Variable selection with FDR control for noisy data -- an application to screening metabolites that are associated with breast and colorectal cancer

Authors: Wang, Runqiu, Dai, Ran, Huang, Ying, Neuhouser, Marian L., Lampe, Johanna W., Raftery, Daniel, Tabung, Fred K., Zheng, Cheng

Subject Terms: Statistics - Methodology

Access URL: http://arxiv.org/abs/2310.06696

Biomarker-assessed total energy intake and its cohort study association with all-cause mortality in postmenopausal females

Authors: Prentice, Ross L, Aragaki, Aaron K, Zheng, Cheng, Manson, JoAnn E, Tinker, Lesley F, Ravelli, Michele N, Mossavar-Rahmani, Yasmin, Wallace, Robert B, Tooze, Janet A, Johnson, Karen C, Lampe, Johanna W, Neuhouser, Marian L, Schoeller, Dale A

Source: In The American Journal of Clinical Nutrition May 2024 119(5):1329-1337

Measuring diet by metabolomics: a 14-d controlled feeding study of weighed food intake

Authors: Playdon, Mary C., Tinker, Lesley F., Prentice, Ross L., Loftfield, Erikka, Hayden, Kathleen M., Van Horn, Linda, Sampson, Joshua N., Stolzenberg-Solomon, Rachael, Lampe, Johanna W., Neuhouser, Marian L., Moore, Steven C.

Source: In The American Journal of Clinical Nutrition February 2024 119(2):511-526

Modulating a prebiotic food source influences inflammation and immune-regulating gut microbes and metabolites: insights from the BE GONE trial

Authors: Zhang, Xiaotao, Irajizad, Ehsan, Hoffman, Kristi L., Fahrmann, Johannes F., Li, Fangyu, Seo, Yongwoo David, Browman, Gladys J., Dennison, Jennifer B., Vykoukal, Jody, Luna, Pamela N., Siu, Wesley, Wu, Ranran, Murage, Eunice, Ajami, Nadim J., McQuade, Jennifer L., Wargo, Jennifer A., Long, James P., Do, Kim-Anh, Lampe, Johanna W., Basen-Engquist, Karen M., Okhuysen, Pablo C., Kopetz, Scott, Hanash, Samir M., Petrosino, Joseph F., Scheet, Paul, Daniel, Carrie R.

Source: In eBioMedicine December 2023 98

Metabolomics Biomarkers for Fatty Acid Intake and Biomarker-Calibrated Fatty Acid Associations with Chronic Disease Risk in Postmenopausal Women

Authors: Prentice, Ross L, Vasan, Sowmya, Tinker, Lesley F, Neuhouser, Marian L, Navarro, Sandi L, Raftery, Daniel, Gowda, GA Nagana, Pettinger, Mary, Aragaki, Aaron K, Lampe, Johanna W, Huang, Ying, Van Horn, Linda, Manson, JoAnn E, Wallace, Robert B, Mossavar-Rahmani, Yasmin, Wactawski-Wende, Jean, Liu, Simin, Snetselaar, Linda, Howard, Barbara V, Chlebowski, Rowan T, Zheng, Cheng

Source: In The Journal of Nutrition September 2023 153(9):2663-2677

Metabolomics-Based Biomarker for Dietary Fat and Associations with Chronic Disease Risk in Postmenopausal Women

Authors: Prentice, Ross L., Vasan, Sowmya, Tinker, Lesley F., Neuhouser, Marian L., Navarro, Sandi L., Raftery, Daniel, Gowda, GA Nagana, Pettinger, Mary, Aragaki, Aaron K., Lampe, Johanna W., Huang, Ying, Van Horn, Linda, Manson, JoAnn E., Wallace, Robert, Mossavar-Rahmani, Yasmin, Wactawski-Wende, Jean, Liu, Simin, Snetselaar, Linda, Howard, Barbara V., Chlebowski, Rowan T., Zheng, Cheng

Source: In The Journal of Nutrition September 2023 153(9):2651-2662

Total energy expenditure as assessed by doubly labeled water and all-cause mortality in a cohort of postmenopausal women

Authors: Prentice, Ross L., Aragaki, Aaron K., Manson, JoAnn E., Schoeller, Dale A., Tinker, Lesley F., Mossavar-Rahmani, Yasmin, Wallace, Robert B., LaMonte, Michael J., Tooze, Janet A., Johnson, Karen C., Lampe, Johanna W., Neuhouser, Marian L.

