Secretomes of medically important fungi reflect morphological and phylogenetic diversity

Authors: Varona, Sarai, Lavín, José L., Oguiza, José A.

Source: In Fungal Biology November 2020 124(11):915-923

Signal Integration and Transcriptional Regulation of the Inflammatory Response Mediated by the GM-/M-CSF Signaling Axis in Human Monocytes

Authors: Rodriguez, Ramon M., Suarez-Alvarez, Beatriz, Lavín, Jose L., Ascensión, Alex M., Gonzalez, Monika, Lozano, Juan J., Raneros, Aroa B., Bulnes, Paula D., Vidal-Castiñeira, Jose R., Huidobro, Covadonga, Martin-Martin, Cristina, Sanz, Ana B., Ruiz-Ortega, Marta, Puig-Kröger, Amaya, Corbí, Angel L., Araúzo-Bravo, Marcos J., Aransay, Ana M., Lopez-Larrea, Carlos

Source: In Cell Reports 22 October 2019 29(4):860-872

Gut microbiome and serum metabolome analyses identify molecular biomarkers and altered glutamate metabolism in fibromyalgia

Authors: Clos-Garcia, Marc, Andrés-Marin, Naiara, Fernández-Eulate, Gorka, Abecia, Leticia, Lavín, José L., van Liempd, Sebastiaan, Cabrera, Diana, Royo, Félix, Valero, Alejandro, Errazquin, Nerea, Vega, María Cristina Gómez, Govillard, Leila, Tackett, Michael R., Tejada, Genesis, Gónzalez, Esperanza, Anguita, Juan, Bujanda, Luis, Orcasitas, Ana María Callejo, Aransay, Ana M., Maíz, Olga, López de Munain, Adolfo, Falcón-Pérez, Juan Manuel

Source: In eBioMedicine August 2019 46:499-511

SOX17 regulates cholangiocyte differentiation and acts as a tumor suppressor in cholangiocarcinoma

Authors: Merino-Azpitarte, Maite, Lozano, Elisa, Perugorria, María J., Esparza-Baquer, Aitor, Erice, Oihane, Santos-Laso, Álvaro, O'Rourke, Colm J., Andersen, Jesper B., Jiménez-Agüero, Raúl, Lacasta, Adelaida, D'Amato, Mauro, Briz, Óscar, Jalan-Sakrikar, Nidhi, Huebert, Robert C., Thelen, Kristen M., Gradilone, Sergio A., Aransay, Ana M., Lavín, José L., Fernández-Barrena, Maite G., Matheu, Ander, Marzioni, Marco, Gores, Gregory J., Bujanda, Luis, Marin, José J.G., Banales, Jesús M.

Source: In Journal of Hepatology July 2017 67(1):72-83

Progressive loss of hybrid histidine kinase genes during the evolution of budding yeasts (Saccharomycotina)

Authors: Hérivaux, Anaïs, Lavín, José L., de Bernonville, Thomas Dugé, Vandeputte, Patrick, Bouchara, Jean-Philippe, Gastebois, Amandine, Oguiza, José A., Papon, Nicolas

Source: Current genetics. 64(4):841-851

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125424069.0x000001&indx=1&recIds=ETOCvdc_100125424069.0x000001

Epigenetic Networks Regulate the Transcriptional Program in Memory and Terminally Differentiated CD8^+ T Cells

Authors: Rodriguez, Ramon M., Suarez-Alvarez, Beatriz, Lavín, José L., Mosén-Ansorena, David, Raneros, Aroa Baragaño, Márquez-Kisinousky, Leonardo, Aransay, Ana M., Lopez-Larrea, Carlos

Source: Journal of immunology. 198(2):937-949

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN609572538&indx=1&recIds=ETOCRN609572538

Dual-histidine kinases in basidiomycete fungi

Authors: Lavín, José L., Sarasola-Puente, Vanessa, Ramírez, Lucía, Pisabarro, Antonio G., Oguiza, José A.

