Community recommendations on cryoEM data archiving and validation

Authors: Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R. Baldwin, John M. Berrisford, Gérard Bricogne, Preeti Choudhary, Tristan I. Croll, Radostin Danev, Sai J. Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J. Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman Salih, Sjors H. W. Scheres, Gunnar F. Schroeder, Carlos Oscar S. Sorzano, Scott M. Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar

Source: IUCrJ, Vol 11, Iss 2, Pp 140-151 (2024)

Subject Terms: cryogenic-specimen electron microscopy, data archiving, validation, quality control, electron microscopy data bank, protein data bank, single-particle cryoem, databases, bioinformatics, structure determination, Crystallography, QD901-999

File Description: electronic resource

Relation: http://scripts.iucr.org/cgi-bin/paper?S2052252524001246; https://doaj.org/toc/2052-2525

Access URL: https://doaj.org/article/0e43f020fe4a4894b6f5aa6a5fd3dc2f

The structure of the core NuRD repression complex provides insights into its interaction with chromatin

Authors: Christopher J Millard, Niranjan Varma, Almutasem Saleh, Kyle Morris, Peter J Watson, Andrew R Bottrill, Louise Fairall, Corinne J Smith, John WR Schwabe

Source: eLife, Vol 5 (2016)

Subject Terms: transcription regulation, histone deacetylase, repression complex, chromatin, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/13941; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/4ec4f0e5e4d146ce9e4fdf503a7b8149

Cryo-Electron Tomography Remote Data Collection and Subtomogram Averaging

Authors: Yuewen Sheng, author¹, Kyle Morris, author¹, Julika Radecke, author¹, Peijun Zhang, author^{1, 2, 3}

Source: Journal of Visualized Experiments. (185)

Availability: http://www.jove.com/video/63923

Transparent reporting items for simulation studies evaluating statistical methods: Foundations for reproducibility and reliability

Authors: Coralie Williams, Yefeng Yang, Malgorzata Lagisz, Kyle Morrison, Lorenzo Ricolfi, David I. Warton, Shinichi Nakagawa

Source: Methods in Ecology and Evolution, Vol 15, Iss 11, Pp 1926-1939 (2024)

Subject Terms: meta‐research, Monte Carlo simulation, replicability, reporting checklist, reporting quality, reproducibility, Ecology, QH540-549.5, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2041-210X

Access URL: https://doaj.org/article/b40427ef995b4d9ba023e06e587204e5

Method Reporting with Initials for Transparency (MeRIT) promotes more granularity and accountability for author contributions

Authors: Shinichi Nakagawa, Edward R. Ivimey-Cook, Matthew J. Grainger, Rose E. O’Dea, Samantha Burke, Szymon M. Drobniak, Elliot Gould, Erin L. Macartney, April Robin Martinig, Kyle Morrison, Matthieu Paquet, Joel L. Pick, Patrice Pottier, Lorenzo Ricolfi, David P. Wilkinson, Aaron Willcox, Coralie Williams, Laura A. B. Wilson, Saras M. Windecker, Yefeng Yang, Malgorzata Lagisz

Source: Nature Communications, Vol 14, Iss 1, Pp 1-5 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/ccaef5860ea54a3b97ab70c62404704e

Cardinal and Ordinal Aspects of Finger-Counting Habits Predict Different Individual Differences in Embodied Numerosity

Authors: Kyle Morrissey, Darcy Hallett

Source: Journal of Numerical Cognition, Vol 4, Iss 3, Pp 613-635 (2018)

Subject Terms: magnitude comparison, finger counting, representational effects, embodied cognition, SNARC, order effects, Psychology, BF1-990, Mathematics, QA1-939

File Description: electronic resource

Relation: http://jnc.psychopen.eu/article/view/138; https://doaj.org/toc/2363-8761

Access URL: https://doaj.org/article/5fba5803333b449ea56c2103e96e9b3b

From natural to designer self-assembling biopolymers, the structural characterisation of fibrous proteins & peptides using fibre diffraction.

Authors: Kyle Morris¹, Louise Serpell¹

Source: Chemical Society Reviews. Sep2010, Vol. 39 Issue 9, p3445-3453. 9p.

Subject Terms: *MOLECULAR self-assembly, *BIOPOLYMERS, *PEPTIDES, *NANOSTRUCTURED materials, *CYTOSKELETAL proteins, *X-ray diffraction, *PROTEIN structure

Energy transfer in self-assembled dipeptide hydrogelsElectronic supplementary information (ESI) available: Full synthetic and experimental details. See DOI: 10.1039/c003052j.

Authors: Lin Chen, Steven Revel, Kyle Morris, Dave J. Adams

Source: Chemical Communications; 6/28/2010, Vol. 46 Issue 24, p4267-4269, 3p

Subject Terms: ENERGY transfer, MOLECULAR self-assembly, PEPTIDES, HYDROGELS, NAPHTHALENE, HYDROGEN-ion concentration