Metabolomic and Lipidomic Signature of Skeletal Muscle with Constitutively Active Mechanistic Target of Rapamycin Complex 1

Authors: Maroto, Rosario, Graber, Ted G, Romsdahl, Trevor B, Kudlicki, Andrzej, Russell, William K, Rasmussen, Blake B

Source: In The Journal of Nutrition December 2023 153(12):3397-3405

Coevolution combined with molecular dynamics simulations provides structural and mechanistic insights into the interactions between the integrator complex subunits

Authors: Fongang, Bernard, Wadop, Yannick N., Zhu, Yingjie, Wagner, Eric J., Kudlicki, Andrzej, Rowicka, Maga

Source: In Computational and Structural Biotechnology Journal 2023 21:5686-5697

Strength of association between body mass index and physical function scores in paediatric burn patients: A National Institute on Disability, Independent Living, and Rehabilitation Research Burn Model System study

Authors: Rontoyanni, Victoria G., Kudlicki, Andrzej, Palackic, Alen, Gibran, Nicole, Stewart, Barclay, Schneider, Jeffrey C., Ryan, Colleen M., Murton, Andrew J., Wolf, Steven E., Kowalske, Karen, Suman, Oscar E.

Source: Burns. 48(4):824-832

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100166135647.0x000001&indx=1&recIds=ETOCvdc_100166135647.0x000001

Coevolution of Residues Provides Evidence of a Functional Heterodimer of 5-HT2AR and 5-HT2CR Involving Both Intracellular and Extracellular Domains

Authors: Fongang, Bernard, Cunningham, Kathryn A., Rowicka, Maga, Kudlicki, Andrzej

Source: In Neuroscience 1 August 2019 412:48-59

The NFκB subunit RELA is a master transcriptional regulator of the committed epithelial-mesenchymal transition in airway epithelial cells

Authors: Tian, Bing, Widen, Steven G., Yang, Jun, Wood, Thomas G., Kudlicki, Andrzej, Zhao, Yingxin, Brasier, Allan R. ^**

Source: In Journal of Biological Chemistry 19 October 2018 293(42):16528-16545

Gaussianity of Cosmic Velocity Fields and Linearity of the Velocity-Gravity Relation

Authors: Ciecielag, Pawel, Chodorowski, Michal, Kiraga, Marcin, Strauss, Michael, Kudlicki, Andrzej, Bouchet, François

Source: Mon.Not.Roy.Astron.Soc.339:641,2003

Subject Terms: Astrophysics

Access URL: http://arxiv.org/abs/astro-ph/0010364

Logic of the Yeast Metabolic Cycle: Temporal Compartmentalization of Cellular Processes

Authors: Tu, Benjamin P., Kudlicki, Andrzej, Rowicka, Maga, McKnight, Steven L.

Source: Science, 2005 Nov . 310(5751), 1152-1158.

Access URL: https://www.jstor.org/stable/3843059

Reconstructing Cosmic Peculiar Velocities from the Mildly Nonlinear Density Field

Authors: Kudlicki, Andrzej, Chodorowski, Michal, Plewa, Tomasz, Różyczka, Michal

Source: Mon.Not.Roy.Astron.Soc. 316 (2000) 464

Subject Terms: Astrophysics

Access URL: http://arxiv.org/abs/astro-ph/9910018

Respiratory Syncytial Virus Infection Changes Cargo Composition of Exosome Released from Airway Epithelial Cells

Authors: Chahar, Harendra, Corsello, Tiziana, Kudlicki, Andrzej, Komaravelli, Narayana, Casola, Antonella

Source: Scientific reports. 8(1):1-18

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100103848238.0x000001&indx=1&recIds=ETOCvdc_100103848238.0x000001

Predicting proteome dynamics using gene expression data

Authors: Kuchta, Krzysztof, Towpik, Joanna, Biernacka, Anna, Kutner, Jan, Kudlicki, Andrzej, Ginalski, Krzysztof, Rowicka, Maga

Source: Scientific reports. 8(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182723921.0x000001&indx=1&recIds=ETOCvdc_100182723921.0x000001

Systematic Determination of Human Cyclin Dependent Kinase (CDK)-9 Interactome Identifies Novel Functions in RNA Splicing Mediated by the DEAD Box (DDX)-5/17 RNA Helicases*

Authors: Yang, Jun ^{‡, §, ¶}, Zhao, Yingxin ^{‡, §, ¶}, Kalita, Mridul ^{§, ¶}, Li, Xueling ^{¶, ‖}, Jamaluddin, Mohammad ^{‡, ¶}, Tian, Bing ^{‡, §, ¶}, Edeh, Chukwudi B. ^‡, Wiktorowicz, John E. ^{§, ¶, ‖}, Kudlicki, Andrzej ^{§, ¶, ‖}, Brasier, Allan R. ^{‡, §, ¶, **}

Source: In Molecular & Cellular Proteomics October 2015 14(10):2701-2721

Modulation of Gene Expression Regulated by the Transcription Factor NF-κB/RelA

Authors: Li, Xueling, Zhao, Yingxin ^**, Tian, Bing, Jamaluddin, Mohammad, Mitra, Abhishek, Yang, Jun, Rowicka, Maga, Brasier, Allan R. ^**, Kudlicki, Andrzej

Source: In Journal of Biological Chemistry 25 April 2014 289(17):11927-11944

Diverse Clinical Manifestations and Challenges of Mucormycosis: Insights From Serial Cases.

