Modular Oxidation of Cytosine Modifications and Their Application in Direct and Quantitative Sequencing of 5-Hydroxymethylcytosine

Authors: Xu, Haiqi, Chen, Jinfeng, Cheng, Jingfei, Kong, Linzhen, Chen, Xiufei, Inoue, Masato, Liu, Yibin, Kriaucionis, Skirmantas, Zhao, Meiping, Song, Chun-Xiao

Source: Journal of the American Chemical Society. 145(13):7095-7100

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632401965&indx=1&recIds=ETOCRN632401965

Neuronal non-CG methylation is an essential target for MeCP2 function

Authors: Tillotson, Rebekah, Cholewa-Waclaw, Justyna, Chhatbar, Kashyap, Connelly, John C., Kirschner, Sophie A., Webb, Shaun, Koerner, Martha V., Selfridge, Jim, Kelly, David A., De Sousa, Dina, Brown, Kyla, Lyst, Matthew J., Kriaucionis, Skirmantas, Bird, Adrian

Source: In Molecular Cell 18 March 2021 81(6):1260-1275

Human DNA polymerase ε is a source of C>T mutations at CpG dinucleotides

Authors: Tomkova, Marketa, McClellan, Michael John, Crevel, Gilles, Shahid, Akbar Muhammed, Mozumdar, Nandini, Tomek, Jakub, Shepherd, Emelie, Cotterill, Sue, Schuster-Böckler, Benjamin, Kriaucionis, Skirmantas

Source: Nature Genetics; November 2024, Vol. 56 Issue: 11 p2506-2516, 11p

Absolute quantitative and base-resolution sequencing reveals comprehensive landscape of pseudouridine across the human transcriptome

Authors: Xu, Haiqi, Kong, Linzhen, Cheng, Jingfei, Al Moussawi, Khatoun, Chen, Xiufei, Iqbal, Aleema, Wing, Peter A. C., Harris, James M., Tsukuda, Senko, Embarc-Buh, Azman, Wei, Guifeng, Castello, Alfredo, Kriaucionis, Skirmantas, McKeating, Jane A., Lu, Xin, Song, Chun-Xiao

Source: Nature Methods; November 2024, Vol. 21 Issue: 11 p2024-2033, 10p

Distinct contributions of DNA methylation and histone acetylation to the genomic occupancy of transcription factors

Authors: Cusack, Martin, King, Hamish W., Spingardi, Paolo, Kessler, Benedikt M., Klose, Robert J., Kriaucionis, Skirmantas

Source: Genome research. 30(10):1393-1406

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN624968072&indx=1&recIds=ETOCRN624968072

DNA Replication and associated repair pathways are involved in the mutagenesis of methylated cytosine

Authors: Tomkova, Marketa, McClellan, Michael, Kriaucionis, Skirmantas, Schuster-Böckler, Benjamin

Source: In DNA Repair February 2018 62:1-7

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads

Authors: Müller, Carolin, Boemo, Michael, Spingardi, Paolo, Kessler, Benedikt, Kriaucionis, Skirmantas, Simpson, Jared, Nieduszynski, Conrad

Source: Nature methods. 16(5):429-436

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100135426923.0x000001&indx=1&recIds=ETOCvdc_100135426923.0x000001

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome

Authors: Gdula, Michal, Nesterova, Tatyana, Pintacuda, Greta, Godwin, Jonathan, Zhan, Ye, Ozadam, Hakan, McClellan, Michael, Moralli, Daniella, Krueger, Felix, Green, Catherine, Reik, Wolf, Kriaucionis, Skirmantas, Heard, Edith, Dekker, Job, Brockdorff, Neil

Source: Nature communications. 10(1):1-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100100187466.0x000001&indx=1&recIds=ETOCvdc_100100187466.0x000001

The SET1 Complex Selects Actively Transcribed Target Genes via Multivalent Interaction with CpG Island Chromatin

Authors: Brown, David A., Di Cerbo, Vincenzo, Feldmann, Angelika, Ahn, Jaewoo, Ito, Shinsuke, Blackledge, Neil P., Nakayama, Manabu, McClellan, Michael, Dimitrova, Emilia, Turberfield, Anne H., Long, Hannah K., King, Hamish W., Kriaucionis, Skirmantas, Schermelleh, Lothar, Kutateladze, Tatiana G., Koseki, Haruhiko, Klose, Robert J.

Source: In Cell Reports 5 September 2017 20(10):2313-2327

ATACing DNA Methylation during Differentiation

Authors: Kriaucionis, Skirmantas, Klose, Robert J.

Source: Molecular cell. 77(6):1159-1161

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100100481754.0x000001&indx=1&recIds=ETOCvdc_100100481754.0x000001

Molecular and Functional Sex Differences of Noradrenergic Neurons in the Mouse Locus Coeruleus

Authors: Mulvey, Bernard, Bhatti, Dionnet L., Gyawali, Sandeep, Lake, Allison M., Kriaucionis, Skirmantas, Ford, Christopher P., Bruchas, Michael R., Heintz, Nathaniel, Dougherty, Joseph D.

