A framework for hyperparameter optimization of genomic cloud pipelines: improving the performance of GATK VETS variant filtration

Authors: Dou, Wanying, Lee, Samuel K., Garimella, Kiran V.

Source: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :1475-1478 Dec, 2024

Relation: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Controlling for Unobserved Confounding with Large Language Model Classification of Patient Smoking Status

Authors: Lee, Samuel, Wood-Doughty, Zach

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2411.03004

Federated Learning of Electronic Health Records to Improve Mortality Prediction in Hospitalized Patients With COVID-19: Machine Learning Approach

Authors: Vaid, Akhil, Jaladanki, Suraj K, Xu, Jie, Teng, Shelly, Kumar, Arvind, Lee, Samuel, Somani, Sulaiman, Paranjpe, Ishan, De Freitas, Jessica K, Wanyan, Tingyi, Johnson, Kipp W, Bicak, Mesude, Klang, Eyal, Kwon, Young Joon, Costa, Anthony, Zhao, Shan, Miotto, Riccardo, Charney, Alexander W, Böttinger, Erwin, Fayad, Zahi A, Nadkarni, Girish N, Wang, Fei, Glicksberg, Benjamin S

Source: JMIR Medical Informatics, Vol 9, Iss 1, p e24207 (2021)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: http://medinform.jmir.org/2021/1/e24207/; https://doaj.org/toc/2291-9694

Access URL: https://doaj.org/article/11f1e0ca04304420af2f5d46261fc8ee

Machine Learning to Predict Mortality and Critical Events in a Cohort of Patients With COVID-19 in New York City: Model Development and Validation

Authors: Vaid, Akhil, Somani, Sulaiman, Russak, Adam J, De Freitas, Jessica K, Chaudhry, Fayzan F, Paranjpe, Ishan, Johnson, Kipp W, Lee, Samuel J, Miotto, Riccardo, Richter, Felix, Zhao, Shan, Beckmann, Noam D, Naik, Nidhi, Kia, Arash, Timsina, Prem, Lala, Anuradha, Paranjpe, Manish, Golden, Eddye, Danieletto, Matteo, Singh, Manbir, Meyer, Dara, O'Reilly, Paul F, Huckins, Laura, Kovatch, Patricia, Finkelstein, Joseph, Freeman, Robert M., Argulian, Edgar, Kasarskis, Andrew, Percha, Bethany, Aberg, Judith A, Bagiella, Emilia, Horowitz, Carol R, Murphy, Barbara, Nestler, Eric J, Schadt, Eric E, Cho, Judy H, Cordon-Cardo, Carlos, Fuster, Valentin, Charney, Dennis S, Reich, David L, Bottinger, Erwin P, Levin, Matthew A, Narula, Jagat, Fayad, Zahi A, Just, Allan C, Charney, Alexander W, Nadkarni, Girish N, Glicksberg, Benjamin S

Source: Journal of Medical Internet Research, Vol 22, Iss 11, p e24018 (2020)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://www.jmir.org/2020/11/e24018; https://doaj.org/toc/1438-8871

Access URL: https://doaj.org/article/d26bd88c400844cfbae830c0f468bbfa

Using Robotics to Create a Cleaner Environment

Authors: Chung, Jeremy, Zhang, Alex J, Onadipe, Siju, Shah, Kavya, Makkapati, Varsha, Dahiwadkar, Pooja, Lee, Samuel

Source: 2024 IEEE Integrated STEM Education Conference (ISEC) Integrated STEM Education Conference (ISEC), 2024 IEEE. :1-1 Mar, 2024

Relation: 2024 IEEE Integrated STEM Education Conference (ISEC)

Modular artificial skeletal muscle actuators and exoskeletons powered thereby

Lipid nanoparticle delivery of TALEN mRNA targeting LPA causes gene disruption and plasma lipoprotein(a) reduction in transgenic mice

Authors: Garcia, Daniel A. ^{1, ∗}, Pierre, Abigail F. ¹, Quirino, Linda ¹, Acharya, Grishma ¹, Vasudevan, Aishwarya ¹, Pei, Yihua ¹, Chung, Emily ¹, Chang, Jason Y.H. ¹, Lee, Samuel ¹, Endow, Michael ¹, Kuakini, Kristen ¹, Bresnahan, Michael ¹, Chumpitaz, Maria ¹, Rajappan, Kumar ¹, Parker, Suezanne ¹, Chivukula, Pad ¹, Boehme, Stefen A. ^{1, ∗∗}, Diaz-Trelles, Ramon ¹

Source: In Molecular Therapy 8 January 2025 33(1):90-103

Enhanced expression of the myogenic factor Myocyte enhancer factor-2 in imaginal disc myoblasts activates a partial, but incomplete, muscle development program

Authors: Trujillo, Elizabeth M., Lee, Samuel R., Aguayo, Antonio, Torosian, Tylee C., Cripps, Richard M.

