Modernization of the basic gravimetric control network Polish Geological Institute – implementing a modern international gravimetric system and relationship with the historical Potsdam system

Authors: Olszak Tomasz, Rosowiecka Olga, Musiatewicz Miroslaw, Targosz Pawel, Kulpinski Marek, Krupa Pawel, Stefanski Marcin

Source: Reports on Geodesy and Geoinformatics, Vol 117, Iss 1, Pp 1-10 (2024)

Subject Terms: gravity, gravimetric network, gravimetric frame, potsdam gravity system, Geodesy, QB275-343

File Description: electronic resource

Relation: https://doaj.org/toc/2391-8152

Access URL: https://doaj.org/article/2ac7e95c2f9f46faa3e0ad2d36fafcfd

Why does the herpes simplex 1 virus-encoded UL49.5 protein fail to inhibit the TAP-dependent antigen presentation?

Authors: Karska, Natalia, Zhukov, Igor, Lipińska, Andrea D., Rodziewicz-Motowidło, Sylwia, Krupa, Paweł

Source: In BBA - Biomembranes December 2023 1865(8)

Unusual Robustness of Neurotransmitter Vesicle Membranes against Serotonin-Induced Perturbations

Authors: Gupta, Ankur, Krupa, Pawel, Engberg, Oskar, Krupa, Magdalena, Chaudhary, Ankur, Li, Mai Suan, Huster, Daniel, Maiti, Sudipta

Source: Journal of physical chemistry.B. 127(9):1947-1955

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631919349&indx=1&recIds=ETOCRN631919349

The N-terminal Proline Hinge Motif Controls the Structure of Bovine Herpesvirus 1-encoded Inhibitor of the Transporter Associated with Antigen Processing Required for its Immunomodulatory Function

Authors: Graul, Małgorzata, Karska, Natalia, Wąchalska, Magda, Krupa, Paweł, Ślusarz, Magdalena J., Lubocki, Marcin, Bieńkowska-Szewczyk, Krystyna, Rodziewicz-Motowidło, Sylwia, Sieradzan, Adam K., Lipińska, Andrea D.

Source: In Journal of Molecular Biology 1 March 2023 435(5)

Molecules in the Serotonin-Melatonin Synthesis Pathway Have Distinct Interactions with Lipid Membranes.

Authors: Engberg, Oskar, Saha Roy, Debsankar, Krupa, Pawel, Banerjee, Shankha, Chaudhary, Ankur, Smith, Albert A., Li, Mai Suan, Maiti, Sudipta, Huster, Daniel

Source: Journal of Physical Chemistry B; 3/13/2025, Vol. 128 Issue 10, p2687-2700, 14p

Computational Models for the Study of Protein Aggregation

Authors: Co, Nguyen Truong, Li, Mai Suan, Krupa, Pawel

Source: Methods in molecular biology. 2340:51-78

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN628787517&indx=1&recIds=ETOCRN628787517

Method to share information between proximal mobile devices

Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment

Authors: Antoniak, Anna, Biskupek, Iga, Bojarski, Krzysztof K., Czaplewski, Cezary, Giełdoń, Artur, Kogut, Mateusz, Kogut, Małgorzata M., Krupa, Paweł, Lipska, Agnieszka G., Liwo, Adam, Lubecka, Emilia A., Marcisz, Mateusz, Maszota-Zieleniak, Martyna, Samsonov, Sergey A., Sieradzan, Adam K., Ślusarz, Magdalena J., Ślusarz, Rafał, Wesołowski, Patryk A., Ziȩba, Karolina

Source: In Journal of Molecular Graphics and Modelling November 2021 108

Prediction of CD28-CD86 protein complex structure using different level of resolution approach

Authors: Krupa, Paweł, Spodzieja, Marta, Sieradzan, Adam K.

Source: In Journal of Molecular Graphics and Modelling March 2021 103

Plant isoquinoline alkaloids as potential neurodrugs: A comparative study of the effects of benzo[c]phenanthridine and berberine-based compounds on β-amyloid aggregation

Authors: Marasco, Daniela, Vicidomini, Caterina, Krupa, Pawel, Cioffi, Federica, Huy, Pham Dinh Quoc, Li, Mai Suan, Florio, Daniele, Broersen, Kerensa, De Pandis, Maria Francesca, Roviello, Giovanni N.

Source: In Chemico-Biological Interactions 25 January 2021 334

Amyloid- β Tetramers and Divalent Cations at the Membrane/Water Interface: Simple Models Support a Functional Role.

Authors: Krupa, Pawel¹ (AUTHOR) pkrupa@ifpan.edu.pl, La Penna, Giovanni^2,3 (AUTHOR) giovanni.lapenna@cnr.it, Li, Mai Suan^1,4 (AUTHOR) masli@ifpan.edu.pl

Source: International Journal of Molecular Sciences. Aug2023, Vol. 24 Issue 16, p12698. 25p.