Source: Cell reports. 23(8):2225-2235

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100083060946.0x000001&indx=1&recIds=ETOCvdc_100083060946.0x000001

Mutational signature distribution varies with DNA replication timing and strand asymmetry

Authors: Tomkova, Marketa, Tomek, Jakub, Kriaucionis, Skirmantas, Schuster-Böckler, Benjamin

Source: Genome biology. 19(1):1-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100181171794.0x000001&indx=1&recIds=ETOCvdc_100181171794.0x000001

Expression of Idh1R132H in the Murine Subventricular Zone Stem Cell Niche Recapitulates Features of Early Gliomagenesis

Authors: Bardella, Chiara, Al-Dalahmah, Osama, Krell, Daniel, Brazauskas, Pijus, Al-Qahtani, Khalid, Tomkova, Marketa, Adam, Julie, Serres, Sébastien, Lockstone, Helen, Freeman-Mills, Luke, Pfeffer, Inga, Sibson, Nicola, Goldin, Robert, Schuster-Böeckler, Benjamin, Pollard, Patrick J., Soga, Tomoyoshi, McCullagh, James S., Schofield, Christopher J., Mulholland, Paul, Ansorge, Olaf, Kriaucionis, Skirmantas, Ratcliffe, Peter J., Szele, Francis G., Tomlinson, Ian

Source: In Cancer Cell 10 October 2016 30(4):578-594

Focused Screening Identifies Different Sensitivities of Human TET Oxygenases to the Oncometabolite 2‑Hydroxyglutarate.

Authors: Belle, Roman, Saraç, Hilal, Salah, Eidarus, Bhushan, Bhaskar, Szykowska, Aleksandra, Roper, Grace, Tumber, Anthony, Kriaucionis, Skirmantas, Burgess-Brown, Nicola, Schofield, Christopher J., Brown, Tom, Kawamura, Akane

Source: Journal of Medicinal Chemistry; 3/28/2024, Vol. 67 Issue 6, p4525-4540, 16p

From herbal small RNAs to one medicine

Authors: Ji, Chao, Kriaucionis, Skirmantas, Kessler, Benedikt M., Jiang, Chengyu

Source: Science China.Life sciences. 62(3):285-287

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100146862212.0x000001&indx=1&recIds=ETOCvdc_100146862212.0x000001

MicroRNAs of the miR-290–295 Family Maintain Bivalency in Mouse Embryonic Stem Cells

Authors: Graham, Bryony, Marcais, Antoine, Dharmalingam, Gopuraja, Carroll, Thomas, Kanellopoulou, Chryssa, Graumann, Johannes, Nesterova, Tatyana B., Bermange, Anna, Brazauskas, Pijus, Xella, Barbara, Kriaucionis, Skirmantas, Higgs, Douglas R., Brockdorff, Neil, Mann, Matthias, Fisher, Amanda G., Merkenschlager, Matthias

Source: Stem cell reports. 6(5):635-642

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100063111110.0x000001&indx=1&recIds=ETOCvdc_100063111110.0x000001

Different Roles for Tet1 and Tet2 Proteins in Reprogramming-Mediated Erasure of Imprints Induced by EGC Fusion

Authors: Piccolo, Francesco M., Bagci, Hakan, Brown, Karen E., Landeira, David, Soza-Ried, Jorge, Feytout, Amelie, Mooijman, Dylan, Hajkova, Petra, Leitch, Harry G., Tada, Takashi, Kriaucionis, Skirmantas, Dawlaty, Meelad M., Jaenisch, Rudolf, Merkenschlager, Matthias, Fisher, Amanda G.

Source: In Molecular Cell 28 March 2013 49(6):1023-1033

MeCP2 Binds to 5hmC Enriched within Active Genes and Accessible Chromatin in the Nervous System

Authors: Mellén, Marian, Ayata, Pinar, Dewell, Scott, Kriaucionis, Skirmantas, Heintz, Nathaniel

Source: In Cell 21 December 2012 151(7):1417-1430

The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain

Authors: Kriaucionis, Skirmantas, Heintz, Nathaniel

Source: Science, 2009 May . 324(5929), 929-930.

Access URL: https://www.jstor.org/stable/20493948

Interaction between Chromatin Proteins MECP2 and ATRX Is Disrupted by Mutations That Cause Inherited Mental Retardation

Authors: Nan, Xinsheng, Hou, Jianghui, Maclean, Alan, Nasir, Jamal, Lafuente, Maria Jose, Shu, Xinhua, Kriaucionis, Skirmantas, Bird, Adrian

Source: Proceedings of the National Academy of Sciences of the United States of America, 2007 Feb . 104(8), 2709-2714.

Access URL: https://www.jstor.org/stable/25426539