Source: In Developmental Biology December 2024 516:82-95

An Inductorless 5-GHz Differential Dual Regulated Cross-Cascode Transimpedance Amplifier using 40 nm CMOS

Authors: Song Lee, Samuel Bai, Liu, Hang, Yu, Xiaopeng, Chen, Jer-Ming, Yeo, Kiat Seng

Source: 2019 IEEE 13th International Conference on ASIC (ASICON) ASIC (ASICON), 2019 IEEE 13th International Conference on. :1-4 Oct, 2019

Relation: 2019 IEEE 13th International Conference on ASIC (ASICON)

Associations between Statin Use and Glaucoma in the All of Us Research Program

Authors: Lee, Samuel Y., Paul, Megan E., Coleman, Anne L., Kitayama, Ken, Yu, Fei, Pan, Deyu, Tseng, Victoria L.

Source: In Ophthalmology Glaucoma November-December 2024 7(6):563-571

Varied coordination geometries of an Alane/Tris(phosphine) ligand from its Reactions with Pt(0) and Au(I)

Authors: Lee, Samuel R., Adolph, Brandy R., Bhuvanesh, Nattamai, Ozerov, Oleg V.

Source: In Polyhedron 1 November 2024 262

Clinical outcomes of esophageal squamous cell carcinoma in patients with cirrhosis

Authors: Ryu, Dae Gon, Yun, Mi Sook, Liu, Hongqun, Lee, Samuel S., Lee, Sangjune Laurence

Source: In Clinical and Translational Radiation Oncology September 2024 48

An Inductorless 6-GHz Variable Gain Differential Transimpedance Amplifier in 0.18-μm SiGe BiCMOS

Authors: Lee, Samuel Bai Song, Liu, Hang, Yeo, Kiat Seng

Source: 2019 IEEE International Symposium on Circuits and Systems (ISCAS) Circuits and Systems (ISCAS), 2019 IEEE International Symposium on. :1-5 May, 2019

Relation: 2019 IEEE International Symposium on Circuits and Systems (ISCAS)

Transparency in Artificial Intelligence Reporting in Ophthalmology-A Scoping Review

Authors: Chen, Dinah, Geevarghese, Alexi, Lee, Samuel, Plovnick, Caitlin, Elgin, Cansu, Zhou, Raymond, Oermann, Eric, Aphinyonaphongs, Yindalon, Al-Aswad, Lama A.

Source: In Ophthalmology Science July-August 2024 4(4)

Bioequivalence prediction with small-scale biphasic dissolution and simultaneous dissolution-permeation apparatus—An aripiprazole case study

Authors: Kádár, Szabina, Kennedy, Andrew, Lee, Samuel, Ruiz, Rebeca, Farkas, Attila, Tőzsér, Petra, Csicsák, Dóra, Tóth, Gergő, Sinkó, Bálint, Borbás, Enikő

Source: In European Journal of Pharmaceutical Sciences 1 July 2024 198

Optical rifle boresight alignment apparatus and method

Gut-derived ammonia contributes to alcohol-related fatty liver development via facilitating ethanol metabolism and provoking ATF4-dependent de novo lipogenesis activation

Authors: Song, Qing, Hwang, Chueh-Lung, Li, Yanhui, Wang, Jun, Park, Jooman, Lee, Samuel M., Sun, Zhaoli, Sun, Jun, Xia, Yinglin, Nieto, Natalia, Cordoba-Chacon, Jose, Jiang, Yuwei, Dou, Xiaobing, Song, Zhenyuan

Source: In Metabolism February 2024 151

Cardiomyopathy in cirrhosis: From pathophysiology to clinical care

Authors: Liu, Hongqun, Naser, Jwan A., Lin, Grace, Lee, Samuel S.

Source: In JHEP Reports January 2024 6(1)

Human Trafficking and Regulating Prostitution

Authors: Lee, Samuel, Persson, Petra

Source: American Economic Journal: Economic Policy, 2022 Aug 01. 14(3), 87-127.

Access URL: https://www.jstor.org/stable/27154450

Litter traps: A comparison of four marine habitats as sinks for anthropogenic marine macro-litter in Singapore

Authors: Fong, Jenny, Lee, Samuel Hsien Rong, Sun, Yuchen, Lim, Cheng Ling, Tan, Yean Ai Jolin, Tan, Yi Hong, Neo, Mei Lin

Source: In Marine Pollution Bulletin November 2023 196