BixBench: a Comprehensive Benchmark for LLM-based Agents in Computational Biology

Authors: Mitchener, Ludovico, Laurent, Jon M, Tenmann, Benjamin, Narayanan, Siddharth, Wellawatte, Geemi P, White, Andrew, Sani, Lorenzo, Rodriques, Samuel G

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2503.00096

Language agents achieve superhuman synthesis of scientific knowledge

Authors: Skarlinski, Michael D., Cox, Sam, Laurent, Jon M., Braza, James D., Hinks, Michaela, Hammerling, Michael J., Ponnapati, Manvitha, Rodriques, Samuel G., White, Andrew D.

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Information Retrieval, Physics - Physics and Society

Access URL: http://arxiv.org/abs/2409.13740

LAB-Bench: Measuring Capabilities of Language Models for Biology Research

Authors: Laurent, Jon M., Janizek, Joseph D., Ruzo, Michael, Hinks, Michaela M., Hammerling, Michael J., Narayanan, Siddharth, Ponnapati, Manvitha, White, Andrew D., Rodriques, Samuel G.

Subject Terms: Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2407.10362

A new upper limit on the axion-photon coupling with an extended CAST run with a Xe-based Micromegas detector

Authors: CAST Collaboration, Altenmüller, K., Anastassopoulos, V., Arguedas-Cuendis, S., Aune, S., Baier, J., Barth, K., Bräuninger, H., Cantatore, G., Caspers, F., Castel, J. F., Çetin, S. A., Christensen, F., Cogollos, C., Dafni, T., Davenport, M., Decker, T. A., Desch, K., Díez-Ibáñez, D., Döbrich, B., Ferrer-Ribas, E., Fischer, H., Funk, W., Galán, J., García, J. A., Gardikiotis, A., Giomataris, I., Golm, J., Hailey, C. H., Hasinoff, M. D., Hoffmann, D. H. H., Irastorza, I. G., Jacoby, J., Jakobsen, A. C., Jakovčić, K., Kaminski, J., Karuza, M., Kostoglou, S., Krieger, C., Lakić, B., Laurent, J. M., Luzón, G., Malbrunot, C., Margalejo, C., Maroudas, M., Miceli, L., Mirallas, H., Navarro, P., Obis, L., Özbey, A., Özbozduman, K., Papaevangelou, T., Pérez, O., Pivovaroff, M. J., Rosu, M., Ruiz-Chóliz, E., Ruz, J., Schmidt, S., Schumann, M., Semertzidis, Y. K., Solanki, S. K., Stewart, L., Vafeiadis, T., Vogel, J. K., Zioutas, K.

Source: Phys. Rev. Lett. 133, 221005, 2024

Subject Terms: High Energy Physics - Experiment

Access URL: http://arxiv.org/abs/2406.16840

The daily modulations and broadband strategy in axion searches. An application with CAST-CAPP detector

Authors: Adair, C. M., Altenmüller, K., Anastassopoulos, V., Cuendis, S. Arguedas, Baier, J., Barth, K., Belov, A., Bozicevic, D., Bräuninger, H., Cantatore, G., Caspers, F., Castel, J. F., Çetin, S. A., Chung, W., Choi, H., Choi, J., Dafni, T., Davenport, M., Dermenev, A., Desch, K., Döbrich, B., Fischer, H., Funk, W., Galan, J., Gardikiotis, A., Gninenko, S., Golm, J., Hasinoff, M. D., Hoffmann, D. H. H., Ibáñez, D. Díez, Irastorza, I. G., Jakovčić, K., Kaminski, J., Karuza, M., Krieger, C., Kutlu, Ç., Lakić, B., Laurent, J. M., Lee, J., Lee, S., Luzón, G., Margalejo, C., Maroudas, M., Miceli, L., Mirallas, H., Obis, L., Özbey, A., Özbozduman, K., Pivovaroff, M. J., Rosu, M., Ruz, J., Ruiz-Chóliz, E., Schmidt, S., Semertzidis, Y. K., Solanki, S. K., Stewart, L., Tsagris, I., Vafeiadis, T., Vogel, J. K., Vretenar, M., Youn, S., Zhitnitsky, A., Zioutas, K.