Source: In Comptes rendus - Biologies February 2014 337(2):111-116

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

Authors: Corrochano, Luis M., Kuo, Alan, Marcet-Houben, Marina, Polaino, Silvia, Salamov, Asaf, Villalobos-Escobedo, José M., Grimwood, Jane, Álvarez, M. Isabel, Avalos, Javier, Bauer, Diane, Benito, Ernesto P., Benoit, Isabelle, Burger, Gertraud, Camino, Lola P., Cánovas, David, Cerdá-Olmedo, Enrique, Cheng, Jan-Fang, Domínguez, Angel, Eliáš, Marek, Eslava, Arturo P., Glaser, Fabian, Gutiérrez, Gabriel, Heitman, Joseph, Henrissat, Bernard, Iturriaga, Enrique A., Lang, B. Franz, Lavín, José L., Lee, Soo Chan, Li, Wenjun, Lindquist, Erika, López-García, Sergio, Luque, Eva M., Marcos, Ana T., Martin, Joel, McCluskey, Kevin, Medina, Humberto R., Miralles-Durán, Alejandro, Miyazaki, Atsushi, Muñoz-Torres, Elisa, Oguiza, José A., Ohm, Robin A., Olmedo, María, Orejas, Margarita, Ortiz-Castellanos, Lucila, Pisabarro, Antonio G., Rodríguez-Romero, Julio, Ruiz-Herrera, José, Ruiz-Vázquez, Rosa, Sanz, Catalina, Schackwitz, Wendy, Shahriari, Mahdi, Shelest, Ekaterina, Silva-Franco, Fátima, Soanes, Darren, Syed, Khajamohiddin, Tagua, Víctor G., Talbot, Nicholas J., Thon, Michael R., Tice, Hope, de Vries, Ronald P., Wiebenga, Ad, Yadav, Jagjit S., Braun, Edward L., Baker, Scott E., Garre, Victoriano, Schmutz, Jeremy, Horwitz, Benjamin A., Torres-Martínez, Santiago, Idnurm, Alexander, Herrera-Estrella, Alfredo, Gabaldón, Toni, Grigoriev, Igor V.

Source: Current biology. 26(12):1577-1584

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100052216937.0x000001&indx=1&recIds=ETOCvdc_100052216937.0x000001

Two-component signal transduction in Agaricus bisporus: A comparative genomic analysis with other basidiomycetes through the web-based tool BASID2CS

Authors: Lavín, José L., García-Yoldi, Alberto, Ramírez, Lucía, Pisabarro, Antonio G., Oguiza, José A.

Source: In Fungal Genetics and Biology June 2013 55:77-84

Cross-sectional study of human coding- and non-coding RNAs in progressive stages of Helicobacter pylori infection

Authors: Lario, Sergio, Ramírez-Lázaro, María J., González-Lahera, Aintzane, Lavín, José L., Vila-Casadesús, Maria, Quílez, María E., Brunet-Vega, Anna, Lozano, Juan J., Aransay, Ana M., Calvet, Xavier

Source: Scientific data. 7(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174793852.0x000001&indx=1&recIds=ETOCvdc_100174793852.0x000001

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

Authors: Fernandez-Fueyo, Elena, Ruiz-Dueñas, Francisco J., Ferreira, Patricia, Floudas, Dimitrios, Hibbett, David S., Canessa, Paulo, Larrondo, Luis F., James, Tim Y., Seelenfreund, Daniela, Lobos, Sergio, Polanco, Rubén, Tello, Mario, Honda, Yoichi, Watanabe, Takahito, Watanabe, Takashi, San, Ryu Jae, Kubicek, Christian P., Schmoll, Monika, Gaskell, Jill, Hammel, Kenneth E., St. John, Franz J., Wymelenberg, Amber Vanden, Sabat, Grzegorz, BonDurant, Sandra Splinter, Syed, Khajamohiddin, Yadav, Jagjit S., Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Lavín, José L., Oguiza, José A., Perez, Gumer, Pisabarro, Antonio G., Ramirez, Lucia, Santoyo, Francisco, Master, Emma, Coutinho, Pedro M., Henrissat, Bernard, Lombard, Vincent, Magnuson, Jon Karl, Kües, Ursula, Hori, Chiaki, Igarashi, Kiyohiko, Samejima, Masahiro, Held, Benjamin W., Barry, Kerrie W., LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lucas, Susan M., Riley, Robert, Salamov, Asaf A., Hoffmeister, Dirk, Schwenk, Daniel, Hadar, Yitzhak, Yarden, Oded, de Vries, Ronald P., Wiebenga, Ad, Stenlid, Jan, Eastwood, Daniel, Grigoriev, Igor V., Berka, Randy M., Blanchette, Robert A., Kersten, Phil, Martinez, Angel T., Vicuna, Rafael, Cullen, Dan

Source: Proceedings of the National Academy of Sciences of the United States of America, 2012 Apr 01. 109(14), 5458-5463.

