Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease

Authors: Zhou, Xin, Shen, Xiaotao, Johnson, Jethro S., Spakowicz, Daniel J., Agnello, Melissa, Zhou, Wenyu, Avina, Monica, Honkala, Alexander, Chleilat, Faye, Chen, Shirley Jingyi, Cha, Kexin, Leopold, Shana, Zhu, Chenchen, Chen, Lei, Lyu, Lin, Hornburg, Daniel, Wu, Si, Zhang, Xinyue, Jiang, Chao, Jiang, Liuyiqi, Jiang, Lihua, Jian, Ruiqi, Brooks, Andrew W., Wang, Meng, Contrepois, Kévin, Gao, Peng, Rose, Sophia Miryam Schüssler-Fiorenza, Tran, Thi Dong Binh, Nguyen, Hoan, Celli, Alessandra, Hong, Bo-Young, Bautista, Eddy J., Dorsett, Yair, Kavathas, Paula B., Zhou, Yanjiao, Sodergren, Erica, Weinstock, George M., Snyder, Michael P.

Source: In Cell Host & Microbe 10 April 2024 32(4):506-526

Interspecies commensal interactions have nonlinear impacts on host immunity

Authors: Rice, Tyler A. ¹, Bielecka, Agata A. ^{1, 6}, Nguyen, Mytien T. ¹, Rosen, Connor E. ^{1, 7}, Song, Deguang ¹, Sonnert, Nicole D. ¹, Yang, Yi ¹, Cao, Yiyun ¹, Khetrapal, Varnica ¹, Catanzaro, Jason R. ², Martin, Anjelica L. ¹, Rashed, Saleh A. ^{1, 8}, Leopold, Shana R. ¹, Hao, Liming ³, Yu, Xuezhu ⁴, van Dijk, David ⁴, Ring, Aaron M. ¹, Flavell, Richard A. ¹, de Zoete, Marcel R. ⁵, Palm, Noah W. ^{1, ∗}

Source: In Cell Host & Microbe 13 July 2022 30(7):988-1002

Translocating gut pathobiont Enterococcus gallinarum induces TH17 and IgG3 anti-RNA–directed autoimmunity in mouse and human.

Authors: Gronke, Konrad, Nguyen, Mytien, Fuhrmann, Helen, Santamaria de Souza, Noemi, Schumacher, Julia, Pereira, Márcia S., Löschberger, Ulrike, Brinkhege, Anna, Becker, Nathalie J., Yang, Yi, Sonnert, Nicole, Leopold, Shana, Martin, Anjelica L., von Münchow-Klein, Lilly, Pessoa Rodrigues, Cecilia, Cansever, Dilay, Hallet, Remy, Richter, Kirsten, Schubert, David A., Daniel, Guillaume M.

Source: Science Translational Medicine; 2/5/2025, Vol. 17 Issue 784, p1-17, 17p

Subject Terms: MONONUCLEAR leukocytes, T cell receptors, AUTOIMMUNE hepatitis, BACTERIAL RNA, SYSTEMIC lupus erythematosus

Integrative Personal Omics Profiles during Periods of Weight Gain and Loss

Authors: Piening, Brian D., Zhou, Wenyu, Contrepois, Kévin, Röst, Hannes, Gu Urban, Gucci Jijuan, Mishra, Tejaswini, Hanson, Blake M., Bautista, Eddy J., Leopold, Shana, Yeh, Christine Y., Spakowicz, Daniel, Banerjee, Imon, Chen, Cynthia, Kukurba, Kimberly, Perelman, Dalia, Craig, Colleen, Colbert, Elizabeth, Salins, Denis, Rego, Shannon, Lee, Sunjae, Zhang, Cheng, Wheeler, Jessica, Sailani, M. Reza, Liang, Liang, Abbott, Charles, Gerstein, Mark, Mardinoglu, Adil, Smith, Ulf, Rubin, Daniel L., Pitteri, Sharon, Sodergren, Erica, McLaughlin, Tracey L., Weinstock, George M., Snyder, Michael P.

Source: In Cell Systems 28 February 2018 6(2):157-170

A longitudinal big data approach for precision health

Authors: Schüssler-Fiorenza Rose, Sophia, Contrepois, Kévin, Moneghetti, Kegan, Zhou, Wenyu, Mishra, Tejaswini, Mataraso, Samson, Dagan-Rosenfeld, Orit, Ganz, Ariel, Dunn, Jessilyn, Hornburg, Daniel, Rego, Shannon, Perelman, Dalia, Ahadi, Sara, Sailani, M., Zhou, Yanjiao, Leopold, Shana, Chen, Jieming, Ashland, Melanie, Christle, Jeffrey, Avina, Monika, Limcaoco, Patricia, Ruiz, Camilo, Tan, Marilyn, Butte, Atul, Weinstock, George, Slavich, George, Sodergren, Erica, McLaughlin, Tracey, Haddad, Francois, Snyder, Michael

Source: Nature medicine. 25(5):792-804

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138191761.0x000001&indx=1&recIds=ETOCvdc_100138191761.0x000001

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

Authors: Johnson, Jethro, Spakowicz, Daniel, Hong, Bo-Young, Petersen, Lauren, Demkowicz, Patrick, Chen, Lei, Leopold, Shana, Hanson, Blake, Agresta, Hanako, Gerstein, Mark, Sodergren, Erica, Weinstock, George