Subject Terms: High Energy Physics - Experiment, Astrophysics - Instrumentation and Methods for Astrophysics, High Energy Physics - Phenomenology, Physics - Instrumentation and Detectors

Access URL: http://arxiv.org/abs/2405.10972

Directed Evolution of Microorganisms for Engineered Living Materials

Authors: Laurent, Julie M., Jain, Ankit, Kan, Anton, Steinacher, Mathias, Casimiro, Nadia Enrriquez, Stavrakis, Stavros, deMello, Andrew J., Studart, André R.

Subject Terms: Physics - Biological Physics, Condensed Matter - Materials Science, Condensed Matter - Soft Condensed Matter, Quantitative Biology - Populations and Evolution

Access URL: http://arxiv.org/abs/2311.13342

Maximum Likelihood Filtering for Particle Tracking in Turbulent Flows

Authors: Kearney, Griffin M., Laurent, Kasey M., Kearney, Reece V.

Subject Terms: Physics - Fluid Dynamics, Mathematics - Optimization and Control

Access URL: http://arxiv.org/abs/2305.14213

Search for Dark Matter Axions with CAST-CAPP

Authors: Adair, C. M., Altenmüller, K., Anastassopoulos, V., Cuendis, S. Arguedas, Baier, J., Barth, K., Belov, A., Bozicevic, D., Bräuninger, H., Cantatore, G., Caspers, F., Castel, J. F., Çetin, S. A., Chung, W., Choi, H., Choi, J., Dafni, T., Davenport, M., Dermenev, A., Desch, K., Döbrich, B., Fischer, H., Funk, W., Galan, J., Gardikiotis, A., Gninenko, S., Golm, J., Hasinoff, M. D., Hoffmann, D. H. H., Ibáñez, D. Díez, Irastorza, I. G., Jakovčić, K., Kaminski, J., Karuza, M., Krieger, C., Kutlu, Ç., Lakić, B., Laurent, J. M., Lee, J., Lee, S., Luzón, G., Malbrunot, C., Margalejo, C., Maroudas, M., Miceli, L., Mirallas, H., Obis, L., Özbey, A., Özbozduman, K., Pivovaroff, M. J., Rosu, M., Ruz, J., Ruiz-Chóliz, E., Schmidt, S., Schumann, M., Semertzidis, Y. K., Solanki, S. K., Stewart, L., Tsagris, I., Vafeiadis, T., Vogel, J. K., Vretenar, M., Youn, S., Zioutas, K.

Source: Nature Commun. 13, 6180 (2022)

Subject Terms: High Energy Physics - Experiment, Physics - Instrumentation and Detectors

Access URL: http://arxiv.org/abs/2211.02902

First results of the CAST-RADES haloscope search for axions at 34.67 $\mu$eV

Authors: Melcón, A. Álvarez, Cuendis, S. Arguedas, Baier, J., Barth, K., Bräuniger, H., Calatroni, S., Cantatore, G., Caspers, F., Castel, J. F, Cetin, S. A., Cogollos, C., Dafni, T., Davenport, M., Dermenev, A., Desch, K., Díaz-Morcillo, A., Döbrich, B., Fischer, H., Funk, W., Gallego, J. D, Barceló, J. M García, Gardikiotis, A., Garza, J., Gimeno, B., Gninenko, S., Golm, J., Hasinoff, M., Hoffmann, D. H. H., Irastorza, I. G., Jakovčić, K., Kaminski, J., Karuza, M., Lakić, B., Laurent, J. M, Lozano-Guerrero, A., Luzón, G., Malbrunot, C., Maroudas, M., Miralda-Escudé, J., Mirallas, H., Miceli, L., Navarro, P., Ozbey, A., Özbozduman, K., Garay, C. Peña, Pivovaroff, M., Redondo, J., Ruz, J., Chóliz, E. Ruiz, Schmidt, S., Schumann, M., Semertzidis, Y., Solanki, S. K, Stewart, L., Tsagris, I., Vogel, T. Vafeiadis J. K., Widmann, E., Wuensch, W., Zioutas, K.