Authors: Nielsen, Marisa C, Cerqueira, Filipe M, Kavuri, Sri Bharathi, Raymond, Caitlin M, Muneeb, Aeman, Kudlicki, Andrzej S, Tariq, Shafaq, Liu, Mingru, Routh, Andrew L, Qiu, Suimin, Ren, Ping

Source: Open Forum Infectious Diseases; Nov2023, Vol. 10 Issue 11, p1-9, 9p

Subject Terms: MUCORMYCOSIS, SYMPTOMS, FUNGAL growth, MYCOSES, MEDICAL personnel, MICROBIOLOGY

Geographic Terms: GALVESTON (Tex.)

Why a Constant Number of Vertebrae? Digital Control of Segmental Identity during Vertebrate Development

Authors: Kudlicki, Andrzej

Source: BioEssays. 42(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100095972474.0x000001&indx=1&recIds=ETOCvdc_100095972474.0x000001

Maximum parsimony interpretation of chromatin capture experiments.

Authors: Homouz, Dirar^1,2,3 (AUTHOR) a.kudlicki@utmb.edu, Kudlicki, Andrzej S.^4,5 (AUTHOR) a.kudlicki@utmb.edu

Source: PLoS ONE. 11/25/2019, Vol. 14 Issue 11, p1-14. 14p.

Subject Terms: *PARSIMONIOUS models, *CELL populations, *PHYSICAL contact

High-Resolution Timing of Cell Cycle-Regulated Gene Expression

Authors: Rowicka, Maga, Kudlicki, Andrzej, Tu, Benjamin P., Otwinowski, Zbyszek

Source: Proceedings of the National Academy of Sciences of the United States of America, 2007 Oct . 104(43), 16892-16897.

Access URL: https://www.jstor.org/stable/25450153

Inferring Gene Regulatory Networks from RNA-seq Data Using Kernel Classification.

Authors: Al-Aamri, Amira¹ (AUTHOR), Kudlicki, Andrzej S.² (AUTHOR), Maalouf, Maher³ (AUTHOR), Taha, Kamal⁴ (AUTHOR), Homouz, Dirar¹ (AUTHOR) dirar.homouz@ku.ac.ae

Source: Biology (2079-7737). Apr2023, Vol. 12 Issue 4, p518. 14p.

Subject Terms: *GENE regulatory networks, *GENE expression profiling, *RNA sequencing, *REGULATOR genes, *GENE targeting, *SACCHAROMYCES cerevisiae

I-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks

Authors: Biernacka, Anna, Zhu, Yingjie, Skrzypczak, Magdalena, Forey, Romain, Pardo, Benjamin, Grzelak, Marta, Nde, Jules, Mitra, Abhishek, Kudlicki, Andrzej, Crosetto, Nicola, Pasero, Philippe, Rowicka, Maga, Ginalski, Krzysztof

Source: Communications biology. 1(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100130045085.0x000001&indx=1&recIds=ETOCvdc_100130045085.0x000001

WHY IS DATA HARMONIZATION DIFFICULT? TOWARDS A TAXONOMY FOR STRUCTURING THE MAPPING OF VARIABLES BETWEEN DATA MODELS
American Medical Informatics Association annual symposium, AMIA

Authors: Sommerhalder, Christian, Capek, Karel, Liang, Xuyang, Kudlicki, Andrzej, Finnerty, Celeste C., Bhavnani, Suresh K.

Source: AMIA annual symposium. 3:1769-1769

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606296209&indx=1&recIds=ETOCCN606296209

Comparison between Timelines of Transcriptional Regulation in Mammals, Birds, and Teleost Fish Somitogenesis.

Authors: Fongang, Bernard¹, Kudlicki, Andrzej¹ askudlic@utmb.edu

Source: PLoS ONE. 5/18/2016, Vol. 11 Issue 5, p1-26. 26p.

Subject Terms: *COMPARATIVE genomics, *SOMITOGENESIS, *GENE expression, *EMBRYOLOGY, *GENETIC transcription regulation, *METAMERISM, *IMAGE segmentation