Source: Nature communications. 10(1):1-11

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190904207.0x000001&indx=1&recIds=ETOCvdc_100190904207.0x000001

Longitudinal multi-omics of host–microbe dynamics in prediabetes

Authors: Zhou, Wenyu, Sailani, M., Contrepois, Kévin, Zhou, Yanjiao, Ahadi, Sara, Leopold, Shana, Zhang, Martin, Rao, Varsha, Avina, Monika, Mishra, Tejaswini, Johnson, Jethro, Lee-McMullen, Brittany, Chen, Songjie, Metwally, Ahmed, Tran, Thi Dong Binh, Nguyen, Hoan, Zhou, Xin, Albright, Brandon, Hong, Bo-Young, Petersen, Lauren, Bautista, Eddy, Hanson, Blake, Chen, Lei, Spakowicz, Daniel, Bahmani, Amir, Salins, Denis, Leopold, Benjamin, Ashland, Melanie, Dagan-Rosenfeld, Orit, Rego, Shannon, Limcaoco, Patricia, Colbert, Elizabeth, Allister, Candice, Perelman, Dalia, Craig, Colleen, Wei, Eric, Chaib, Hassan, Hornburg, Daniel, Dunn, Jessilyn, Liang, Liang, Rose, Sophia, Kukurba, Kim, Piening, Brian, Rost, Hannes, Tse, David, McLaughlin, Tracey, Sodergren, Erica, Weinstock, George, Snyder, Michael

Source: Nature. 569(7758):663-671

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100153454887.0x000001&indx=1&recIds=ETOCvdc_100153454887.0x000001

A Precise Reconstruction of the Emergence and Constrained Radiations of Escherichia coli 0157 Portrayed by Backbone Concatenomic Analysis

Authors: Leopold, Shana R., Magrini, Vincent, Holt, Nicholas J., Shaikh, Nurmohammad, Mardis, Elaine R., Cagno, Joseph, Ogura, Yoshitoshi, Iguchi, Atsushi, Hayashi, Tetsuya, Mellmann, Alexander, Karch, Helge, Besser, Thomas E., Sawyer, Stanley A., Whittam, Thomas S., Tarr, Phillip I., Curtiss, Roy

Source: Proceedings of the National Academy of Sciences of the United States of America, 2009 May . 106(21), 8713-8718.

Access URL: https://www.jstor.org/stable/40482747

A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis.

Authors: Leopold, Shana R., Magrini, Vincent, Holt, Nicholas J.

Source: Proceedings of the National Academy of Sciences of the United States of America; May 26 2009, Vol. 106 Issue 21, p8713-8718, 6p

Murine Model for Measuring Effects of Humanized-Dosing of Antibiotics on the Gut Microbiome.

Authors: Leopold, Shana R., Abdelraouf, Kamilia, Nicolau, David P., Agresta, Hanako, Johnson, Jethro, Teter, Kathleen, Dunne, Wm Michael, Broadwell, David, van Belkum, Alex, Schechter, Lisa M., Sodergren, Erica J., Weinstock, George M.

Source: Frontiers in Microbiology; 2/17/2022, Vol. 12, p1-17, 17p

Subject Terms: ANTIBIOTICS, TIME-of-flight mass spectrometry, GUT microbiome, METABOLOMIC fingerprinting, PRINCIPAL components analysis, HUMAN microbiota

Obscured phylogeny and possible recombinational dormancy in Escherichia coli

Authors: Sawyer Stanley A, Leopold Shana R, Whittam Thomas S, Tarr Phillip I

Source: BMC Evolutionary Biology, Vol 11, Iss 1, p 183 (2011)

Subject Terms: Definition of Species, Phylogeny, Recombination, Evolution, QH359-425

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2148/11/183; https://doaj.org/toc/1471-2148

Access URL: https://doaj.org/article/1e9f463cee9f4a7ba62acd35d3219dd2

Identification of Intermediate in Evolutionary Model of Enterohemorrhagic Escherichia coli O157.

Authors: Jenke, Christian¹, Leopold, Shana R.¹, Weniger, Thomas², Rothgänger, Jörg³, Harmsen, Dag², Karch, Helge¹, Mellmann, Alexander¹ mellmann@uni-muenster.de

Source: Emerging Infectious Diseases. Apr2012, Vol. 18 Issue 4, p582-588. 7p. 1 Diagram, 1 Chart.

Subject Terms: *ESCHERICHIA coli O157:H7, *SINGLE nucleotide polymorphisms, *GENOMICS, *DEER, *PATHOGENIC microorganisms, *DIARRHEA

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Further evidence of constrained radiation in the evolution of pathogenic Escherichia coli O157:H7

Authors: Leopold, Shana R., Shaikh, Nurmohammad, Tarr, Phillip I.

Source: In Infection, Genetics and Evolution December 2010 10(8):1282-1285

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Enterohemorrhagic E. coli (EHEC): Environmental-Vehicle-Human Interface.

Authors: Karch, Helge, Leopold, Shana R., Kossow, Annelene, Mellmann, Alexander, Köck, Robin, Bauwens, Andreas

Source: Zoonoses-Infections Affecting Humans & Animals; 2015, p235-248, 14p

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