Dimensionality Reduction of Longitudinal 'Omics Data using Modern Tensor Factorization

Authors: Mor, Uria, Cohen, Yotam, Valdes-Mas, Rafael, Kviatcovsky, Denise, Elinav, Eran, Avron, Haim

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Computational Engineering, Finance, and Science, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2111.14159

Impact of caloric restriction on the gut microbiota

Authors: Kern, Lara, Kviatcovsky, Denise, He, Yiming, Elinav, Eran

Source: In Current Opinion in Microbiology June 2023 73

Microbiome-phage interactions in inflammatory bowel disease

Authors: Federici, Sara, Kviatcovsky, Denise, Valdés-Mas, Rafael, Elinav, Eran

Source: In Clinical Microbiology and Infection June 2023 29(6):682-688

Targeted suppression of human IBD-associated gut microbiota commensals by phage consortia for treatment of intestinal inflammation

Authors: Federici, Sara, Kredo-Russo, Sharon, Valdés-Mas, Rafael, Kviatcovsky, Denise, Weinstock, Eyal, Matiuhin, Yulia, Silberberg, Yael, Atarashi, Koji, Furuichi, Munehiro, Oka, Akihiko, Liu, Bo, Fibelman, Morine, Weiner, Iddo Nadav, Khabra, Efrat, Cullin, Nyssa, Ben-Yishai, Noa, Inbar, Dana, Ben-David, Hava, Nicenboim, Julian, Kowalsman, Noga, Lieb, Wolfgang, Kario, Edith, Cohen, Tal, Geffen, Yael Friedman, Zelcbuch, Lior, Cohen, Ariel, Rappo, Urania, Gahali-Sass, Inbar, Golembo, Myriam, Lev, Vered, Dori-Bachash, Mally, Shapiro, Hagit, Moresi, Claudia, Cuevas-Sierra, Amanda, Mohapatra, Gayatree, Kern, Lara, Zheng, Danping, Nobs, Samuel Philip, Suez, Jotham, Stettner, Noa, Harmelin, Alon, Zak, Naomi, Puttagunta, Sailaja, Bassan, Merav, Honda, Kenya, Sokol, Harry, Bang, Corinna, Franke, Andre, Schramm, Christoph, Maharshak, Nitsan, Sartor, Ryan Balfour, Sorek, Rotem, Elinav, Eran

Source: In Cell 4 August 2022 185(16):2879-2898

Targeting the immune system towards novel therapeutic avenues to fight brain aging and neurodegeneration

Authors: Peralta Ramos, Javier María, Kviatcovsky, Denise, Schwartz, Michal

Source: European journal of neuroscience. 56(9):5413-5427

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165617388.0x000001&indx=1&recIds=ETOCvdc_100165617388.0x000001

Gut microbiome and its potential link to personalized nutrition

Authors: Kviatcovsky, Denise, Zheng, Danping, Elinav, Eran

Source: In Current Opinion in Physiology August 2021 22

Amyotrophic lateral sclerosis and intestinal microbiota—toward establishing cause and effect

Authors: Gotkine, Marc, Kviatcovsky, Denise, Elinav, Eran

Source: Gut microbes. 11(6):1833-1841

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100110839001.0x000001&indx=1&recIds=ETOCvdc_100110839001.0x000001

Tuberculosis Exacerbates HIV-1 Infection through IL-10/STAT3-Dependent Tunneling Nanotube Formation in Macrophages

Authors: Souriant, Shanti, Balboa, Luciana, Dupont, Maeva, Pingris, Karine, Kviatcovsky, Denise, Cougoule, Céline, Lastrucci, Claire, Bah, Aicha, Gasser, Romain, Poincloux, Renaud, Raynaud-Messina, Brigitte, Al Saati, Talal, Inwentarz, Sandra, Poggi, Susana, Moraña, Eduardo Jose, González-Montaner, Pablo, Corti, Marcelo, Lagane, Bernard, Vergne, Isabelle, Allers, Carolina, Kaushal, Deepak, Kuroda, Marcelo J., Sasiain, Maria del Carmen, Neyrolles, Olivier, Maridonneau-Parini, Isabelle, Lugo-Villarino, Geanncarlo, Vérollet, Christel

Source: In Cell Reports 26 March 2019 26(13):3586-3599

Role of neutrophils in CVB3 infection and viral myocarditis

Authors: Rivadeneyra, Leonardo, Charó, Nancy, Kviatcovsky, Denise, de la Barrera, Silvia, Gómez, Ricardo Martín, Schattner, Mirta

Source: In Journal of Molecular and Cellular Cardiology December 2018 125:149-161

A microbial workout

Authors: Kviatcovsky, Denise, Elinav, Eran

Source: Cell host & microbe. 31(2):159-160

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184931287.0x000001&indx=1&recIds=ETOCvdc_100184931287.0x000001