Source: In The American Journal of Clinical Nutrition May 2023 117(5):955-963

Rationale and study protocol for a randomized controlled feeding study to determine the structural- and functional-level effects of diet-specific interventions on the gut microbiota of non-Hispanic black and white adults

Authors: Carson, Tiffany L., Buro, Acadia W., Miller, Darci, Peña, Alissa, Ard, Jamy D., Lampe, Johanna W., Yi, Nengjun, Lefkowitz, Elliot, William, Van Der Pol, Morrow, Casey, Wilson, Landon, Barnes, Stephen, Demark-Wahnefried, Wendy

Source: In Contemporary Clinical Trials December 2022 123

Associations of Biomarker-Calibrated Healthy Eating Index-2010 Scores with Chronic Disease Risk and Their Dependency on Energy Intake and Body Mass Index in Postmenopausal Women

Authors: Neuhouser, Marian L ^*, Pettinger, Mary, Tinker, Lesley F, Thomson, Cynthia, Van Horn, Linda, Haring, Bernhard, Shikany, James M, Stefanick, Marcia L, Prentice, Ross L, Manson, JoAnn E, Mossavar-Rahmani, Yasmin, Lampe, Johanna W

Source: In The Journal of Nutrition December 2022 152(12):2808-2817

Mortality Associated with Healthy Eating Index Components and an Empirical-Scores Healthy Eating Index in a Cohort of Postmenopausal Women

Authors: Prentice, Ross L ^*, Aragaki, Aaron K, Van Horn, Linda, Thomson, Cynthia A, Tinker, Lesley F, Manson, JoAnn E, Mossavar-Rahmani, Yasmin, Huang, Ying, Zheng, Cheng, Beresford, Shirley AA, Wallace, Robert, Anderson, Garnet L, Lampe, Johanna W, Neuhouser, Marian L

Source: In The Journal of Nutrition November 2022 152(11):2493-2504

Four-Day Food Record Macronutrient Intake, With and Without Biomarker Calibration, and Chronic Disease Risk in Postmenopausal Women

Authors: Prentice, Ross L, Pettinger, Mary, Neuhouser, Marian L, Raftery, Daniel, Zheng, Cheng, Gowda, G A Nagana, Huang, Ying, Tinker, Lesley F, Howard, Barbara V, Manson, JoAnn E, Wallace, Robert, Mossavar-Rahmani, Yasmin, Johnson, Karen C, Lampe, Johanna W

Source: American journal of epidemiology. 191(6):1061-1070

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100155017343.0x000001&indx=1&recIds=ETOCvdc_100155017343.0x000001

The Gut Microbiome Is Associated with Circulating Dietary Biomarkers of Fruit and Vegetable Intake in a Multiethnic Cohort

Authors: Frankenfeld, Cara L., Hullar, Meredith A.J., Maskarinec, Gertraud, Monroe, Kristine R., Shepherd, John A., Franke, Adrian A., Randolph, Timothy W., Wilkens, Lynne R., Boushey, Carol J., Le Marchand, Loïc, Lim, Unhee, Lampe, Johanna W.

Source: Journal of the Academy of Nutrition and Dietetics. 122(1):78-98

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100151144116.0x000001&indx=1&recIds=ETOCvdc_100151144116.0x000001

Perspective: Leveraging the Gut Microbiota to Predict Personalized Responses to Dietary, Prebiotic, and Probiotic Interventions

Authors: Gibbons, Sean M ^*, Gurry, Thomas, Lampe, Johanna W, Chakrabarti, Anirikh, Dam, Veerle, Everard, Amandine, Goas, Almudena, Gross, Gabriele, Kleerebezem, Michiel, Lane, Jonathan, Maukonen, Johanna, Penna, Ana Lucia Barretto, Pot, Bruno, Valdes, Ana M, Walton, Gemma, Weiss, Adrienne, Zanzer, Yoghatama Cindya, Venlet, Naomi V, Miani, Michela