Access URL: https://www.jstor.org/stable/41588176

The Plant Cell Wall—Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

Authors: Eastwood, Daniel C., Floudas, Dimitrios, Binder, Manfred, Majcherczyk, Andrzej, Schneider, Patrick, Aerts, Andrea, Asiegbu, Fred O., Baker, Scott E., Barry, Kerrie, Bendiksby, Mika, Blumentritt, Melanie, Coutinho, Pedro M., Cullen, Dan, de Vries, Ronald P., Gathman, Allen, Goodell, Barry, Henrissat, Bernard, Ihrmark, Katarina, Kauserud, Hävard, Kohler, Annegret, LaButti, Kurt, Lapidus, Alla, Lavin, José L., Lee, Yong-Hwan, Lindquist, Erika, Lilly, Walt, Lucas, Susan, Morin, Emmanuelle, Murat, Claude, Oguiza, José A., Park, Jongsun, Pisabarro, Antonio G., Riley, Robert, Rosling, Anna, Salamov, Asaf, Schmidt, Olaf, Schmutz, Jeremy, Skrede, Inger, Stenlid, Jan, Wiebenga, Ad, Xie, Xinfeng, Kües, Ursula, Hibbett, David S., Hoffmeister, Dirk, Högberg, Nils, Martin, Francis, Grigoriev, Igor V., Watkinson, Sarah C.

Source: Science, 2011 Aug 01. 333(6043), 762-765.

Access URL: http://dx.doi.org/10.1126/science.1205411

Genome, Transcriptome, and Secretome Analysis of Wood Decay Fungus Postia placenta Supports Unique Mechanisms of Lignocellulose Conversion

Authors: Martinez, Diego, Challacombe, Jean, Morgenstern, Ingo, Hibbett, David, Schmoll, Monika, Kubicek, Christian P., Ferreira, Patricia, Ruiz-Duenas, Francisco J., Martinez, Angel T., Kersten, Phil, Hammel, Kenneth E., Vanden Wymelenberg, Amber, Gaskell, Jill, Lindquist, Erika, Sabat, Grzegorz, BonDurant, Sandra Splinter, Larrondo, Luis F., Canessa, Paulo, Vicuna, Rafael, Yadav, Jagjit, Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Pisabarro, Antonio G., Lavin, José L., Oguiza, José A., Master, Emma, Henrissat, Bernard, Coutinho, Pedro M., Harris, Paul, Magnuson, Jon Karl, Baker, Scott E., Bruno, Kenneth, Kenealy, William, Hoegger, Patrik J., Kües, Ursula, Ramaiya, Preethi, Lucas, Susan, Salamov, Asaf, Shapiro, Harris, Tu, Hank, Chee, Christine L., Misra, Monica, Xie, Gary, Teter, Sarah, Yaver, Debbie, James, Tim, Mokrejs, Martin, Pospisek, Martin, Grigoriev, Igor V., Brettin, Thomas, Rokhsar, Dan, Berka, Randy, Cullen, Dan, Dixon, Richard A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2009 Feb 01. 106(6), 1954-1959.

Access URL: https://www.jstor.org/stable/40421704

Comparative genomics of the oxidative phosphorylation system in fungi

Authors: Lavín, José L., Oguiza, José A., Ramírez, Lucía, Pisabarro, Antonio G.

Source: In Fungal Genetics and Biology 2008 45(9):1248-1256

Immunogenicity of Mycobacterial Extracellular Vesicles Isolated From Host-Related Conditions Informs About Tuberculosis Disease Status.

Authors: Schirmer, Sebastian, Rauh, Lucas, Alebouyeh, Sogol, Delgado-Velandia, Mario, Salgueiro, Vivian C., Lerma, Laura, Serrano-Mestre, José L., Azkargorta, Mikel, Elortza, Félix, Lavín, José L., García, Maria Jesus, Tórtola Fernández, María Teresa, Gola, Susanne, Prados-Rosales, Rafael

Source: Frontiers in Microbiology; 6/22/2022, Vol. 13, p1-13, 13p

Subject Terms: TUBERCULOSIS, EXTRACELLULAR vesicles, NUCLEIC acid amplification techniques, MYCOBACTERIUM tuberculosis, VESICLES (Cytology), IMMUNE response

Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae

Authors: Ussery David W, Resano Ohiana, Kiil Kristoffer, Lavín José L, Oguiza José A

Source: BMC Genomics, Vol 8, Iss 1, p 397 (2007)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/8/397; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/cd52b53c1ec94832b5de8c04d447bf2f

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FUNGALOXPHOS: An integrated database for oxidative phosphorylation in fungi

Authors: Lavín, José L., Marcet-Houben, Marina, Gutiérrez-Vázquez, Raquel L., Ramírez, Lucía, Pisabarro, Antonio G., Gabaldón, Toni, Oguiza, José A.

Source: In Mitochondrion July 2013 13(4):357-359