Subject Terms: *CATIONS, *AMYLOID, *NEUROPLASTICITY, *MEMBRANE lipids, *COPPER, *ION pairs

Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment

Authors: Lubecka, Emilia A., Karczyńska, Agnieszka S., Lipska, Agnieszka G., Sieradzan, Adam K., Ziȩba, Karolina, Sikorska, Celina, Uciechowska, Urszula, Samsonov, Sergey A., Krupa, Paweł, Mozolewska, Magdalena A., Golon, Łukasz, Giełdoń, Artur, Czaplewski, Cezary, Ślusarz, Rafał, Ślusarz, Magdalena, Crivelli, Silvia N., Liwo, Adam

Source: In Journal of Molecular Graphics and Modelling November 2019 92:154-166

Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets

Authors: Karczyńska, Agnieszka, Mozolewska, Magdalena A., Krupa, Paweł, Giełdoń, Artur, Bojarski, Krzysztof K., Zaborowski, Bartłomiej, Liwo, Adam, Ślusarz, Rafał, Ślusarz, Magdalena, Lee, Jooyoung, Joo, Keehyoung, Czaplewski, Cezary

Source: In Journal of Molecular Graphics and Modelling August 2018 83:92-99

Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction.

Authors: Ciura, Piotr, Smardz, Pamela, Spodzieja, Marta, Sieradzan, Adam K., Krupa, Pawel

Source: Journal of Physical Chemistry B; 7/18/2024, Vol. 128 Issue 28, p6770-6785, 16p

A Practical Guide to All-Atom and Coarse-Grained Molecular Dynamics Simulations Using Amber and Gromacs: A Case Study of Disulfide-Bond Impact on the Intrinsically Disordered Amyloid Beta.

Authors: Smardz, Pamela, Anila, Midhun Mohan, Rogowski, Paweł, Li, Mai Suan, Różycki, Bartosz, Krupa, Pawel

Source: International Journal of Molecular Sciences; Jun2024, Vol. 25 Issue 12, p6698, 46p

Subject Terms: MOLECULAR dynamics, AMYLOID, CHEMICAL shift (Nuclear magnetic resonance), BIOMACROMOLECULES

Serotonin Promotes Vesicular Association and Fusion by Modifying Lipid Bilayers.

Authors: Saha Roy, Debsankar, Gupta, Ankur, Vishvakarma, Vicky, Krupa, Pawel, Li, Mai Suan, Maiti, Sudipta

Source: Journal of Physical Chemistry B; 5/23/2024, Vol. 128 Issue 20, p4975-4985, 11p

Integrating Explicit and Implicit Fullerene Models into UNRES Force Field for Protein Interaction Studies.

Authors: Rogoża, Natalia H., Krupa, Magdalena A., Krupa, Pawel, Sieradzan, Adam K.

Source: Molecules; May2024, Vol. 29 Issue 9, p1919, 27p

Subject Terms: PROTEIN-protein interactions, LYSOZYMES, CARRIER proteins, MOLECULAR dynamics, PROTEIN stability, BINDING sites

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Authors: Keasar, Chen, McGuffin, Liam, Wallner, Björn, Chopra, Gaurav, Adhikari, Badri, Bhattacharya, Debswapna, Blake, Lauren, Bortot, Leandro, Cao, Renzhi, Dhanasekaran, B., Dimas, Itzhel, Faccioli, Rodrigo, Faraggi, Eshel, Ganzynkowicz, Robert, Ghosh, Sambit, Ghosh, Soma, Giełdoń, Artur, Golon, Lukasz, He, Yi, Heo, Lim, Hou, Jie, Khan, Main, Khatib, Firas, Khoury, George, Kieslich, Chris, Kim, David, Krupa, Pawel, Lee, Gyu, Li, Hongbo, Li, Jilong, Lipska, Agnieszka, Liwo, Adam, Maghrabi, Ali, Mirdita, Milot, Mirzaei, Shokoufeh, Mozolewska, Magdalena, Onel, Melis, Ovchinnikov, Sergey, Shah, Anand, Shah, Utkarsh, Sidi, Tomer, Sieradzan, Adam, Ślusarz, Magdalena, Ślusarz, Rafal, Smadbeck, James, Tamamis, Phanourios, Trieber, Nicholas, Wirecki, Tomasz, Yin, Yanping, Zhang, Yang, Bacardit, Jaume, Baranowski, Maciej, Chapman, Nicholas, Cooper, Seth, Defelicibus, Alexandre, Flatten, Jeff, Koepnick, Brian, Popović, Zoran, Zaborowski, Bartlomiej, Baker, David, Cheng, Jianlin, Czaplewski, Cezary, Delbem, Alexandre, Floudas, Christodoulos, Kloczkowski, Andrzej, Ołdziej, Stanislaw, Levitt, Michael, Scheraga, Harold, Seok, Chaok, Söding, Johannes, Vishveshwara, Saraswathi, Xu, Dong, Crivelli, Silvia

Source: Scientific reports. 8(1):1-18

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171419471.0x000001&indx=1&recIds=ETOCvdc_100171419471.0x000001

Preventing fibril formation of a protein by selective mutation

Authors: Maisuradze, Gia G., Medina, Jordi, Kachlishvili, Khatuna, Krupa, Pawel, Mozolewska, Magdalena A., Martin-Malpartida, Pau, Maisuradze, Luka, Macias, Maria J., Scheraga, Harold A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2015 Nov 01. 112(44), 13549-13554.

Access URL: https://www.jstor.org/stable/26465651

Changes in parasympathetic system in medulla oblongata in male pigs in the course of tachycardia-induced cardiomyopathy

Authors: Tomaszek, Alicja, Kiczak, Liliana, Bania, Jacek, Krupa, Paweł, Pasławska, Urszula, Zacharski, Maciej, Janiszewski, Adrian, Stefaniak, Tadeusz, Zyśko, Dorota, Ardehali, Hossein, Jankowska, Ewa A., Ponikowski, Piotr

Source: In Autonomic Neuroscience: Basic and Clinical October 2013 177(2):253-259