Biologically-informed neural networks guide mechanistic modeling from sparse experimental data

Authors: Lagergren, John H., Nardini, John T., Baker, Ruth E., Simpson, Matthew J., Flores, Kevin B.

Subject Terms: Quantitative Biology - Quantitative Methods, Mathematics - Dynamical Systems

Access URL: http://arxiv.org/abs/2005.13073

Learning Equations from Biological Data with Limited Time Samples

Authors: Nardini, John T., Lagergren, John H., Hawkins-Daarud, Andrea, Curtin, Lee, Morris, Bethan, Rutter, Erica M., Swanson, Kristin R., Flores, Kevin B.

Subject Terms: Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2005.09622

Divide and conquer: using RhizoVision Explorer to aggregate data from multiple root scans using image concatenation and statistical methods.

Authors: Seethepalli, Anand, Ottley, Chanae, Childs, Joanne, Cope, Kevin R., Fine, Aubrey K., Lagergren, John H., Kalluri, Udaya, Iversen, Colleen M., York, Larry M.

Source: New Phytologist; Dec2024, Vol. 244 Issue 5, p2101-2108, 8p

Subject Terms: SOIL productivity, AGRICULTURE, IMAGE analysis, PLANT productivity, FREEWARE (Computer software)

A Convolutional Neural Network Method for Boundary Optimization Enables Few-Shot Learning for Biomedical Image Segmentation
MICCAI workshop on domain adaptation and representation transfer

Authors: Rutter, Erica M., Lagergren, John H., Flores, Kevin B.

Source: Lecture notes in computer science. 11795:190-198

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN605607224&indx=1&recIds=ETOCCN605607224

Learning partial differential equations for biological transport models from noisy spatio-temporal data

Authors: Lagergren, John H., Nardini, John T., Lavigne, G. Michael, Rutter, Erica M., Flores, Kevin B.

Source: Proceedings: Mathematical, Physical and Engineering Sciences, 2020 Feb 01. 476(2234), 1-21.

Access URL: https://www.jstor.org/stable/26917952

Automated Object Tracing for Biomedical Image Segmentation Using a Deep Convolutional Neural Network
Medical image computing and computer assisted intervention (International conference)

Authors: Rutter, Erica M., Lagergren, John H., Flores, Kevin B.

Source: Lecture notes in computer science. 11073:686-694

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN604293612&indx=1&recIds=ETOCCN604293612

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