Source: In Advances in Nutrition September 2022 13(5):1450-1461

Biomarker-Calibrated Red and Combined Red and Processed Meat Intakes with Chronic Disease Risk in a Cohort of Postmenopausal Women

Authors: Zheng, Cheng, Pettinger, Mary, Gowda, G A Nagana, Lampe, Johanna W, Raftery, Daniel, Tinker, Lesley F, Huang, Ying, Navarro, Sandi L, O'Brien, Diane M, Snetselaar, Linda, Liu, Simin, Wallace, Robert B, Neuhouser, Marian L, Prentice, Ross L ^*

Source: In The Journal of Nutrition July 2022 152(7):1711-1720

Associations of the Dietary Inflammatory Index with total adiposity and ectopic fat through the gut microbiota, LPS, and C-reactive protein in the Multiethnic Cohort–Adiposity Phenotype Study

Authors: Lozano, Chloe P ^*, Wilkens, Lynne R, Shvetsov, Yurii B, Maskarinec, Gertraud, Park, Song-Yi, Shepherd, John A, Boushey, Carol J, Hebert, James R, Wirth, Michael D, Ernst, Thomas, Randolph, Timothy, Lim, Unhee, Lampe, Johanna W, Le Marchand, Loïc, Hullar, Meredith AJ

Source: In The American Journal of Clinical Nutrition May 2022 115(5):1344-1356

Biomarkers for Components of Dietary Protein and Carbohydrate with Application to Chronic Disease Risk in Postmenopausal Women

Authors: Prentice, Ross L ^*, Pettinger, Mary, Zheng, Cheng, Neuhouser, Marian L, Raftery, Daniel, Gowda, G A Nagana, Huang, Ying, Tinker, Lesley F, Howard, Barbara V, Manson, JoAnn E, Van Horn, Linda, Wallace, Robert, Mossavar-Rahmani, Yasmin, Johnson, Karen C, Snetselaar, Linda, Lampe, Johanna W

Source: In The Journal of Nutrition April 2022 152(4):1107-1117

Recruitment and Retention of Healthy, Postmenopausal Women of African and European Ancestry: Results from a Dietary Intervention with Repeated Biospecimen Collections

Authors: McCann, Susan E ^*, Rodriguez, Elisa M, Erwin, Deborah, Yao, Song, Tritchler, David, Hullar, Meredith AJ, O’Connor, Tracey, Lampe, Johanna W

Source: In Current Developments in Nutrition March 2022 6(3)

Diet and Liver Adiposity in Older Adults: The Multiethnic Cohort Adiposity Phenotype Study

Authors: Kaenkumchorn, Tanyaporn K ^*, Merritt, Melissa A, Lim, Unhee, Le Marchand, Loïc, Boushey, Carol J, Shepherd, John A, Wilkens, Lynne R, Ernst, Thomas, Lampe, Johanna W

Source: In The Journal of Nutrition November 2021 151(11):3579-3587

Urinary enterolactone is associated with plasma proteins related to immunity and cancer development in healthy participants on controlled diets

Authors: Miles, Fayth L., Navarro, Sandi L., Garrison, Carly B., Randolph, Timothy W., Zhang, Yuzheng, Shojaie, Ali, Kratz, Mario, Hullar, Meredith A.J., Raftery, Daniel, Neuhouser, Marian L., Lampe, Paul D., Lampe, Johanna W.

Source: In Human Nutrition & Metabolism September 2021 25

Biomarker-Calibrated Macronutrient Intake and Chronic Disease Risk among Postmenopausal Women

Authors: Prentice, Ross L ^*, Pettinger, Mary, Neuhouser, Marian L, Raftery, Daniel, Zheng, Cheng, Gowda, G A Nagana, Huang, Ying, Tinker, Lesley F, Howard, Barbara V, Manson, JoAnn E, Wallace, Robert, Mossavar-Rahmani, Yasmin, Johnson, Karen C, Lampe, Johanna W

Source: In The Journal of Nutrition August 2021 151(8):2330-2341