezhda, Sladoje, Nataaa, Lindblad, Joakim

Source: 2021 12th International Symposium on Image and Signal Processing and Analysis (ISPA) Image and Signal Processing and Analysis (ISPA), 2021 12th International Symposium on. :183-188 Sep, 2021

Relation: 2021 12th International Symposium on Image and Signal Processing and Analysis (ISPA)

Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection

Authors: Lian, Wenyi ^a, Lindblad, Joakim ^a, Runow Stark, Christina ^{b, c}, Hirsch, Jan-Michaél ^{b, d}, Sladoje, Nataša ^{a, ⁎}

Source: In Computers in Biology and Medicine February 2025 185

When Texture Matters: Texture-Focused Cnns Outperform General Data Augmentation and Pretraining in Oral Cancer Detection

Authors: Wetzer, Elisabeth, Gay, Jo, Harlin, Hugo, Lindblad, Joakim, Sladoje, Natasa

Source: 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2020 IEEE 17th International Symposium on. :517-521 Apr, 2020

Relation: 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)

Oral cancer detection and interpretation: Deep multiple instance learning versus conventional deep single instance learning

Authors: Koriakina, Nadezhda, Sladoje, Nataša, Bašić, Vladimir, Lindblad, Joakim

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2202.01783

Cross-Modality Sub-Image Retrieval using Contrastive Multimodal Image Representations

Authors: Breznik, Eva, Wetzer, Elisabeth, Lindblad, Joakim, Sladoje, Nataša

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2201.03597

Cross-Sim-NGF: FFT-Based Global Rigid Multimodal Alignment of Image Volumes using Normalized Gradient Fields

Authors: Öfverstedt, Johan, Lindblad, Joakim, Sladoje, Nataša

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2110.10156

Fast computation of mutual information in the frequency domain with applications to global multimodal image alignment

Authors: Öfverstedt, Johan, Lindblad, Joakim, Sladoje, Nataša

Source: Pattern Recognition Letters, Vol. 159, pp. 196-203, 2022

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Electrical Engineering and Systems Science - Image and Video Processing, 92C55, 94A08, 94A15, 94A17, 68U10, 68W01

Access URL: http://arxiv.org/abs/2106.14699

Denoising of short exposure transmission electron microscopy images for ultrastructural enhancement

Authors: Bajic, Buda, Suveer, Amit, Gupta, Anindya, Pepic, Ivana, Lindblad, Joakim, Sladoje, Natasa, Sintorn, Ida-Maria

Source: 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) Biomedical Imaging (ISBI 2018), 2018 IEEE 15th International Symposium on. :921-925 Apr, 2018

Relation: 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)

Is Image-to-Image Translation the Panacea for Multimodal Image Registration? A Comparative Study

Authors: Lu, Jiahao, Öfverstedt, Johan, Lindblad, Joakim, Sladoje, Nataša

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2103.16262

INSPIRE: Intensity and spatial information-based deformable image registration

Authors: Öfverstedt, Johan, Lindblad, Joakim, Sladoje, Nataša

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2012.07208

CoMIR: Contrastive Multimodal Image Representation for Registration

Authors: Pielawski, Nicolas, Wetzer, Elisabeth, Öfverstedt, Johan, Lu, Jiahao, Wählby, Carolina, Lindblad, Joakim, Sladoje, Nataša

Source: NeurIPS 2020

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/2006.06325

Rotation-Equivariant Semantic Instance Segmentation on Biomedical Images
26th Medical image understanding and anylysis Conference, MIUA

Authors: Bernander, Karl Bengtsson, Lindblad, Joakim, Strand, Robin, Nyström, Ingela

Source: Lecture notes in computer science. 13413:283-297

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN607756307&indx=1&recIds=ETOCCN607756307