Source: J. High Energ. Phys. 2021, 75 (2021)

Subject Terms: High Energy Physics - Experiment

Access URL: http://arxiv.org/abs/2104.13798

Turbulence explains the accelerations of an eagle in natural flight

Authors: Laurent, Kasey M., Fogg, Bob, Ginsburg, Tobias, Halverson, Casey, Lanzone, Michael, Miller, Tricia A., Winkler, David W., Bewley, Gregory P.

Subject Terms: Quantitative Biology - Quantitative Methods, Physics - Biological Physics, Physics - Fluid Dynamics

Access URL: http://arxiv.org/abs/2102.12374

If negligence is intentionality’s cousin, recklessness is it’s sibling: Differentiating negligence and recklessness from accidents and intentional harm

Authors: Flick, Cassandra, Nuñez, Narina, Laurent, Sean M.

Source: In Journal of Experimental Social Psychology January 2024 110

First Results on the Search for Chameleons with the KWISP Detector at CAST

Authors: Cuendis, S. Arguedas, Baier, J., Barth, K., Baum, S., Bayirli, A., Belov, A., Bräuninger, H., Cantatore, G., Carmona, J. M., Castel, J. F., Cetin, S. A., Dafni, T., Davenport, M., Dermenev, A., Desch, K., Döbrich, B., Fischer, H., Funk, W., García, J. A., Gardikiotis, A., Garza, J. G., Gninenko, S., Hasinoff, M. D., Hoffmann, D. H. H., Iguaz, F. J., Irastorza, I. G., Jakovčić, K., Kaminski, J., Karuza, M., Krieger, C., Lakić, B., Laurent, J. M., Luzón, G., Maroudas, M., Miceli, L., Neff, S., Ortega, I., Ozbey, A., Pivovaroff, M. J., Rosu, M., Ruz, J., Chóliz, E. Ruiz, Schmidt, S., Schumann, M., Semertzidis, Y. K., Solanki, S. K., Stewart, L., Tsagris, I., Vafeiadis, T., Vogel, J. K., Vretenar, M., Yildiz, S. C., Zioutas, K.

Subject Terms: High Energy Physics - Experiment, Astrophysics - Cosmology and Nongalactic Astrophysics, Astrophysics - Solar and Stellar Astrophysics, Physics - Instrumentation and Detectors

Access URL: http://arxiv.org/abs/1906.01084

Development of machine-learning algorithms for 90-day and one-year mortality prediction in the elderly with femoral neck fractures based on the HEALTH and FAITH trials

Authors: Hidde Dijkstra, Jacobien H. F. Oosterhoff, Anouk van de Kuit, Frank F. A. IJpma, Joseph H. Schwab, Rudolf W. Poolman, Sheila Sprague, Sofia Bzovsky, Mohit Bhandari, Marc Swiontkowski, Emil H. Schemitsch, Job N. Doornberg, Laurent A. M. Hendrickx, On behalf of the Machine Learning Consortium, the HEALTH Investigators, and the FAITH Investigators

Source: Bone & Joint Open, Vol 4, Iss 3, Pp 168-181 (2023)

Subject Terms: machine learning, hip fracture, artificial intelligence, prediction models, shared decision-making, femoral neck fractures, hip fractures, brier scores, total hip arthroplasty (tha), hemiarthroplasty, logistic regression, composite, anesthesiologists, clinicians, cancer, Orthopedic surgery, RD701-811

File Description: electronic resource

Relation: https://doaj.org/toc/2633-1462

Access URL: https://doaj.org/article/d6d5e78388284b628c15157e950e9b16

Rapid, scalable, combinatorial genome engineering by marker-less enrichment and recombination of genetically engineered loci in yeast

Authors: Abdullah, Mudabir, Greco, Brittany M., Laurent, Jon M., Garge, Riddhiman K., Boutz, Daniel R., Vandeloo, Michelle, Marcotte, Edward M., Kachroo, Aashiq H.