Monocyte-derived dendritic cells early exposed to Mycobacterium tuberculosis induce an enhanced T helper 17 response and transfer mycobacterial antigens

Authors: Balboa, Luciana, Kviatcovsky, Denise, Schierloh, Pablo, García, Marina, de la Barrera, Silvia, Sasiain, María del Carmen

Source: In International Journal of Medical Microbiology November 2016 306(7):541-553

CYP46A1‐APOE axis at the choroid plexus is compromised in Alzheimer's disease but is amenable to rescue

Authors: Tsitsou, Afroditi, Suzzi, Stefano, Kenigsbuch, Mor, Singer, Oded, Strobelt, Romano, Colaiuta, Sara P, Cahalon, Liora, Arad, Michal, Medina, Sedi, Kviatcovsky, Denise, Schwartz, Michal

Source: Alzheimer's & dementia. 17(3)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100139016922.0x000001&indx=1&recIds=ETOCvdc_100139016922.0x000001

Lung dendritic-cell metabolism underlies susceptibility to viral infection in diabetes.

Authors: Nobs, Samuel Philip, Kolodziejczyk, Aleksandra A., Adler, Lital, Horesh, Nir, Botscharnikow, Christine, Herzog, Ella, Mohapatra, Gayatree, Hejndorf, Sophia, Hodgetts, Ryan-James, Spivak, Igor, Schorr, Lena, Fluhr, Leviel, Kviatcovsky, Denise, Zacharia, Anish, Njuki, Suzanne, Barasch, Dinorah, Stettner, Noa, Dori-Bachash, Mally, Harmelin, Alon, Brandis, Alexander

Source: Nature; Dec2023, Vol. 624 Issue 7992, p645-652, 8p

Mycobacterium tuberculosis Multidrug-Resistant Strain M Induces Low IL-8 and Inhibits TNF-α Secretion by Bronchial Epithelial Cells Altering Neutrophil Effector Functions.

Authors: Kviatcovsky, Denise¹, Rivadeneyra, Leonardo¹, Balboa, Luciana¹, Yokobori, Noemí¹, López, Beatriz², Ritacco, Viviana², Schattner, Mirta¹, Sasiain, María del Carmen¹, de la Barrera, Silvia¹

Source: Mediators of Inflammation. 8/9/2017, p1-13. 13p.

Subject Terms: *MYCOBACTERIOSIS, *EPITHELIAL cells, *TUBERCULOSIS, *MYCOBACTERIUM tuberculosis, *PHYSIOLOGY

Dimensionality reduction of longitudinal 'omics data using modern tensor factorizations.

Authors: Mor, Uria, Cohen, Yotam, Valdés-Mas, Rafael, Kviatcovsky, Denise, Elinav, Eran, Avron, Haim

Source: PLoS Computational Biology; 7/15/2022, Vol. 18 Issue 7, p1-18, 18p, 4 Diagrams, 4 Graphs

Subject Terms: BIG data, MULTIVARIATE analysis, FACTORIZATION, CALCULUS of tensors, ENGINEERING standards, STATISTICS

Gut microbiota modulates weight gain in mice after discontinued smoke exposure.

Authors: Fluhr, Leviel, Mor, Uria, Kolodziejczyk, Aleksandra A., Dori-Bachash, Mally, Leshem, Avner, Itav, Shlomik, Cohen, Yotam, Suez, Jotham, Zmora, Niv, Moresi, Claudia, Molina, Shahar, Ayalon, Niv, Valdés-Mas, Rafael, Hornstein, Shanni, Karbi, Hodaya, Kviatcovsky, Denise, Livne, Adi, Bukimer, Aurelie, Eliyahu-Miller, Shimrit, Metz, Alona

Source: Nature; 12/23/2021, Vol. 600 Issue 7890, p713-719, 7p

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Phage therapy in noncommunicable diseases.

Authors: Kviatcovsky, Denise¹, Valdés-Mas, Rafael¹, Federici, Sara¹, Elinav, Eran^1,2 eran.elinav@weizmann.ac.il

Source: Science. 10/20/2023, Vol. 382 Issue 6668, p266-267. 2p. 1 Diagram.

Subject Terms: *NON-communicable diseases, *BACTERIOPHAGES, *EMERGING infectious diseases

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Potential roles of gut microbiome and metabolites in modulating ALS in mice.

Authors: Blacher, Eran, Bashiardes, Stavros, Shapiro, Hagit, Rothschild, Daphna, Mor, Uria, Dori-Bachash, Mally, Kleimeyer, Christian, Moresi, Claudia, Harnik, Yotam, Zur, Maya, Zabari, Michal, Brik, Rotem Ben-Zeev, Kviatcovsky, Denise, Zmora, Niv, Cohen, Yotam, Bar, Noam, Levi, Izhak, Amar, Nira, Mehlman, Tevie, Brandis, Alexander

Source: Nature; 8/22/2019, Vol. 572 Issue 7770, p474-480, 7p, 18 Graphs