Source: In Cell Reports Methods 22 May 2023 3(5)

Improved Search for Solar Chameleons with a GridPix Detector at CAST

Authors: Anastassopoulos, V., Aune, S., Barth, K., Belov, A., Bräuninger, H., Cantatore, G., Carmona, J. M., Castel, J. F., Cetin, S. A., Christensen, F., Dafni, T., Davenport, M., Dermenev, A., Desch, K., Döbrich, B., Eleftheriadis, C., Fanourakis, G., Ferrer-Ribas, E., Fischer, H., Funk, W., García, J. A., Gardikiotis, A., Garza, J. G., Gazis, E. N., Geralis, T., Giomataris, I., Gninenko, S., Hailey, C. J., Hasinoff, M. D., Hoffmann, D. H. H., Iguaz, F. J., Irastorza, I. G., Jakobsen, A., Jacoby, J., Jakovčić, K., Kaminski, J., Karuza, M., Kostoglou, S., Kralj, N., Krčmar, M., Krieger, C., Lakić, B., Laurent, J. M., Liolios, A., Ljubičić, A., Luzón, G., Maroudas, M., Miceli, L., Neff, S., Ortega, I., Papaevangelou, T., Paraschou, K., Pivovaroff, M. J., Raffelt, G., Rosu, M., Ruz, J., Chóliz, E. Ruiz, Savvidis, I., Schmidt, S., Semertzidis, Y. K., Solanki, S. K., Stewart, L., Vafeiadis, T., Vogel, J. K., Vretenar, M., Wuensch, W., Yildiz, S. C., Zioutas, K., Brax, P.

Subject Terms: High Energy Physics - Experiment, Physics - Instrumentation and Detectors

Access URL: http://arxiv.org/abs/1808.00066

Ameboid cell migration through regular arrays of micropillars under confinement

Authors: Sadjadi, Zeinab, Vesperini, Doriane, Laurent, Annalena M., Barnefske, Lena, Terriac, Emmanuel, Lautenschläger, Franziska, Rieger, Heiko

Source: In Biophysical Journal 6 December 2022 121(23):4615-4623

Assessment of potential SARS-CoV-2 virus integration into human genome reveals no significant impact on RT-qPCR COVID-19 testing

Authors: Briggs, Erica, Ward, William, Rey, Sol, Law, Dylan, Nelson, Katharine, Bois, Michael, Ostrov, Nili, Lee, Henry H., Laurent, Jon M., Mita, Paolo

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Nov 01. 118(44), 1-2.

Access URL: https://www.jstor.org/stable/27093571

Methodology and development of a machine learning probability calculator: Data heterogeneity limits ability to predict recurrence after arthroscopic Bankart repair.

Authors: van Spanning, Sanne H., Verweij, Lukas P. E., Hendrickx, Laurent A. M., Allaart, Laurens J. H., Athwal, George S., Lafosse, Thibault, Lafosse, Laurent, Doornberg, Job N., Oosterhoff, Jacobien H. F., van den Bekerom, Michel P. J., Buijze, Geert Alexander, Flinkillä, T., Nakagawa, S., Loppini, M., Waterman, B. R., Owens, B., Gotoh, M., Nakamura, H., Rossi, L. A., Pasqualini, I.

Source: Knee Surgery, Sports Traumatology, Arthroscopy; Apr2025, Vol. 33 Issue 4, p1488-1499, 12p

Subject Terms: CLINICAL decision support systems, MACHINE learning, DISEASE risk factors, ARTIFICIAL intelligence, SHOULDER dislocations, CONTACT sports

Motivational factors influencing the choice of oncology as a specialty among French medical students.

Authors: Penel, Nicolas, Cren, Pierre-Yves, Ducroq, Christophe, Laurent, Estelle M. N., Choukroun, Gabriel, Hazzan, Marc, Crie, Dominique

Source: BMC Medical Education; 3/27/2025, Vol. 25 Issue 1, p1-9, 9p

Subject Terms: MEDICAL students, ACADEMIC motivation, INTRINSIC motivation, MEDICAL specialties & specialists, COUNTRY life

Cancer cells impact the microrheology of endothelial cells during physical contact or through paracrine signalling.

Authors: Kefala, Georgia M., Tsvirkun, Daria, Laurent, Valérie M., Verdier, Claude

Source: Scientific Reports; 3/8/2025, Vol. 15 Issue 1, p1-12, 12p

Subject Terms: CANCER cells, RHEOLOGY, ENDOTHELIUM, VISCOELASTICITY, METASTASIS